Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2023:A569
Extra
PDB:
ATOM 1 O3' G A2022 -90.366 -79.190 0.006 1.00 0.01 O
ATOM 2 P A A2023 -90.980 -77.735 0.198 1.00 0.01 P
ATOM 3 OP1 A A2023 -92.015 -77.815 1.230 1.00 0.01 O
ATOM 4 OP2 A A2023 -91.362 -77.245 -1.129 1.00 0.01 O
ATOM 5 O5' A A2023 -89.744 -76.915 0.732 1.00 0.01 O
ATOM 6 C5' A A2023 -89.381 -76.935 2.103 1.00 0.01 C
ATOM 7 C4' A A2023 -88.165 -76.085 2.352 1.00 0.01 C
ATOM 8 O4' A A2023 -88.135 -75.660 3.740 1.00 0.01 O
ATOM 9 C3' A A2023 -86.823 -76.753 2.079 1.00 0.01 C
ATOM 10 O3' A A2023 -85.984 -75.853 1.355 1.00 0.01 O
ATOM 11 C2' A A2023 -86.270 -76.964 3.491 1.00 0.01 C
ATOM 12 O2' A A2023 -84.881 -76.985 3.583 1.00 0.01 O
ATOM 13 C1' A A2023 -86.828 -75.774 4.211 1.00 0.01 C
ATOM 14 N9 A A2023 -86.840 -75.890 5.677 1.00 0.01 N
ATOM 15 C8 A A2023 -87.414 -76.826 6.477 1.00 0.01 C
ATOM 16 N7 A A2023 -87.246 -76.606 7.754 1.00 0.01 N
ATOM 17 C5 A A2023 -86.495 -75.457 7.846 1.00 0.01 C
ATOM 18 C6 A A2023 -85.962 -74.713 8.942 1.00 0.01 C
ATOM 19 N6 A A2023 -86.072 -74.961 10.268 1.00 0.01 N
ATOM 20 N1 A A2023 -85.268 -73.610 8.599 1.00 0.01 N
ATOM 21 C2 A A2023 -85.101 -73.302 7.309 1.00 0.01 C
ATOM 22 N3 A A2023 -85.530 -73.927 6.226 1.00 0.01 N
ATOM 23 C4 A A2023 -86.239 -75.013 6.560 1.00 0.01 C
ATOM 24 P A A2024 -85.648 -76.091 -0.205 1.00 0.01 P
ATOM 25 OP1 A A2024 -85.311 -77.486 -0.362 1.00 0.01 O
ATOM 26 OP2 A A2024 -84.662 -75.071 -0.589 1.00 0.01 O
ATOM 27 O5' A A2024 -87.024 -75.806 -0.924 1.00 0.01 O
TER
ATOM 1 O3' U B 568 -93.014 -77.788 13.198 1.00 0.01 O
ATOM 2 P G B 569 -91.644 -78.427 13.595 1.00 0.01 P
ATOM 3 OP1 G B 569 -91.935 -79.625 14.344 1.00 0.01 O
ATOM 4 OP2 G B 569 -90.873 -77.396 14.212 1.00 0.01 O
ATOM 5 O5' G B 569 -91.027 -78.795 12.212 1.00 0.01 O
ATOM 6 C5' G B 569 -91.759 -79.564 11.295 1.00 0.01 C
ATOM 7 C4' G B 569 -91.241 -79.398 9.895 1.00 0.01 C
ATOM 8 O4' G B 569 -91.592 -78.095 9.396 1.00 0.01 O
ATOM 9 C3' G B 569 -89.740 -79.479 9.729 1.00 0.01 C
ATOM 10 O3' G B 569 -89.288 -80.808 9.641 1.00 0.01 O
ATOM 11 C2' G B 569 -89.520 -78.711 8.458 1.00 0.01 C
ATOM 12 O2' G B 569 -89.781 -79.536 7.357 1.00 0.01 O
ATOM 13 C1' G B 569 -90.603 -77.637 8.534 1.00 0.01 C
ATOM 14 N9 G B 569 -90.079 -76.353 9.042 1.00 0.01 N
ATOM 15 C8 G B 569 -89.709 -76.048 10.303 1.00 0.01 C
ATOM 16 N7 G B 569 -89.252 -74.851 10.406 1.00 0.01 N
ATOM 17 C5 G B 569 -89.329 -74.314 9.142 1.00 0.01 C
ATOM 18 C6 G B 569 -88.986 -73.029 8.642 1.00 0.01 C
ATOM 19 O6 G B 569 -88.515 -72.033 9.215 1.00 0.01 O
ATOM 20 N1 G B 569 -89.241 -72.944 7.296 1.00 0.01 N
ATOM 21 C2 G B 569 -89.756 -73.943 6.537 1.00 0.01 C
ATOM 22 N2 G B 569 -89.941 -73.688 5.250 1.00 0.01 N
ATOM 23 N3 G B 569 -90.072 -75.116 6.992 1.00 0.01 N
ATOM 24 C4 G B 569 -89.831 -75.238 8.295 1.00 0.01 C
ATOM 25 P U B 570 -87.782 -81.190 9.998 1.00 0.01 P
ATOM 26 OP1 U B 570 -87.655 -82.660 9.829 1.00 0.01 O
ATOM 27 OP2 U B 570 -87.486 -80.595 11.309 1.00 0.01 O
ATOM 28 O5' U B 570 -86.948 -80.461 8.874 1.00 0.01 O
TER
ATOM 2 P A A2023 -90.980 -77.735 0.198 1.00 0.01 P
ATOM 3 OP1 A A2023 -92.015 -77.815 1.230 1.00 0.01 O
ATOM 4 OP2 A A2023 -91.362 -77.245 -1.129 1.00 0.01 O
ATOM 5 O5' A A2023 -89.744 -76.915 0.732 1.00 0.01 O
ATOM 6 C5' A A2023 -89.381 -76.935 2.103 1.00 0.01 C
ATOM 7 C4' A A2023 -88.165 -76.085 2.352 1.00 0.01 C
ATOM 8 O4' A A2023 -88.135 -75.660 3.740 1.00 0.01 O
ATOM 9 C3' A A2023 -86.823 -76.753 2.079 1.00 0.01 C
ATOM 10 O3' A A2023 -85.984 -75.853 1.355 1.00 0.01 O
ATOM 11 C2' A A2023 -86.270 -76.964 3.491 1.00 0.01 C
ATOM 12 O2' A A2023 -84.881 -76.985 3.583 1.00 0.01 O
ATOM 13 C1' A A2023 -86.828 -75.774 4.211 1.00 0.01 C
ATOM 14 N9 A A2023 -86.840 -75.890 5.677 1.00 0.01 N
ATOM 15 C8 A A2023 -87.414 -76.826 6.477 1.00 0.01 C
ATOM 16 N7 A A2023 -87.246 -76.606 7.754 1.00 0.01 N
ATOM 17 C5 A A2023 -86.495 -75.457 7.846 1.00 0.01 C
ATOM 18 C6 A A2023 -85.962 -74.713 8.942 1.00 0.01 C
ATOM 19 N6 A A2023 -86.072 -74.961 10.268 1.00 0.01 N
ATOM 20 N1 A A2023 -85.268 -73.610 8.599 1.00 0.01 N
ATOM 21 C2 A A2023 -85.101 -73.302 7.309 1.00 0.01 C
ATOM 22 N3 A A2023 -85.530 -73.927 6.226 1.00 0.01 N
ATOM 23 C4 A A2023 -86.239 -75.013 6.560 1.00 0.01 C
ATOM 24 P A A2024 -85.648 -76.091 -0.205 1.00 0.01 P
ATOM 25 OP1 A A2024 -85.311 -77.486 -0.362 1.00 0.01 O
ATOM 26 OP2 A A2024 -84.662 -75.071 -0.589 1.00 0.01 O
ATOM 27 O5' A A2024 -87.024 -75.806 -0.924 1.00 0.01 O
TER
ATOM 1 O3' U B 568 -93.014 -77.788 13.198 1.00 0.01 O
ATOM 2 P G B 569 -91.644 -78.427 13.595 1.00 0.01 P
ATOM 3 OP1 G B 569 -91.935 -79.625 14.344 1.00 0.01 O
ATOM 4 OP2 G B 569 -90.873 -77.396 14.212 1.00 0.01 O
ATOM 5 O5' G B 569 -91.027 -78.795 12.212 1.00 0.01 O
ATOM 6 C5' G B 569 -91.759 -79.564 11.295 1.00 0.01 C
ATOM 7 C4' G B 569 -91.241 -79.398 9.895 1.00 0.01 C
ATOM 8 O4' G B 569 -91.592 -78.095 9.396 1.00 0.01 O
ATOM 9 C3' G B 569 -89.740 -79.479 9.729 1.00 0.01 C
ATOM 10 O3' G B 569 -89.288 -80.808 9.641 1.00 0.01 O
ATOM 11 C2' G B 569 -89.520 -78.711 8.458 1.00 0.01 C
ATOM 12 O2' G B 569 -89.781 -79.536 7.357 1.00 0.01 O
ATOM 13 C1' G B 569 -90.603 -77.637 8.534 1.00 0.01 C
ATOM 14 N9 G B 569 -90.079 -76.353 9.042 1.00 0.01 N
ATOM 15 C8 G B 569 -89.709 -76.048 10.303 1.00 0.01 C
ATOM 16 N7 G B 569 -89.252 -74.851 10.406 1.00 0.01 N
ATOM 17 C5 G B 569 -89.329 -74.314 9.142 1.00 0.01 C
ATOM 18 C6 G B 569 -88.986 -73.029 8.642 1.00 0.01 C
ATOM 19 O6 G B 569 -88.515 -72.033 9.215 1.00 0.01 O
ATOM 20 N1 G B 569 -89.241 -72.944 7.296 1.00 0.01 N
ATOM 21 C2 G B 569 -89.756 -73.943 6.537 1.00 0.01 C
ATOM 22 N2 G B 569 -89.941 -73.688 5.250 1.00 0.01 N
ATOM 23 N3 G B 569 -90.072 -75.116 6.992 1.00 0.01 N
ATOM 24 C4 G B 569 -89.831 -75.238 8.295 1.00 0.01 C
ATOM 25 P U B 570 -87.782 -81.190 9.998 1.00 0.01 P
ATOM 26 OP1 U B 570 -87.655 -82.660 9.829 1.00 0.01 O
ATOM 27 OP2 U B 570 -87.486 -80.595 11.309 1.00 0.01 O
ATOM 28 O5' U B 570 -86.948 -80.461 8.874 1.00 0.01 O
TER
Atoms:
OP1: (-92.015,-77.815,1.230)
OP2: (-91.362,-77.245,-1.129)
C3': (-86.823,-76.753,2.079)
C1': (-86.828,-75.774,4.211)
C5': (-89.381,-76.935,2.103)
O4': (-88.135,-75.660,3.740)
C8: (-87.414,-76.826,6.477)
O2': (-84.881,-76.985,3.583)
C6: (-85.962,-74.713,8.942)
C5: (-86.495,-75.457,7.846)
C4: (-86.239,-75.013,6.560)
P: (-90.980,-77.735,0.198)
C4': (-88.165,-76.085,2.352)
C2': (-86.270,-76.964,3.491)
C2: (-85.101,-73.302,7.309)
N1: (-85.268,-73.610,8.599)
N3: (-85.530,-73.927,6.226)
N6: (-86.072,-74.961,10.268)
N7: (-87.246,-76.606,7.754)
N9: (-86.840,-75.890,5.677)
O5': (-89.744,-76.915,0.732)
O3': (-85.984,-75.853,1.355)
OP2: (-91.362,-77.245,-1.129)
C3': (-86.823,-76.753,2.079)
C1': (-86.828,-75.774,4.211)
C5': (-89.381,-76.935,2.103)
O4': (-88.135,-75.660,3.740)
C8: (-87.414,-76.826,6.477)
O2': (-84.881,-76.985,3.583)
C6: (-85.962,-74.713,8.942)
C5: (-86.495,-75.457,7.846)
C4: (-86.239,-75.013,6.560)
P: (-90.980,-77.735,0.198)
C4': (-88.165,-76.085,2.352)
C2': (-86.270,-76.964,3.491)
C2: (-85.101,-73.302,7.309)
N1: (-85.268,-73.610,8.599)
N3: (-85.530,-73.927,6.226)
N6: (-86.072,-74.961,10.268)
N7: (-87.246,-76.606,7.754)
N9: (-86.840,-75.890,5.677)
O5': (-89.744,-76.915,0.732)
O3': (-85.984,-75.853,1.355)
OP1: (-91.935,-79.625,14.344)
OP2: (-90.873,-77.396,14.212)
C3': (-89.740,-79.479,9.729)
C1': (-90.603,-77.637,8.534)
C5': (-91.759,-79.564,11.295)
O6: (-88.515,-72.033,9.215)
O4': (-91.592,-78.095,9.396)
C8: (-89.709,-76.048,10.303)
C2: (-89.756,-73.943,6.537)
C6: (-88.986,-73.029,8.642)
C5: (-89.329,-74.314,9.142)
C4: (-89.831,-75.238,8.295)
P: (-91.644,-78.427,13.595)
C4': (-91.241,-79.398,9.895)
C2': (-89.520,-78.711,8.458)
O2': (-89.781,-79.536,7.357)
N1: (-89.241,-72.944,7.296)
N2: (-89.941,-73.688,5.250)
N3: (-90.072,-75.116,6.992)
N7: (-89.252,-74.851,10.406)
N9: (-90.079,-76.353,9.042)
O5': (-91.027,-78.795,12.212)
O3': (-89.288,-80.808,9.641)
OP2: (-90.873,-77.396,14.212)
C3': (-89.740,-79.479,9.729)
C1': (-90.603,-77.637,8.534)
C5': (-91.759,-79.564,11.295)
O6: (-88.515,-72.033,9.215)
O4': (-91.592,-78.095,9.396)
C8: (-89.709,-76.048,10.303)
C2: (-89.756,-73.943,6.537)
C6: (-88.986,-73.029,8.642)
C5: (-89.329,-74.314,9.142)
C4: (-89.831,-75.238,8.295)
P: (-91.644,-78.427,13.595)
C4': (-91.241,-79.398,9.895)
C2': (-89.520,-78.711,8.458)
O2': (-89.781,-79.536,7.357)
N1: (-89.241,-72.944,7.296)
N2: (-89.941,-73.688,5.250)
N3: (-90.072,-75.116,6.992)
N7: (-89.252,-74.851,10.406)
N9: (-90.079,-76.353,9.042)
O5': (-91.027,-78.795,12.212)
O3': (-89.288,-80.808,9.641)
Image (generated by PyMOL):