Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2DLC:Y13:Y14
Extra
PDB:
ATOM 1 O3' A A 12 0.540 0.433 141.536 1.00 33.24 O
ATOM 2 P A A 13 1.334 -0.885 141.110 1.00 33.06 P
ATOM 3 OP1 A A 13 1.233 -1.834 142.246 1.00 33.29 O
ATOM 4 OP2 A A 13 2.668 -0.496 140.597 1.00 32.94 O
ATOM 5 O5' A A 13 0.475 -1.426 139.870 1.00 33.18 O
ATOM 6 C5' A A 13 -0.706 -2.203 140.081 1.00 33.14 C
ATOM 7 C4' A A 13 -1.318 -2.669 138.770 1.00 33.02 C
ATOM 8 O4' A A 13 -1.688 -1.530 137.954 1.00 32.92 O
ATOM 9 C3' A A 13 -0.416 -3.477 137.848 1.00 32.76 C
ATOM 10 O3' A A 13 -0.324 -4.828 138.276 1.00 32.85 O
ATOM 11 C2' A A 13 -1.176 -3.353 136.533 1.00 32.70 C
ATOM 12 O2' A A 13 -2.296 -4.214 136.444 1.00 32.59 O
ATOM 13 C1' A A 13 -1.634 -1.900 136.587 1.00 32.76 C
ATOM 14 N9 A A 13 -0.738 -0.996 135.865 1.00 32.76 N
ATOM 15 C8 A A 13 0.165 -0.121 136.404 1.00 32.85 C
ATOM 16 N7 A A 13 0.840 0.565 135.513 1.00 32.80 N
ATOM 17 C5 A A 13 0.347 0.107 134.304 1.00 32.71 C
ATOM 18 C6 A A 13 0.651 0.439 132.966 1.00 32.64 C
ATOM 19 N6 A A 13 1.568 1.352 132.637 1.00 32.29 N
ATOM 20 N1 A A 13 -0.023 -0.203 131.982 1.00 32.55 N
ATOM 21 C2 A A 13 -0.943 -1.119 132.320 1.00 32.58 C
ATOM 22 N3 A A 13 -1.314 -1.514 133.542 1.00 32.71 N
ATOM 23 C4 A A 13 -0.627 -0.857 134.499 1.00 32.70 C
ATOM 24 P G A 14 1.029 -5.669 138.093 1.00 32.90 P
ATOM 25 OP1 G A 14 0.722 -7.065 138.484 1.00 32.93 O
ATOM 26 OP2 G A 14 2.112 -4.941 138.794 1.00 32.77 O
ATOM 27 O5' G A 14 1.354 -5.599 136.520 1.00 32.98 O
TER
ATOM 1 O3' A B 13 -0.324 -4.828 138.276 1.00 32.85 O
ATOM 2 P G B 14 1.029 -5.669 138.093 1.00 32.90 P
ATOM 3 OP1 G B 14 0.722 -7.065 138.484 1.00 32.93 O
ATOM 4 OP2 G B 14 2.112 -4.941 138.794 1.00 32.77 O
ATOM 5 O5' G B 14 1.354 -5.599 136.520 1.00 32.98 O
ATOM 6 C5' G B 14 0.646 -6.387 135.556 1.00 33.43 C
ATOM 7 C4' G B 14 0.895 -5.904 134.132 1.00 33.91 C
ATOM 8 O4' G B 14 0.764 -4.460 134.044 1.00 33.88 O
ATOM 9 C3' G B 14 2.285 -6.188 133.575 1.00 34.21 C
ATOM 10 O3' G B 14 2.370 -7.518 133.073 1.00 35.04 O
ATOM 11 C2' G B 14 2.404 -5.137 132.472 1.00 34.00 C
ATOM 12 O2' G B 14 1.786 -5.516 131.255 1.00 34.19 O
ATOM 13 C1' G B 14 1.682 -3.942 133.095 1.00 33.78 C
ATOM 14 N9 G B 14 2.615 -3.018 133.747 1.00 33.48 N
ATOM 15 C8 G B 14 2.940 -2.968 135.083 1.00 33.48 C
ATOM 16 N7 G B 14 3.815 -2.047 135.380 1.00 33.38 N
ATOM 17 C5 G B 14 4.095 -1.445 134.162 1.00 33.26 C
ATOM 18 C6 G B 14 4.975 -0.376 133.854 1.00 33.23 C
ATOM 19 O6 G B 14 5.701 0.260 134.628 1.00 33.40 O
ATOM 20 N1 G B 14 4.972 -0.064 132.493 1.00 33.02 N
ATOM 21 C2 G B 14 4.207 -0.710 131.547 1.00 32.79 C
ATOM 22 N2 G B 14 4.332 -0.275 130.285 1.00 32.49 N
ATOM 23 N3 G B 14 3.377 -1.713 131.823 1.00 32.89 N
ATOM 24 C4 G B 14 3.368 -2.031 133.145 1.00 33.22 C
TER
ATOM 2 P A A 13 1.334 -0.885 141.110 1.00 33.06 P
ATOM 3 OP1 A A 13 1.233 -1.834 142.246 1.00 33.29 O
ATOM 4 OP2 A A 13 2.668 -0.496 140.597 1.00 32.94 O
ATOM 5 O5' A A 13 0.475 -1.426 139.870 1.00 33.18 O
ATOM 6 C5' A A 13 -0.706 -2.203 140.081 1.00 33.14 C
ATOM 7 C4' A A 13 -1.318 -2.669 138.770 1.00 33.02 C
ATOM 8 O4' A A 13 -1.688 -1.530 137.954 1.00 32.92 O
ATOM 9 C3' A A 13 -0.416 -3.477 137.848 1.00 32.76 C
ATOM 10 O3' A A 13 -0.324 -4.828 138.276 1.00 32.85 O
ATOM 11 C2' A A 13 -1.176 -3.353 136.533 1.00 32.70 C
ATOM 12 O2' A A 13 -2.296 -4.214 136.444 1.00 32.59 O
ATOM 13 C1' A A 13 -1.634 -1.900 136.587 1.00 32.76 C
ATOM 14 N9 A A 13 -0.738 -0.996 135.865 1.00 32.76 N
ATOM 15 C8 A A 13 0.165 -0.121 136.404 1.00 32.85 C
ATOM 16 N7 A A 13 0.840 0.565 135.513 1.00 32.80 N
ATOM 17 C5 A A 13 0.347 0.107 134.304 1.00 32.71 C
ATOM 18 C6 A A 13 0.651 0.439 132.966 1.00 32.64 C
ATOM 19 N6 A A 13 1.568 1.352 132.637 1.00 32.29 N
ATOM 20 N1 A A 13 -0.023 -0.203 131.982 1.00 32.55 N
ATOM 21 C2 A A 13 -0.943 -1.119 132.320 1.00 32.58 C
ATOM 22 N3 A A 13 -1.314 -1.514 133.542 1.00 32.71 N
ATOM 23 C4 A A 13 -0.627 -0.857 134.499 1.00 32.70 C
ATOM 24 P G A 14 1.029 -5.669 138.093 1.00 32.90 P
ATOM 25 OP1 G A 14 0.722 -7.065 138.484 1.00 32.93 O
ATOM 26 OP2 G A 14 2.112 -4.941 138.794 1.00 32.77 O
ATOM 27 O5' G A 14 1.354 -5.599 136.520 1.00 32.98 O
TER
ATOM 1 O3' A B 13 -0.324 -4.828 138.276 1.00 32.85 O
ATOM 2 P G B 14 1.029 -5.669 138.093 1.00 32.90 P
ATOM 3 OP1 G B 14 0.722 -7.065 138.484 1.00 32.93 O
ATOM 4 OP2 G B 14 2.112 -4.941 138.794 1.00 32.77 O
ATOM 5 O5' G B 14 1.354 -5.599 136.520 1.00 32.98 O
ATOM 6 C5' G B 14 0.646 -6.387 135.556 1.00 33.43 C
ATOM 7 C4' G B 14 0.895 -5.904 134.132 1.00 33.91 C
ATOM 8 O4' G B 14 0.764 -4.460 134.044 1.00 33.88 O
ATOM 9 C3' G B 14 2.285 -6.188 133.575 1.00 34.21 C
ATOM 10 O3' G B 14 2.370 -7.518 133.073 1.00 35.04 O
ATOM 11 C2' G B 14 2.404 -5.137 132.472 1.00 34.00 C
ATOM 12 O2' G B 14 1.786 -5.516 131.255 1.00 34.19 O
ATOM 13 C1' G B 14 1.682 -3.942 133.095 1.00 33.78 C
ATOM 14 N9 G B 14 2.615 -3.018 133.747 1.00 33.48 N
ATOM 15 C8 G B 14 2.940 -2.968 135.083 1.00 33.48 C
ATOM 16 N7 G B 14 3.815 -2.047 135.380 1.00 33.38 N
ATOM 17 C5 G B 14 4.095 -1.445 134.162 1.00 33.26 C
ATOM 18 C6 G B 14 4.975 -0.376 133.854 1.00 33.23 C
ATOM 19 O6 G B 14 5.701 0.260 134.628 1.00 33.40 O
ATOM 20 N1 G B 14 4.972 -0.064 132.493 1.00 33.02 N
ATOM 21 C2 G B 14 4.207 -0.710 131.547 1.00 32.79 C
ATOM 22 N2 G B 14 4.332 -0.275 130.285 1.00 32.49 N
ATOM 23 N3 G B 14 3.377 -1.713 131.823 1.00 32.89 N
ATOM 24 C4 G B 14 3.368 -2.031 133.145 1.00 33.22 C
TER
Atoms:
OP1: (1.233,-1.834,142.246)
OP2: (2.668,-0.496,140.597)
C3': (-0.416,-3.477,137.848)
C1': (-1.634,-1.900,136.587)
C5': (-0.706,-2.203,140.081)
O4': (-1.688,-1.530,137.954)
C8: (0.165,-0.121,136.404)
O2': (-2.296,-4.214,136.444)
C6: (0.651,0.439,132.966)
C5: (0.347,0.107,134.304)
C4: (-0.627,-0.857,134.499)
P: (1.334,-0.885,141.110)
C4': (-1.318,-2.669,138.770)
C2': (-1.176,-3.353,136.533)
C2: (-0.943,-1.119,132.320)
N1: (-0.023,-0.203,131.982)
N3: (-1.314,-1.514,133.542)
N6: (1.568,1.352,132.637)
N7: (0.840,0.565,135.513)
N9: (-0.738,-0.996,135.865)
O5': (0.475,-1.426,139.870)
O3': (-0.324,-4.828,138.276)
OP2: (2.668,-0.496,140.597)
C3': (-0.416,-3.477,137.848)
C1': (-1.634,-1.900,136.587)
C5': (-0.706,-2.203,140.081)
O4': (-1.688,-1.530,137.954)
C8: (0.165,-0.121,136.404)
O2': (-2.296,-4.214,136.444)
C6: (0.651,0.439,132.966)
C5: (0.347,0.107,134.304)
C4: (-0.627,-0.857,134.499)
P: (1.334,-0.885,141.110)
C4': (-1.318,-2.669,138.770)
C2': (-1.176,-3.353,136.533)
C2: (-0.943,-1.119,132.320)
N1: (-0.023,-0.203,131.982)
N3: (-1.314,-1.514,133.542)
N6: (1.568,1.352,132.637)
N7: (0.840,0.565,135.513)
N9: (-0.738,-0.996,135.865)
O5': (0.475,-1.426,139.870)
O3': (-0.324,-4.828,138.276)
OP1: (0.722,-7.065,138.484)
OP2: (2.112,-4.941,138.794)
C3': (2.285,-6.188,133.575)
C1': (1.682,-3.942,133.095)
C5': (0.646,-6.387,135.556)
O6: (5.701,0.260,134.628)
O4': (0.764,-4.460,134.044)
C8: (2.940,-2.968,135.083)
C2: (4.207,-0.710,131.547)
C6: (4.975,-0.376,133.854)
C5: (4.095,-1.445,134.162)
C4: (3.368,-2.031,133.145)
P: (1.029,-5.669,138.093)
C4': (0.895,-5.904,134.132)
C2': (2.404,-5.137,132.472)
O2': (1.786,-5.516,131.255)
N1: (4.972,-0.064,132.493)
N2: (4.332,-0.275,130.285)
N3: (3.377,-1.713,131.823)
N7: (3.815,-2.047,135.380)
N9: (2.615,-3.018,133.747)
O5': (1.354,-5.599,136.520)
O3': (2.370,-7.518,133.073)
OP2: (2.112,-4.941,138.794)
C3': (2.285,-6.188,133.575)
C1': (1.682,-3.942,133.095)
C5': (0.646,-6.387,135.556)
O6: (5.701,0.260,134.628)
O4': (0.764,-4.460,134.044)
C8: (2.940,-2.968,135.083)
C2: (4.207,-0.710,131.547)
C6: (4.975,-0.376,133.854)
C5: (4.095,-1.445,134.162)
C4: (3.368,-2.031,133.145)
P: (1.029,-5.669,138.093)
C4': (0.895,-5.904,134.132)
C2': (2.404,-5.137,132.472)
O2': (1.786,-5.516,131.255)
N1: (4.972,-0.064,132.493)
N2: (4.332,-0.275,130.285)
N3: (3.377,-1.713,131.823)
N7: (3.815,-2.047,135.380)
N9: (2.615,-3.018,133.747)
O5': (1.354,-5.599,136.520)
O3': (2.370,-7.518,133.073)
Image (generated by PyMOL):