Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DUQ:H4:H3
Extra
PDB:
ATOM 1 O3' G A 3 -0.664 34.072 0.389 1.00 63.37 O
ATOM 2 P A A 4 0.303 34.715 1.500 1.00 71.19 P
ATOM 3 OP1 A A 4 0.876 35.972 0.947 1.00 48.92 O
ATOM 4 OP2 A A 4 1.197 33.601 1.948 1.00 55.22 O
ATOM 5 O5' A A 4 -0.688 35.148 2.670 1.00 59.63 O
ATOM 6 C5' A A 4 -0.588 34.615 3.980 1.00 60.50 C
ATOM 7 C4' A A 4 -1.968 34.422 4.546 1.00 48.15 C
ATOM 8 O4' A A 4 -2.738 35.629 4.308 1.00 40.37 O
ATOM 9 C3' A A 4 -2.739 33.362 3.816 1.00 45.28 C
ATOM 10 O3' A A 4 -2.496 32.144 4.450 1.00 57.52 O
ATOM 11 C2' A A 4 -4.184 33.786 4.012 1.00 37.05 C
ATOM 12 O2' A A 4 -4.691 33.433 5.279 1.00 42.18 O
ATOM 13 C1' A A 4 -4.056 35.298 3.920 1.00 37.79 C
ATOM 14 N9 A A 4 -4.263 35.806 2.572 1.00 36.76 N
ATOM 15 C8 A A 4 -3.593 35.485 1.426 1.00 31.59 C
ATOM 16 N7 A A 4 -4.025 36.126 0.362 1.00 38.25 N
ATOM 17 C5 A A 4 -5.046 36.921 0.844 1.00 28.79 C
ATOM 18 C6 A A 4 -5.906 37.820 0.226 1.00 28.25 C
ATOM 19 N6 A A 4 -5.867 38.122 -1.078 1.00 40.41 N
ATOM 20 N1 A A 4 -6.829 38.427 0.999 1.00 25.54 N
ATOM 21 C2 A A 4 -6.859 38.146 2.314 1.00 27.49 C
ATOM 22 N3 A A 4 -6.104 37.321 3.008 1.00 36.32 N
ATOM 23 C4 A A 4 -5.206 36.732 2.207 1.00 39.69 C
ATOM 24 P C A 5 -2.695 30.793 3.627 1.00 66.17 P
ATOM 25 OP1 C A 5 -2.970 31.165 2.213 1.00 74.42 O
ATOM 26 OP2 C A 5 -3.615 29.888 4.351 1.00 45.69 O
ATOM 27 O5' C A 5 -1.263 30.154 3.726 1.00 58.99 O
TER
ATOM 1 O3' U B 2 0.632 36.058 -5.037 1.00 44.20 O
ATOM 2 P G B 3 1.242 36.184 -3.561 1.00 60.30 P
ATOM 3 OP1 G B 3 0.619 37.372 -2.936 1.00 66.61 O
ATOM 4 OP2 G B 3 2.732 36.075 -3.617 1.00 49.13 O
ATOM 5 O5' G B 3 0.677 34.915 -2.812 1.00 40.72 O
ATOM 6 C5' G B 3 -0.716 34.724 -2.704 1.00 53.38 C
ATOM 7 C4' G B 3 -0.999 33.493 -1.898 1.00 55.19 C
ATOM 8 O4' G B 3 -0.752 32.311 -2.689 1.00 52.08 O
ATOM 9 C3' G B 3 -0.114 33.314 -0.681 1.00 54.26 C
ATOM 10 O3' G B 3 -0.664 34.072 0.389 1.00 63.37 O
ATOM 11 C2' G B 3 -0.274 31.829 -0.414 1.00 50.21 C
ATOM 12 O2' G B 3 -1.507 31.634 0.240 1.00 51.20 O
ATOM 13 C1' G B 3 -0.332 31.263 -1.840 1.00 48.09 C
ATOM 14 N9 G B 3 0.954 30.796 -2.336 1.00 48.50 N
ATOM 15 C8 G B 3 1.924 31.547 -2.959 1.00 44.57 C
ATOM 16 N7 G B 3 2.992 30.859 -3.253 1.00 29.99 N
ATOM 17 C5 G B 3 2.704 29.578 -2.810 1.00 35.28 C
ATOM 18 C6 G B 3 3.488 28.394 -2.849 1.00 34.24 C
ATOM 19 O6 G B 3 4.626 28.234 -3.299 1.00 39.84 O
ATOM 20 N1 G B 3 2.814 27.317 -2.291 1.00 32.02 N
ATOM 21 C2 G B 3 1.550 27.373 -1.762 1.00 46.33 C
ATOM 22 N2 G B 3 1.076 26.217 -1.280 1.00 43.94 N
ATOM 23 N3 G B 3 0.808 28.478 -1.714 1.00 29.07 N
ATOM 24 C4 G B 3 1.442 29.525 -2.253 1.00 31.92 C
ATOM 25 P A B 4 0.303 34.715 1.500 1.00 71.19 P
ATOM 26 OP1 A B 4 0.876 35.972 0.947 1.00 48.92 O
ATOM 27 OP2 A B 4 1.197 33.601 1.948 1.00 55.22 O
ATOM 28 O5' A B 4 -0.688 35.148 2.670 1.00 59.63 O
TER
ATOM 2 P A A 4 0.303 34.715 1.500 1.00 71.19 P
ATOM 3 OP1 A A 4 0.876 35.972 0.947 1.00 48.92 O
ATOM 4 OP2 A A 4 1.197 33.601 1.948 1.00 55.22 O
ATOM 5 O5' A A 4 -0.688 35.148 2.670 1.00 59.63 O
ATOM 6 C5' A A 4 -0.588 34.615 3.980 1.00 60.50 C
ATOM 7 C4' A A 4 -1.968 34.422 4.546 1.00 48.15 C
ATOM 8 O4' A A 4 -2.738 35.629 4.308 1.00 40.37 O
ATOM 9 C3' A A 4 -2.739 33.362 3.816 1.00 45.28 C
ATOM 10 O3' A A 4 -2.496 32.144 4.450 1.00 57.52 O
ATOM 11 C2' A A 4 -4.184 33.786 4.012 1.00 37.05 C
ATOM 12 O2' A A 4 -4.691 33.433 5.279 1.00 42.18 O
ATOM 13 C1' A A 4 -4.056 35.298 3.920 1.00 37.79 C
ATOM 14 N9 A A 4 -4.263 35.806 2.572 1.00 36.76 N
ATOM 15 C8 A A 4 -3.593 35.485 1.426 1.00 31.59 C
ATOM 16 N7 A A 4 -4.025 36.126 0.362 1.00 38.25 N
ATOM 17 C5 A A 4 -5.046 36.921 0.844 1.00 28.79 C
ATOM 18 C6 A A 4 -5.906 37.820 0.226 1.00 28.25 C
ATOM 19 N6 A A 4 -5.867 38.122 -1.078 1.00 40.41 N
ATOM 20 N1 A A 4 -6.829 38.427 0.999 1.00 25.54 N
ATOM 21 C2 A A 4 -6.859 38.146 2.314 1.00 27.49 C
ATOM 22 N3 A A 4 -6.104 37.321 3.008 1.00 36.32 N
ATOM 23 C4 A A 4 -5.206 36.732 2.207 1.00 39.69 C
ATOM 24 P C A 5 -2.695 30.793 3.627 1.00 66.17 P
ATOM 25 OP1 C A 5 -2.970 31.165 2.213 1.00 74.42 O
ATOM 26 OP2 C A 5 -3.615 29.888 4.351 1.00 45.69 O
ATOM 27 O5' C A 5 -1.263 30.154 3.726 1.00 58.99 O
TER
ATOM 1 O3' U B 2 0.632 36.058 -5.037 1.00 44.20 O
ATOM 2 P G B 3 1.242 36.184 -3.561 1.00 60.30 P
ATOM 3 OP1 G B 3 0.619 37.372 -2.936 1.00 66.61 O
ATOM 4 OP2 G B 3 2.732 36.075 -3.617 1.00 49.13 O
ATOM 5 O5' G B 3 0.677 34.915 -2.812 1.00 40.72 O
ATOM 6 C5' G B 3 -0.716 34.724 -2.704 1.00 53.38 C
ATOM 7 C4' G B 3 -0.999 33.493 -1.898 1.00 55.19 C
ATOM 8 O4' G B 3 -0.752 32.311 -2.689 1.00 52.08 O
ATOM 9 C3' G B 3 -0.114 33.314 -0.681 1.00 54.26 C
ATOM 10 O3' G B 3 -0.664 34.072 0.389 1.00 63.37 O
ATOM 11 C2' G B 3 -0.274 31.829 -0.414 1.00 50.21 C
ATOM 12 O2' G B 3 -1.507 31.634 0.240 1.00 51.20 O
ATOM 13 C1' G B 3 -0.332 31.263 -1.840 1.00 48.09 C
ATOM 14 N9 G B 3 0.954 30.796 -2.336 1.00 48.50 N
ATOM 15 C8 G B 3 1.924 31.547 -2.959 1.00 44.57 C
ATOM 16 N7 G B 3 2.992 30.859 -3.253 1.00 29.99 N
ATOM 17 C5 G B 3 2.704 29.578 -2.810 1.00 35.28 C
ATOM 18 C6 G B 3 3.488 28.394 -2.849 1.00 34.24 C
ATOM 19 O6 G B 3 4.626 28.234 -3.299 1.00 39.84 O
ATOM 20 N1 G B 3 2.814 27.317 -2.291 1.00 32.02 N
ATOM 21 C2 G B 3 1.550 27.373 -1.762 1.00 46.33 C
ATOM 22 N2 G B 3 1.076 26.217 -1.280 1.00 43.94 N
ATOM 23 N3 G B 3 0.808 28.478 -1.714 1.00 29.07 N
ATOM 24 C4 G B 3 1.442 29.525 -2.253 1.00 31.92 C
ATOM 25 P A B 4 0.303 34.715 1.500 1.00 71.19 P
ATOM 26 OP1 A B 4 0.876 35.972 0.947 1.00 48.92 O
ATOM 27 OP2 A B 4 1.197 33.601 1.948 1.00 55.22 O
ATOM 28 O5' A B 4 -0.688 35.148 2.670 1.00 59.63 O
TER
Atoms:
OP1: (0.876,35.972,0.947)
OP2: (1.197,33.601,1.948)
C3': (-2.739,33.362,3.816)
C1': (-4.056,35.298,3.920)
C5': (-0.588,34.615,3.980)
O4': (-2.738,35.629,4.308)
C8: (-3.593,35.485,1.426)
O2': (-4.691,33.433,5.279)
C6: (-5.906,37.820,0.226)
C5: (-5.046,36.921,0.844)
C4: (-5.206,36.732,2.207)
P: (0.303,34.715,1.500)
C4': (-1.968,34.422,4.546)
C2': (-4.184,33.786,4.012)
C2: (-6.859,38.146,2.314)
N1: (-6.829,38.427,0.999)
N3: (-6.104,37.321,3.008)
N6: (-5.867,38.122,-1.078)
N7: (-4.025,36.126,0.362)
N9: (-4.263,35.806,2.572)
O5': (-0.688,35.148,2.670)
O3': (-2.496,32.144,4.450)
OP2: (1.197,33.601,1.948)
C3': (-2.739,33.362,3.816)
C1': (-4.056,35.298,3.920)
C5': (-0.588,34.615,3.980)
O4': (-2.738,35.629,4.308)
C8: (-3.593,35.485,1.426)
O2': (-4.691,33.433,5.279)
C6: (-5.906,37.820,0.226)
C5: (-5.046,36.921,0.844)
C4: (-5.206,36.732,2.207)
P: (0.303,34.715,1.500)
C4': (-1.968,34.422,4.546)
C2': (-4.184,33.786,4.012)
C2: (-6.859,38.146,2.314)
N1: (-6.829,38.427,0.999)
N3: (-6.104,37.321,3.008)
N6: (-5.867,38.122,-1.078)
N7: (-4.025,36.126,0.362)
N9: (-4.263,35.806,2.572)
O5': (-0.688,35.148,2.670)
O3': (-2.496,32.144,4.450)
OP1: (0.619,37.372,-2.936)
OP2: (2.732,36.075,-3.617)
C3': (-0.114,33.314,-0.681)
C1': (-0.332,31.263,-1.840)
C5': (-0.716,34.724,-2.704)
O6: (4.626,28.234,-3.299)
O4': (-0.752,32.311,-2.689)
C8: (1.924,31.547,-2.959)
C2: (1.550,27.373,-1.762)
C6: (3.488,28.394,-2.849)
C5: (2.704,29.578,-2.810)
C4: (1.442,29.525,-2.253)
P: (1.242,36.184,-3.561)
C4': (-0.999,33.493,-1.898)
C2': (-0.274,31.829,-0.414)
O2': (-1.507,31.634,0.240)
N1: (2.814,27.317,-2.291)
N2: (1.076,26.217,-1.280)
N3: (0.808,28.478,-1.714)
N7: (2.992,30.859,-3.253)
N9: (0.954,30.796,-2.336)
O5': (0.677,34.915,-2.812)
O3': (-0.664,34.072,0.389)
OP2: (2.732,36.075,-3.617)
C3': (-0.114,33.314,-0.681)
C1': (-0.332,31.263,-1.840)
C5': (-0.716,34.724,-2.704)
O6: (4.626,28.234,-3.299)
O4': (-0.752,32.311,-2.689)
C8: (1.924,31.547,-2.959)
C2: (1.550,27.373,-1.762)
C6: (3.488,28.394,-2.849)
C5: (2.704,29.578,-2.810)
C4: (1.442,29.525,-2.253)
P: (1.242,36.184,-3.561)
C4': (-0.999,33.493,-1.898)
C2': (-0.274,31.829,-0.414)
O2': (-1.507,31.634,0.240)
N1: (2.814,27.317,-2.291)
N2: (1.076,26.217,-1.280)
N3: (0.808,28.478,-1.714)
N7: (2.992,30.859,-3.253)
N9: (0.954,30.796,-2.336)
O5': (0.677,34.915,-2.812)
O3': (-0.664,34.072,0.389)
Image (generated by PyMOL):