Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:H4:H5
Extra
PDB:
ATOM 1 O3' C A 3 -2.131 29.613 82.164 1.00 83.17 O
ATOM 2 P A A 4 -2.817 28.634 83.237 1.00 79.94 P
ATOM 3 OP1 A A 4 -3.861 28.010 82.391 1.00 82.73 O
ATOM 4 OP2 A A 4 -1.764 27.745 83.791 1.00 71.58 O
ATOM 5 O5' A A 4 -3.488 29.525 84.381 1.00 68.21 O
ATOM 6 C5' A A 4 -4.148 30.759 84.141 1.00 67.77 C
ATOM 7 C4' A A 4 -5.572 30.769 84.648 1.00 69.30 C
ATOM 8 O4' A A 4 -6.441 30.061 83.728 1.00 72.01 O
ATOM 9 C3' A A 4 -5.845 30.105 85.988 1.00 70.50 C
ATOM 10 O3' A A 4 -5.519 30.932 87.084 1.00 76.17 O
ATOM 11 C2' A A 4 -7.334 29.796 85.906 1.00 73.30 C
ATOM 12 O2' A A 4 -8.100 30.966 86.146 1.00 78.15 O
ATOM 13 C1' A A 4 -7.490 29.437 84.433 1.00 68.07 C
ATOM 14 N9 A A 4 -7.429 27.991 84.162 1.00 61.40 N
ATOM 15 C8 A A 4 -6.403 27.295 83.578 1.00 60.27 C
ATOM 16 N7 A A 4 -6.632 26.009 83.434 1.00 56.35 N
ATOM 17 C5 A A 4 -7.902 25.850 83.949 1.00 53.42 C
ATOM 18 C6 A A 4 -8.714 24.726 84.084 1.00 49.92 C
ATOM 19 N6 A A 4 -8.366 23.510 83.700 1.00 46.61 N
ATOM 20 N1 A A 4 -9.919 24.892 84.637 1.00 51.08 N
ATOM 21 C2 A A 4 -10.276 26.122 85.027 1.00 55.91 C
ATOM 22 N3 A A 4 -9.607 27.267 84.955 1.00 60.37 N
ATOM 23 C4 A A 4 -8.408 27.058 84.395 1.00 58.93 C
ATOM 24 P G A 5 -5.189 30.295 88.507 1.00 78.36 P
ATOM 25 OP1 G A 5 -4.770 31.469 89.298 1.00 72.40 O
ATOM 26 OP2 G A 5 -4.274 29.148 88.375 1.00 57.23 O
ATOM 27 O5' G A 5 -6.592 29.745 88.985 1.00 66.40 O
TER
ATOM 1 O3' A B 4 -5.519 30.932 87.084 1.00 76.17 O
ATOM 2 P G B 5 -5.189 30.295 88.507 1.00 78.36 P
ATOM 3 OP1 G B 5 -4.770 31.469 89.298 1.00 72.40 O
ATOM 4 OP2 G B 5 -4.274 29.148 88.375 1.00 57.23 O
ATOM 5 O5' G B 5 -6.592 29.745 88.985 1.00 66.40 O
ATOM 6 C5' G B 5 -7.426 30.494 89.854 1.00 69.42 C
ATOM 7 C4' G B 5 -8.769 29.831 90.004 1.00 71.29 C
ATOM 8 O4' G B 5 -9.105 29.216 88.738 1.00 73.64 O
ATOM 9 C3' G B 5 -8.857 28.680 90.993 1.00 66.42 C
ATOM 10 O3' G B 5 -9.025 29.094 92.341 1.00 70.75 O
ATOM 11 C2' G B 5 -10.035 27.889 90.445 1.00 65.46 C
ATOM 12 O2' G B 5 -11.261 28.545 90.735 1.00 75.91 O
ATOM 13 C1' G B 5 -9.773 27.997 88.947 1.00 64.01 C
ATOM 14 N9 G B 5 -8.918 26.903 88.446 1.00 58.31 N
ATOM 15 C8 G B 5 -7.586 26.907 88.120 1.00 56.46 C
ATOM 16 N7 G B 5 -7.145 25.752 87.695 1.00 51.37 N
ATOM 17 C5 G B 5 -8.257 24.933 87.748 1.00 48.34 C
ATOM 18 C6 G B 5 -8.426 23.563 87.420 1.00 43.21 C
ATOM 19 O6 G B 5 -7.608 22.730 86.995 1.00 40.37 O
ATOM 20 N1 G B 5 -9.739 23.178 87.641 1.00 42.90 N
ATOM 21 C2 G B 5 -10.747 23.987 88.108 1.00 46.71 C
ATOM 22 N2 G B 5 -11.963 23.439 88.261 1.00 45.97 N
ATOM 23 N3 G B 5 -10.594 25.253 88.408 1.00 51.96 N
ATOM 24 C4 G B 5 -9.341 25.643 88.202 1.00 52.64 C
ATOM 25 P G B 6 -8.349 28.314 93.575 1.00 76.06 P
ATOM 26 OP1 G B 6 -8.839 29.114 94.719 1.00 75.97 O
ATOM 27 OP2 G B 6 -6.891 28.142 93.375 1.00 63.18 O
ATOM 28 O5' G B 6 -9.065 26.896 93.524 1.00 64.29 O
TER
ATOM 2 P A A 4 -2.817 28.634 83.237 1.00 79.94 P
ATOM 3 OP1 A A 4 -3.861 28.010 82.391 1.00 82.73 O
ATOM 4 OP2 A A 4 -1.764 27.745 83.791 1.00 71.58 O
ATOM 5 O5' A A 4 -3.488 29.525 84.381 1.00 68.21 O
ATOM 6 C5' A A 4 -4.148 30.759 84.141 1.00 67.77 C
ATOM 7 C4' A A 4 -5.572 30.769 84.648 1.00 69.30 C
ATOM 8 O4' A A 4 -6.441 30.061 83.728 1.00 72.01 O
ATOM 9 C3' A A 4 -5.845 30.105 85.988 1.00 70.50 C
ATOM 10 O3' A A 4 -5.519 30.932 87.084 1.00 76.17 O
ATOM 11 C2' A A 4 -7.334 29.796 85.906 1.00 73.30 C
ATOM 12 O2' A A 4 -8.100 30.966 86.146 1.00 78.15 O
ATOM 13 C1' A A 4 -7.490 29.437 84.433 1.00 68.07 C
ATOM 14 N9 A A 4 -7.429 27.991 84.162 1.00 61.40 N
ATOM 15 C8 A A 4 -6.403 27.295 83.578 1.00 60.27 C
ATOM 16 N7 A A 4 -6.632 26.009 83.434 1.00 56.35 N
ATOM 17 C5 A A 4 -7.902 25.850 83.949 1.00 53.42 C
ATOM 18 C6 A A 4 -8.714 24.726 84.084 1.00 49.92 C
ATOM 19 N6 A A 4 -8.366 23.510 83.700 1.00 46.61 N
ATOM 20 N1 A A 4 -9.919 24.892 84.637 1.00 51.08 N
ATOM 21 C2 A A 4 -10.276 26.122 85.027 1.00 55.91 C
ATOM 22 N3 A A 4 -9.607 27.267 84.955 1.00 60.37 N
ATOM 23 C4 A A 4 -8.408 27.058 84.395 1.00 58.93 C
ATOM 24 P G A 5 -5.189 30.295 88.507 1.00 78.36 P
ATOM 25 OP1 G A 5 -4.770 31.469 89.298 1.00 72.40 O
ATOM 26 OP2 G A 5 -4.274 29.148 88.375 1.00 57.23 O
ATOM 27 O5' G A 5 -6.592 29.745 88.985 1.00 66.40 O
TER
ATOM 1 O3' A B 4 -5.519 30.932 87.084 1.00 76.17 O
ATOM 2 P G B 5 -5.189 30.295 88.507 1.00 78.36 P
ATOM 3 OP1 G B 5 -4.770 31.469 89.298 1.00 72.40 O
ATOM 4 OP2 G B 5 -4.274 29.148 88.375 1.00 57.23 O
ATOM 5 O5' G B 5 -6.592 29.745 88.985 1.00 66.40 O
ATOM 6 C5' G B 5 -7.426 30.494 89.854 1.00 69.42 C
ATOM 7 C4' G B 5 -8.769 29.831 90.004 1.00 71.29 C
ATOM 8 O4' G B 5 -9.105 29.216 88.738 1.00 73.64 O
ATOM 9 C3' G B 5 -8.857 28.680 90.993 1.00 66.42 C
ATOM 10 O3' G B 5 -9.025 29.094 92.341 1.00 70.75 O
ATOM 11 C2' G B 5 -10.035 27.889 90.445 1.00 65.46 C
ATOM 12 O2' G B 5 -11.261 28.545 90.735 1.00 75.91 O
ATOM 13 C1' G B 5 -9.773 27.997 88.947 1.00 64.01 C
ATOM 14 N9 G B 5 -8.918 26.903 88.446 1.00 58.31 N
ATOM 15 C8 G B 5 -7.586 26.907 88.120 1.00 56.46 C
ATOM 16 N7 G B 5 -7.145 25.752 87.695 1.00 51.37 N
ATOM 17 C5 G B 5 -8.257 24.933 87.748 1.00 48.34 C
ATOM 18 C6 G B 5 -8.426 23.563 87.420 1.00 43.21 C
ATOM 19 O6 G B 5 -7.608 22.730 86.995 1.00 40.37 O
ATOM 20 N1 G B 5 -9.739 23.178 87.641 1.00 42.90 N
ATOM 21 C2 G B 5 -10.747 23.987 88.108 1.00 46.71 C
ATOM 22 N2 G B 5 -11.963 23.439 88.261 1.00 45.97 N
ATOM 23 N3 G B 5 -10.594 25.253 88.408 1.00 51.96 N
ATOM 24 C4 G B 5 -9.341 25.643 88.202 1.00 52.64 C
ATOM 25 P G B 6 -8.349 28.314 93.575 1.00 76.06 P
ATOM 26 OP1 G B 6 -8.839 29.114 94.719 1.00 75.97 O
ATOM 27 OP2 G B 6 -6.891 28.142 93.375 1.00 63.18 O
ATOM 28 O5' G B 6 -9.065 26.896 93.524 1.00 64.29 O
TER
Atoms:
OP1: (-3.861,28.010,82.391)
OP2: (-1.764,27.745,83.791)
C3': (-5.845,30.105,85.988)
C1': (-7.490,29.437,84.433)
C5': (-4.148,30.759,84.141)
O4': (-6.441,30.061,83.728)
C8: (-6.403,27.295,83.578)
O2': (-8.100,30.966,86.146)
C6: (-8.714,24.726,84.084)
C5: (-7.902,25.850,83.949)
C4: (-8.408,27.058,84.395)
P: (-2.817,28.634,83.237)
C4': (-5.572,30.769,84.648)
C2': (-7.334,29.796,85.906)
C2: (-10.276,26.122,85.027)
N1: (-9.919,24.892,84.637)
N3: (-9.607,27.267,84.955)
N6: (-8.366,23.510,83.700)
N7: (-6.632,26.009,83.434)
N9: (-7.429,27.991,84.162)
O5': (-3.488,29.525,84.381)
O3': (-5.519,30.932,87.084)
OP2: (-1.764,27.745,83.791)
C3': (-5.845,30.105,85.988)
C1': (-7.490,29.437,84.433)
C5': (-4.148,30.759,84.141)
O4': (-6.441,30.061,83.728)
C8: (-6.403,27.295,83.578)
O2': (-8.100,30.966,86.146)
C6: (-8.714,24.726,84.084)
C5: (-7.902,25.850,83.949)
C4: (-8.408,27.058,84.395)
P: (-2.817,28.634,83.237)
C4': (-5.572,30.769,84.648)
C2': (-7.334,29.796,85.906)
C2: (-10.276,26.122,85.027)
N1: (-9.919,24.892,84.637)
N3: (-9.607,27.267,84.955)
N6: (-8.366,23.510,83.700)
N7: (-6.632,26.009,83.434)
N9: (-7.429,27.991,84.162)
O5': (-3.488,29.525,84.381)
O3': (-5.519,30.932,87.084)
OP1: (-4.770,31.469,89.298)
OP2: (-4.274,29.148,88.375)
C3': (-8.857,28.680,90.993)
C1': (-9.773,27.997,88.947)
C5': (-7.426,30.494,89.854)
O6: (-7.608,22.730,86.995)
O4': (-9.105,29.216,88.738)
C8: (-7.586,26.907,88.120)
C2: (-10.747,23.987,88.108)
C6: (-8.426,23.563,87.420)
C5: (-8.257,24.933,87.748)
C4: (-9.341,25.643,88.202)
P: (-5.189,30.295,88.507)
C4': (-8.769,29.831,90.004)
C2': (-10.035,27.889,90.445)
O2': (-11.261,28.545,90.735)
N1: (-9.739,23.178,87.641)
N2: (-11.963,23.439,88.261)
N3: (-10.594,25.253,88.408)
N7: (-7.145,25.752,87.695)
N9: (-8.918,26.903,88.446)
O5': (-6.592,29.745,88.985)
O3': (-9.025,29.094,92.341)
OP2: (-4.274,29.148,88.375)
C3': (-8.857,28.680,90.993)
C1': (-9.773,27.997,88.947)
C5': (-7.426,30.494,89.854)
O6: (-7.608,22.730,86.995)
O4': (-9.105,29.216,88.738)
C8: (-7.586,26.907,88.120)
C2: (-10.747,23.987,88.108)
C6: (-8.426,23.563,87.420)
C5: (-8.257,24.933,87.748)
C4: (-9.341,25.643,88.202)
P: (-5.189,30.295,88.507)
C4': (-8.769,29.831,90.004)
C2': (-10.035,27.889,90.445)
O2': (-11.261,28.545,90.735)
N1: (-9.739,23.178,87.641)
N2: (-11.963,23.439,88.261)
N3: (-10.594,25.253,88.408)
N7: (-7.145,25.752,87.695)
N9: (-8.918,26.903,88.446)
O5': (-6.592,29.745,88.985)
O3': (-9.025,29.094,92.341)
Image (generated by PyMOL):