Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A35:A34
Extra
PDB:
ATOM 1 O3' G A 34 7.132 2.052 32.159 1.00122.28 O
ATOM 2 P A A 35 7.949 1.810 30.800 1.00122.40 P
ATOM 3 OP1 A A 35 9.357 1.556 31.167 1.00122.07 O
ATOM 4 OP2 A A 35 7.655 2.945 29.893 1.00122.05 O
ATOM 5 O5' A A 35 7.269 0.481 30.193 1.00121.88 O
ATOM 6 C5' A A 35 7.488 -0.819 30.761 1.00120.64 C
ATOM 7 C4' A A 35 6.338 -1.796 30.507 1.00119.97 C
ATOM 8 O4' A A 35 5.275 -1.534 31.452 1.00118.84 O
ATOM 9 C3' A A 35 5.652 -1.742 29.141 1.00120.56 C
ATOM 10 O3' A A 35 6.391 -2.513 28.172 1.00121.39 O
ATOM 11 C2' A A 35 4.211 -2.224 29.424 1.00119.93 C
ATOM 12 O2' A A 35 3.933 -3.616 29.341 1.00119.60 O
ATOM 13 C1' A A 35 4.005 -1.748 30.859 1.00118.65 C
ATOM 14 N9 A A 35 3.285 -0.495 30.954 1.00117.46 N
ATOM 15 C8 A A 35 3.740 0.659 31.535 1.00117.34 C
ATOM 16 N7 A A 35 2.882 1.643 31.475 1.00118.24 N
ATOM 17 C5 A A 35 1.797 1.096 30.799 1.00118.05 C
ATOM 18 C6 A A 35 0.550 1.641 30.414 1.00118.19 C
ATOM 19 N6 A A 35 0.184 2.907 30.673 1.00118.09 N
ATOM 20 N1 A A 35 -0.303 0.828 29.748 1.00118.61 N
ATOM 21 C2 A A 35 0.065 -0.436 29.494 1.00118.45 C
ATOM 22 N3 A A 35 1.205 -1.063 29.807 1.00117.75 N
ATOM 23 C4 A A 35 2.031 -0.229 30.467 1.00117.36 C
ATOM 24 P A A 36 6.690 -1.913 26.718 1.00121.93 P
ATOM 25 OP1 A A 36 7.391 -2.928 25.905 1.00120.78 O
ATOM 26 OP2 A A 36 7.268 -0.553 26.860 1.00121.40 O
ATOM 27 O5' A A 36 5.199 -1.781 26.185 1.00122.36 O
TER
ATOM 1 O3' C B 33 11.276 2.078 37.506 1.00124.08 O
ATOM 2 P G B 34 10.594 2.048 36.054 1.00123.53 P
ATOM 3 OP1 G B 34 9.618 0.934 36.016 1.00123.54 O
ATOM 4 OP2 G B 34 11.695 2.069 35.062 1.00123.38 O
ATOM 5 O5' G B 34 9.794 3.438 35.990 1.00122.66 O
ATOM 6 C5' G B 34 9.182 3.861 34.758 1.00123.12 C
ATOM 7 C4' G B 34 8.235 2.810 34.181 1.00122.86 C
ATOM 8 O4' G B 34 7.252 2.466 35.187 1.00122.10 O
ATOM 9 C3' G B 34 7.419 3.217 32.953 1.00122.54 C
ATOM 10 O3' G B 34 7.132 2.052 32.159 1.00122.28 O
ATOM 11 C2' G B 34 6.184 3.886 33.568 1.00122.24 C
ATOM 12 O2' G B 34 4.997 3.816 32.792 1.00121.66 O
ATOM 13 C1' G B 34 6.029 3.117 34.884 1.00122.21 C
ATOM 14 N9 G B 34 5.655 3.980 36.002 1.00121.66 N
ATOM 15 C8 G B 34 6.472 4.657 36.880 1.00121.22 C
ATOM 16 N7 G B 34 5.817 5.348 37.769 1.00121.07 N
ATOM 17 C5 G B 34 4.488 5.113 37.456 1.00121.00 C
ATOM 18 C6 G B 34 3.311 5.591 38.066 1.00121.41 C
ATOM 19 O6 G B 34 3.224 6.345 39.043 1.00122.42 O
ATOM 20 N1 G B 34 2.160 5.113 37.431 1.00121.68 N
ATOM 21 C2 G B 34 2.153 4.271 36.337 1.00121.75 C
ATOM 22 N2 G B 34 0.958 3.900 35.852 1.00121.73 N
ATOM 23 N3 G B 34 3.256 3.818 35.759 1.00121.31 N
ATOM 24 C4 G B 34 4.373 4.278 36.371 1.00121.16 C
ATOM 25 P A B 35 7.949 1.810 30.800 1.00122.40 P
ATOM 26 OP1 A B 35 9.357 1.556 31.167 1.00122.07 O
ATOM 27 OP2 A B 35 7.655 2.945 29.893 1.00122.05 O
ATOM 28 O5' A B 35 7.269 0.481 30.193 1.00121.88 O
TER
ATOM 2 P A A 35 7.949 1.810 30.800 1.00122.40 P
ATOM 3 OP1 A A 35 9.357 1.556 31.167 1.00122.07 O
ATOM 4 OP2 A A 35 7.655 2.945 29.893 1.00122.05 O
ATOM 5 O5' A A 35 7.269 0.481 30.193 1.00121.88 O
ATOM 6 C5' A A 35 7.488 -0.819 30.761 1.00120.64 C
ATOM 7 C4' A A 35 6.338 -1.796 30.507 1.00119.97 C
ATOM 8 O4' A A 35 5.275 -1.534 31.452 1.00118.84 O
ATOM 9 C3' A A 35 5.652 -1.742 29.141 1.00120.56 C
ATOM 10 O3' A A 35 6.391 -2.513 28.172 1.00121.39 O
ATOM 11 C2' A A 35 4.211 -2.224 29.424 1.00119.93 C
ATOM 12 O2' A A 35 3.933 -3.616 29.341 1.00119.60 O
ATOM 13 C1' A A 35 4.005 -1.748 30.859 1.00118.65 C
ATOM 14 N9 A A 35 3.285 -0.495 30.954 1.00117.46 N
ATOM 15 C8 A A 35 3.740 0.659 31.535 1.00117.34 C
ATOM 16 N7 A A 35 2.882 1.643 31.475 1.00118.24 N
ATOM 17 C5 A A 35 1.797 1.096 30.799 1.00118.05 C
ATOM 18 C6 A A 35 0.550 1.641 30.414 1.00118.19 C
ATOM 19 N6 A A 35 0.184 2.907 30.673 1.00118.09 N
ATOM 20 N1 A A 35 -0.303 0.828 29.748 1.00118.61 N
ATOM 21 C2 A A 35 0.065 -0.436 29.494 1.00118.45 C
ATOM 22 N3 A A 35 1.205 -1.063 29.807 1.00117.75 N
ATOM 23 C4 A A 35 2.031 -0.229 30.467 1.00117.36 C
ATOM 24 P A A 36 6.690 -1.913 26.718 1.00121.93 P
ATOM 25 OP1 A A 36 7.391 -2.928 25.905 1.00120.78 O
ATOM 26 OP2 A A 36 7.268 -0.553 26.860 1.00121.40 O
ATOM 27 O5' A A 36 5.199 -1.781 26.185 1.00122.36 O
TER
ATOM 1 O3' C B 33 11.276 2.078 37.506 1.00124.08 O
ATOM 2 P G B 34 10.594 2.048 36.054 1.00123.53 P
ATOM 3 OP1 G B 34 9.618 0.934 36.016 1.00123.54 O
ATOM 4 OP2 G B 34 11.695 2.069 35.062 1.00123.38 O
ATOM 5 O5' G B 34 9.794 3.438 35.990 1.00122.66 O
ATOM 6 C5' G B 34 9.182 3.861 34.758 1.00123.12 C
ATOM 7 C4' G B 34 8.235 2.810 34.181 1.00122.86 C
ATOM 8 O4' G B 34 7.252 2.466 35.187 1.00122.10 O
ATOM 9 C3' G B 34 7.419 3.217 32.953 1.00122.54 C
ATOM 10 O3' G B 34 7.132 2.052 32.159 1.00122.28 O
ATOM 11 C2' G B 34 6.184 3.886 33.568 1.00122.24 C
ATOM 12 O2' G B 34 4.997 3.816 32.792 1.00121.66 O
ATOM 13 C1' G B 34 6.029 3.117 34.884 1.00122.21 C
ATOM 14 N9 G B 34 5.655 3.980 36.002 1.00121.66 N
ATOM 15 C8 G B 34 6.472 4.657 36.880 1.00121.22 C
ATOM 16 N7 G B 34 5.817 5.348 37.769 1.00121.07 N
ATOM 17 C5 G B 34 4.488 5.113 37.456 1.00121.00 C
ATOM 18 C6 G B 34 3.311 5.591 38.066 1.00121.41 C
ATOM 19 O6 G B 34 3.224 6.345 39.043 1.00122.42 O
ATOM 20 N1 G B 34 2.160 5.113 37.431 1.00121.68 N
ATOM 21 C2 G B 34 2.153 4.271 36.337 1.00121.75 C
ATOM 22 N2 G B 34 0.958 3.900 35.852 1.00121.73 N
ATOM 23 N3 G B 34 3.256 3.818 35.759 1.00121.31 N
ATOM 24 C4 G B 34 4.373 4.278 36.371 1.00121.16 C
ATOM 25 P A B 35 7.949 1.810 30.800 1.00122.40 P
ATOM 26 OP1 A B 35 9.357 1.556 31.167 1.00122.07 O
ATOM 27 OP2 A B 35 7.655 2.945 29.893 1.00122.05 O
ATOM 28 O5' A B 35 7.269 0.481 30.193 1.00121.88 O
TER
Atoms:
OP1: (9.357,1.556,31.167)
OP2: (7.655,2.945,29.893)
C3': (5.652,-1.742,29.141)
C1': (4.005,-1.748,30.859)
C5': (7.488,-0.819,30.761)
O4': (5.275,-1.534,31.452)
C8: (3.740,0.659,31.535)
O2': (3.933,-3.616,29.341)
C6: (0.550,1.641,30.414)
C5: (1.797,1.096,30.799)
C4: (2.031,-0.229,30.467)
P: (7.949,1.810,30.800)
C4': (6.338,-1.796,30.507)
C2': (4.211,-2.224,29.424)
C2: (0.065,-0.436,29.494)
N1: (-0.303,0.828,29.748)
N3: (1.205,-1.063,29.807)
N6: (0.184,2.907,30.673)
N7: (2.882,1.643,31.475)
N9: (3.285,-0.495,30.954)
O5': (7.269,0.481,30.193)
O3': (6.391,-2.513,28.172)
OP2: (7.655,2.945,29.893)
C3': (5.652,-1.742,29.141)
C1': (4.005,-1.748,30.859)
C5': (7.488,-0.819,30.761)
O4': (5.275,-1.534,31.452)
C8: (3.740,0.659,31.535)
O2': (3.933,-3.616,29.341)
C6: (0.550,1.641,30.414)
C5: (1.797,1.096,30.799)
C4: (2.031,-0.229,30.467)
P: (7.949,1.810,30.800)
C4': (6.338,-1.796,30.507)
C2': (4.211,-2.224,29.424)
C2: (0.065,-0.436,29.494)
N1: (-0.303,0.828,29.748)
N3: (1.205,-1.063,29.807)
N6: (0.184,2.907,30.673)
N7: (2.882,1.643,31.475)
N9: (3.285,-0.495,30.954)
O5': (7.269,0.481,30.193)
O3': (6.391,-2.513,28.172)
OP1: (9.618,0.934,36.016)
OP2: (11.695,2.069,35.062)
C3': (7.419,3.217,32.953)
C1': (6.029,3.117,34.884)
C5': (9.182,3.861,34.758)
O6: (3.224,6.345,39.043)
O4': (7.252,2.466,35.187)
C8: (6.472,4.657,36.880)
C2: (2.153,4.271,36.337)
C6: (3.311,5.591,38.066)
C5: (4.488,5.113,37.456)
C4: (4.373,4.278,36.371)
P: (10.594,2.048,36.054)
C4': (8.235,2.810,34.181)
C2': (6.184,3.886,33.568)
O2': (4.997,3.816,32.792)
N1: (2.160,5.113,37.431)
N2: (0.958,3.900,35.852)
N3: (3.256,3.818,35.759)
N7: (5.817,5.348,37.769)
N9: (5.655,3.980,36.002)
O5': (9.794,3.438,35.990)
O3': (7.132,2.052,32.159)
OP2: (11.695,2.069,35.062)
C3': (7.419,3.217,32.953)
C1': (6.029,3.117,34.884)
C5': (9.182,3.861,34.758)
O6: (3.224,6.345,39.043)
O4': (7.252,2.466,35.187)
C8: (6.472,4.657,36.880)
C2: (2.153,4.271,36.337)
C6: (3.311,5.591,38.066)
C5: (4.488,5.113,37.456)
C4: (4.373,4.278,36.371)
P: (10.594,2.048,36.054)
C4': (8.235,2.810,34.181)
C2': (6.184,3.886,33.568)
O2': (4.997,3.816,32.792)
N1: (2.160,5.113,37.431)
N2: (0.958,3.900,35.852)
N3: (3.256,3.818,35.759)
N7: (5.817,5.348,37.769)
N9: (5.655,3.980,36.002)
O5': (9.794,3.438,35.990)
O3': (7.132,2.052,32.159)
Image (generated by PyMOL):