Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:439:438
Extra
PDB:
ATOM 1 O3' G A 38 58.168 -0.778 131.622 1.00 49.56 O
ATOM 2 P A A 39 59.295 -0.268 130.594 1.00 46.64 P
ATOM 3 OP1 A A 39 60.537 -0.150 131.360 1.00 47.24 O
ATOM 4 OP2 A A 39 58.761 0.935 129.910 1.00 46.38 O
ATOM 5 O5' A A 39 59.413 -1.472 129.562 1.00 45.94 O
ATOM 6 C5' A A 39 60.529 -2.340 129.555 1.00 45.98 C
ATOM 7 C4' A A 39 60.378 -3.383 128.491 1.00 45.29 C
ATOM 8 O4' A A 39 59.206 -4.161 128.773 1.00 45.20 O
ATOM 9 C3' A A 39 60.145 -2.843 127.097 1.00 44.61 C
ATOM 10 O3' A A 39 61.331 -2.543 126.413 1.00 44.47 O
ATOM 11 C2' A A 39 59.288 -3.907 126.422 1.00 44.05 C
ATOM 12 O2' A A 39 60.067 -4.979 125.911 1.00 43.81 O
ATOM 13 C1' A A 39 58.481 -4.417 127.588 1.00 44.48 C
ATOM 14 N9 A A 39 57.172 -3.751 127.686 1.00 44.45 N
ATOM 15 C8 A A 39 56.782 -2.856 128.648 1.00 45.00 C
ATOM 16 N7 A A 39 55.541 -2.457 128.562 1.00 44.88 N
ATOM 17 C5 A A 39 55.100 -3.148 127.449 1.00 44.19 C
ATOM 18 C6 A A 39 53.876 -3.156 126.826 1.00 43.78 C
ATOM 19 N6 A A 39 52.902 -2.417 127.284 1.00 44.02 N
ATOM 20 N1 A A 39 53.688 -3.916 125.764 1.00 43.17 N
ATOM 21 C2 A A 39 54.691 -4.649 125.336 1.00 42.97 C
ATOM 22 N3 A A 39 55.911 -4.743 125.827 1.00 43.31 N
ATOM 23 C4 A A 39 56.065 -3.948 126.900 1.00 43.92 C
ATOM 24 P A A 40 61.438 -1.161 125.622 1.00 51.28 P
ATOM 25 OP1 A A 40 62.892 -0.881 125.374 1.00 51.42 O
ATOM 26 OP2 A A 40 60.612 -0.173 126.380 1.00 51.66 O
ATOM 27 O5' A A 40 60.741 -1.502 124.272 1.00 50.48 O
TER
ATOM 1 O3' U B 37 61.165 -3.344 136.789 1.00 54.08 O
ATOM 2 P G B 38 60.449 -1.983 136.289 1.00 52.34 P
ATOM 3 OP1 G B 38 61.425 -1.252 135.494 1.00 52.12 O
ATOM 4 OP2 G B 38 59.841 -1.320 137.445 1.00 53.05 O
ATOM 5 O5' G B 38 59.305 -2.523 135.368 1.00 51.58 O
ATOM 6 C5' G B 38 59.573 -3.084 134.101 1.00 50.82 C
ATOM 7 C4' G B 38 58.546 -2.621 133.145 1.00 50.21 C
ATOM 8 O4' G B 38 57.248 -2.979 133.695 1.00 50.33 O
ATOM 9 C3' G B 38 58.529 -1.111 132.963 1.00 50.30 C
ATOM 10 O3' G B 38 58.168 -0.778 131.622 1.00 49.56 O
ATOM 11 C2' G B 38 57.451 -0.659 133.934 1.00 50.80 C
ATOM 12 O2' G B 38 56.812 0.530 133.571 1.00 50.70 O
ATOM 13 C1' G B 38 56.480 -1.824 133.917 1.00 50.53 C
ATOM 14 N9 G B 38 55.764 -1.982 135.173 1.00 51.16 N
ATOM 15 C8 G B 38 56.353 -1.829 136.406 1.00 51.96 C
ATOM 16 N7 G B 38 55.529 -1.979 137.398 1.00 52.46 N
ATOM 17 C5 G B 38 54.303 -2.208 136.772 1.00 51.96 C
ATOM 18 C6 G B 38 53.020 -2.436 137.330 1.00 52.17 C
ATOM 19 O6 G B 38 52.635 -2.496 138.496 1.00 52.85 O
ATOM 20 N1 G B 38 52.065 -2.630 136.367 1.00 51.52 N
ATOM 21 C2 G B 38 52.265 -2.615 135.040 1.00 50.75 C
ATOM 22 N2 G B 38 51.107 -2.853 134.409 1.00 50.30 N
ATOM 23 N3 G B 38 53.452 -2.408 134.457 1.00 50.51 N
ATOM 24 C4 G B 38 54.423 -2.220 135.386 1.00 51.15 C
ATOM 25 P A B 39 59.295 -0.268 130.594 1.00 46.64 P
ATOM 26 OP1 A B 39 60.537 -0.150 131.360 1.00 47.24 O
ATOM 27 OP2 A B 39 58.761 0.935 129.910 1.00 46.38 O
ATOM 28 O5' A B 39 59.413 -1.472 129.562 1.00 45.94 O
TER
ATOM 2 P A A 39 59.295 -0.268 130.594 1.00 46.64 P
ATOM 3 OP1 A A 39 60.537 -0.150 131.360 1.00 47.24 O
ATOM 4 OP2 A A 39 58.761 0.935 129.910 1.00 46.38 O
ATOM 5 O5' A A 39 59.413 -1.472 129.562 1.00 45.94 O
ATOM 6 C5' A A 39 60.529 -2.340 129.555 1.00 45.98 C
ATOM 7 C4' A A 39 60.378 -3.383 128.491 1.00 45.29 C
ATOM 8 O4' A A 39 59.206 -4.161 128.773 1.00 45.20 O
ATOM 9 C3' A A 39 60.145 -2.843 127.097 1.00 44.61 C
ATOM 10 O3' A A 39 61.331 -2.543 126.413 1.00 44.47 O
ATOM 11 C2' A A 39 59.288 -3.907 126.422 1.00 44.05 C
ATOM 12 O2' A A 39 60.067 -4.979 125.911 1.00 43.81 O
ATOM 13 C1' A A 39 58.481 -4.417 127.588 1.00 44.48 C
ATOM 14 N9 A A 39 57.172 -3.751 127.686 1.00 44.45 N
ATOM 15 C8 A A 39 56.782 -2.856 128.648 1.00 45.00 C
ATOM 16 N7 A A 39 55.541 -2.457 128.562 1.00 44.88 N
ATOM 17 C5 A A 39 55.100 -3.148 127.449 1.00 44.19 C
ATOM 18 C6 A A 39 53.876 -3.156 126.826 1.00 43.78 C
ATOM 19 N6 A A 39 52.902 -2.417 127.284 1.00 44.02 N
ATOM 20 N1 A A 39 53.688 -3.916 125.764 1.00 43.17 N
ATOM 21 C2 A A 39 54.691 -4.649 125.336 1.00 42.97 C
ATOM 22 N3 A A 39 55.911 -4.743 125.827 1.00 43.31 N
ATOM 23 C4 A A 39 56.065 -3.948 126.900 1.00 43.92 C
ATOM 24 P A A 40 61.438 -1.161 125.622 1.00 51.28 P
ATOM 25 OP1 A A 40 62.892 -0.881 125.374 1.00 51.42 O
ATOM 26 OP2 A A 40 60.612 -0.173 126.380 1.00 51.66 O
ATOM 27 O5' A A 40 60.741 -1.502 124.272 1.00 50.48 O
TER
ATOM 1 O3' U B 37 61.165 -3.344 136.789 1.00 54.08 O
ATOM 2 P G B 38 60.449 -1.983 136.289 1.00 52.34 P
ATOM 3 OP1 G B 38 61.425 -1.252 135.494 1.00 52.12 O
ATOM 4 OP2 G B 38 59.841 -1.320 137.445 1.00 53.05 O
ATOM 5 O5' G B 38 59.305 -2.523 135.368 1.00 51.58 O
ATOM 6 C5' G B 38 59.573 -3.084 134.101 1.00 50.82 C
ATOM 7 C4' G B 38 58.546 -2.621 133.145 1.00 50.21 C
ATOM 8 O4' G B 38 57.248 -2.979 133.695 1.00 50.33 O
ATOM 9 C3' G B 38 58.529 -1.111 132.963 1.00 50.30 C
ATOM 10 O3' G B 38 58.168 -0.778 131.622 1.00 49.56 O
ATOM 11 C2' G B 38 57.451 -0.659 133.934 1.00 50.80 C
ATOM 12 O2' G B 38 56.812 0.530 133.571 1.00 50.70 O
ATOM 13 C1' G B 38 56.480 -1.824 133.917 1.00 50.53 C
ATOM 14 N9 G B 38 55.764 -1.982 135.173 1.00 51.16 N
ATOM 15 C8 G B 38 56.353 -1.829 136.406 1.00 51.96 C
ATOM 16 N7 G B 38 55.529 -1.979 137.398 1.00 52.46 N
ATOM 17 C5 G B 38 54.303 -2.208 136.772 1.00 51.96 C
ATOM 18 C6 G B 38 53.020 -2.436 137.330 1.00 52.17 C
ATOM 19 O6 G B 38 52.635 -2.496 138.496 1.00 52.85 O
ATOM 20 N1 G B 38 52.065 -2.630 136.367 1.00 51.52 N
ATOM 21 C2 G B 38 52.265 -2.615 135.040 1.00 50.75 C
ATOM 22 N2 G B 38 51.107 -2.853 134.409 1.00 50.30 N
ATOM 23 N3 G B 38 53.452 -2.408 134.457 1.00 50.51 N
ATOM 24 C4 G B 38 54.423 -2.220 135.386 1.00 51.15 C
ATOM 25 P A B 39 59.295 -0.268 130.594 1.00 46.64 P
ATOM 26 OP1 A B 39 60.537 -0.150 131.360 1.00 47.24 O
ATOM 27 OP2 A B 39 58.761 0.935 129.910 1.00 46.38 O
ATOM 28 O5' A B 39 59.413 -1.472 129.562 1.00 45.94 O
TER
Atoms:
OP1: (60.537,-0.150,131.360)
OP2: (58.761,0.935,129.910)
C3': (60.145,-2.843,127.097)
C1': (58.481,-4.417,127.588)
C5': (60.529,-2.340,129.555)
O4': (59.206,-4.161,128.773)
C8: (56.782,-2.856,128.648)
O2': (60.067,-4.979,125.911)
C6: (53.876,-3.156,126.826)
C5: (55.100,-3.148,127.449)
C4: (56.065,-3.948,126.900)
P: (59.295,-0.268,130.594)
C4': (60.378,-3.383,128.491)
C2': (59.288,-3.907,126.422)
C2: (54.691,-4.649,125.336)
N1: (53.688,-3.916,125.764)
N3: (55.911,-4.743,125.827)
N6: (52.902,-2.417,127.284)
N7: (55.541,-2.457,128.562)
N9: (57.172,-3.751,127.686)
O5': (59.413,-1.472,129.562)
O3': (61.331,-2.543,126.413)
OP2: (58.761,0.935,129.910)
C3': (60.145,-2.843,127.097)
C1': (58.481,-4.417,127.588)
C5': (60.529,-2.340,129.555)
O4': (59.206,-4.161,128.773)
C8: (56.782,-2.856,128.648)
O2': (60.067,-4.979,125.911)
C6: (53.876,-3.156,126.826)
C5: (55.100,-3.148,127.449)
C4: (56.065,-3.948,126.900)
P: (59.295,-0.268,130.594)
C4': (60.378,-3.383,128.491)
C2': (59.288,-3.907,126.422)
C2: (54.691,-4.649,125.336)
N1: (53.688,-3.916,125.764)
N3: (55.911,-4.743,125.827)
N6: (52.902,-2.417,127.284)
N7: (55.541,-2.457,128.562)
N9: (57.172,-3.751,127.686)
O5': (59.413,-1.472,129.562)
O3': (61.331,-2.543,126.413)
OP1: (61.425,-1.252,135.494)
OP2: (59.841,-1.320,137.445)
C3': (58.529,-1.111,132.963)
C1': (56.480,-1.824,133.917)
C5': (59.573,-3.084,134.101)
O6: (52.635,-2.496,138.496)
O4': (57.248,-2.979,133.695)
C8: (56.353,-1.829,136.406)
C2: (52.265,-2.615,135.040)
C6: (53.020,-2.436,137.330)
C5: (54.303,-2.208,136.772)
C4: (54.423,-2.220,135.386)
P: (60.449,-1.983,136.289)
C4': (58.546,-2.621,133.145)
C2': (57.451,-0.659,133.934)
O2': (56.812,0.530,133.571)
N1: (52.065,-2.630,136.367)
N2: (51.107,-2.853,134.409)
N3: (53.452,-2.408,134.457)
N7: (55.529,-1.979,137.398)
N9: (55.764,-1.982,135.173)
O5': (59.305,-2.523,135.368)
O3': (58.168,-0.778,131.622)
OP2: (59.841,-1.320,137.445)
C3': (58.529,-1.111,132.963)
C1': (56.480,-1.824,133.917)
C5': (59.573,-3.084,134.101)
O6: (52.635,-2.496,138.496)
O4': (57.248,-2.979,133.695)
C8: (56.353,-1.829,136.406)
C2: (52.265,-2.615,135.040)
C6: (53.020,-2.436,137.330)
C5: (54.303,-2.208,136.772)
C4: (54.423,-2.220,135.386)
P: (60.449,-1.983,136.289)
C4': (58.546,-2.621,133.145)
C2': (57.451,-0.659,133.934)
O2': (56.812,0.530,133.571)
N1: (52.065,-2.630,136.367)
N2: (51.107,-2.853,134.409)
N3: (53.452,-2.408,134.457)
N7: (55.529,-1.979,137.398)
N9: (55.764,-1.982,135.173)
O5': (59.305,-2.523,135.368)
O3': (58.168,-0.778,131.622)
Image (generated by PyMOL):