Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DUQ:D4:D3
Extra
PDB:
ATOM 1 O3' G A 3 -12.527 2.167 16.376 1.00 56.17 O
ATOM 2 P A A 4 -11.589 1.700 15.163 1.00 70.16 P
ATOM 3 OP1 A A 4 -10.889 0.447 15.601 1.00 41.85 O
ATOM 4 OP2 A A 4 -10.812 2.937 14.740 1.00 42.23 O
ATOM 5 O5' A A 4 -12.628 1.273 14.033 1.00 55.79 O
ATOM 6 C5' A A 4 -12.601 1.851 12.731 1.00 60.68 C
ATOM 7 C4' A A 4 -14.005 1.948 12.183 1.00 48.06 C
ATOM 8 O4' A A 4 -14.685 0.691 12.444 1.00 44.94 O
ATOM 9 C3' A A 4 -14.870 2.969 12.876 1.00 39.99 C
ATOM 10 O3' A A 4 -14.746 4.235 12.267 1.00 52.21 O
ATOM 11 C2' A A 4 -16.267 2.425 12.649 1.00 46.60 C
ATOM 12 O2' A A 4 -16.756 2.670 11.346 1.00 42.90 O
ATOM 13 C1' A A 4 -16.022 0.935 12.818 1.00 40.89 C
ATOM 14 N9 A A 4 -16.209 0.478 14.192 1.00 44.75 N
ATOM 15 C8 A A 4 -15.547 0.853 15.329 1.00 34.54 C
ATOM 16 N7 A A 4 -15.970 0.238 16.411 1.00 44.59 N
ATOM 17 C5 A A 4 -16.978 -0.596 15.950 1.00 35.86 C
ATOM 18 C6 A A 4 -17.825 -1.501 16.600 1.00 36.89 C
ATOM 19 N6 A A 4 -17.782 -1.749 17.906 1.00 38.72 N
ATOM 20 N1 A A 4 -18.734 -2.163 15.847 1.00 37.60 N
ATOM 21 C2 A A 4 -18.769 -1.920 14.532 1.00 37.58 C
ATOM 22 N3 A A 4 -18.018 -1.091 13.806 1.00 34.49 N
ATOM 23 C4 A A 4 -17.137 -0.455 14.587 1.00 35.18 C
ATOM 24 P C A 5 -14.829 5.549 13.189 1.00 61.67 P
ATOM 25 OP1 C A 5 -15.198 5.072 14.552 1.00 70.73 O
ATOM 26 OP2 C A 5 -15.612 6.638 12.549 1.00 43.16 O
ATOM 27 O5' C A 5 -13.321 6.026 13.219 1.00 58.59 O
TER
ATOM 1 O3' U B 2 -11.342 0.304 21.889 1.00 48.00 O
ATOM 2 P G B 3 -10.747 0.070 20.420 1.00 56.42 P
ATOM 3 OP1 G B 3 -11.468 -1.093 19.847 1.00 68.88 O
ATOM 4 OP2 G B 3 -9.261 0.049 20.491 1.00 41.13 O
ATOM 5 O5' G B 3 -11.250 1.323 19.610 1.00 40.93 O
ATOM 6 C5' G B 3 -12.629 1.487 19.406 1.00 47.18 C
ATOM 7 C4' G B 3 -12.890 2.739 18.629 1.00 47.85 C
ATOM 8 O4' G B 3 -12.659 3.907 19.442 1.00 38.50 O
ATOM 9 C3' G B 3 -11.995 2.947 17.434 1.00 45.31 C
ATOM 10 O3' G B 3 -12.527 2.167 16.376 1.00 56.17 O
ATOM 11 C2' G B 3 -12.202 4.433 17.185 1.00 44.42 C
ATOM 12 O2' G B 3 -13.446 4.643 16.559 1.00 54.28 O
ATOM 13 C1' G B 3 -12.262 4.976 18.615 1.00 38.49 C
ATOM 14 N9 G B 3 -10.968 5.443 19.101 1.00 48.18 N
ATOM 15 C8 G B 3 -10.002 4.701 19.739 1.00 40.70 C
ATOM 16 N7 G B 3 -8.936 5.393 20.032 1.00 31.84 N
ATOM 17 C5 G B 3 -9.214 6.666 19.557 1.00 32.57 C
ATOM 18 C6 G B 3 -8.418 7.856 19.575 1.00 32.73 C
ATOM 19 O6 G B 3 -7.274 8.019 20.031 1.00 33.89 O
ATOM 20 N1 G B 3 -9.088 8.927 18.991 1.00 27.29 N
ATOM 21 C2 G B 3 -10.355 8.860 18.465 1.00 32.75 C
ATOM 22 N2 G B 3 -10.814 9.990 17.951 1.00 30.58 N
ATOM 23 N3 G B 3 -11.110 7.755 18.446 1.00 27.43 N
ATOM 24 C4 G B 3 -10.475 6.713 18.997 1.00 26.02 C
ATOM 25 P A B 4 -11.589 1.700 15.163 1.00 70.16 P
ATOM 26 OP1 A B 4 -10.889 0.447 15.601 1.00 41.85 O
ATOM 27 OP2 A B 4 -10.812 2.937 14.740 1.00 42.23 O
ATOM 28 O5' A B 4 -12.628 1.273 14.033 1.00 55.79 O
TER
ATOM 2 P A A 4 -11.589 1.700 15.163 1.00 70.16 P
ATOM 3 OP1 A A 4 -10.889 0.447 15.601 1.00 41.85 O
ATOM 4 OP2 A A 4 -10.812 2.937 14.740 1.00 42.23 O
ATOM 5 O5' A A 4 -12.628 1.273 14.033 1.00 55.79 O
ATOM 6 C5' A A 4 -12.601 1.851 12.731 1.00 60.68 C
ATOM 7 C4' A A 4 -14.005 1.948 12.183 1.00 48.06 C
ATOM 8 O4' A A 4 -14.685 0.691 12.444 1.00 44.94 O
ATOM 9 C3' A A 4 -14.870 2.969 12.876 1.00 39.99 C
ATOM 10 O3' A A 4 -14.746 4.235 12.267 1.00 52.21 O
ATOM 11 C2' A A 4 -16.267 2.425 12.649 1.00 46.60 C
ATOM 12 O2' A A 4 -16.756 2.670 11.346 1.00 42.90 O
ATOM 13 C1' A A 4 -16.022 0.935 12.818 1.00 40.89 C
ATOM 14 N9 A A 4 -16.209 0.478 14.192 1.00 44.75 N
ATOM 15 C8 A A 4 -15.547 0.853 15.329 1.00 34.54 C
ATOM 16 N7 A A 4 -15.970 0.238 16.411 1.00 44.59 N
ATOM 17 C5 A A 4 -16.978 -0.596 15.950 1.00 35.86 C
ATOM 18 C6 A A 4 -17.825 -1.501 16.600 1.00 36.89 C
ATOM 19 N6 A A 4 -17.782 -1.749 17.906 1.00 38.72 N
ATOM 20 N1 A A 4 -18.734 -2.163 15.847 1.00 37.60 N
ATOM 21 C2 A A 4 -18.769 -1.920 14.532 1.00 37.58 C
ATOM 22 N3 A A 4 -18.018 -1.091 13.806 1.00 34.49 N
ATOM 23 C4 A A 4 -17.137 -0.455 14.587 1.00 35.18 C
ATOM 24 P C A 5 -14.829 5.549 13.189 1.00 61.67 P
ATOM 25 OP1 C A 5 -15.198 5.072 14.552 1.00 70.73 O
ATOM 26 OP2 C A 5 -15.612 6.638 12.549 1.00 43.16 O
ATOM 27 O5' C A 5 -13.321 6.026 13.219 1.00 58.59 O
TER
ATOM 1 O3' U B 2 -11.342 0.304 21.889 1.00 48.00 O
ATOM 2 P G B 3 -10.747 0.070 20.420 1.00 56.42 P
ATOM 3 OP1 G B 3 -11.468 -1.093 19.847 1.00 68.88 O
ATOM 4 OP2 G B 3 -9.261 0.049 20.491 1.00 41.13 O
ATOM 5 O5' G B 3 -11.250 1.323 19.610 1.00 40.93 O
ATOM 6 C5' G B 3 -12.629 1.487 19.406 1.00 47.18 C
ATOM 7 C4' G B 3 -12.890 2.739 18.629 1.00 47.85 C
ATOM 8 O4' G B 3 -12.659 3.907 19.442 1.00 38.50 O
ATOM 9 C3' G B 3 -11.995 2.947 17.434 1.00 45.31 C
ATOM 10 O3' G B 3 -12.527 2.167 16.376 1.00 56.17 O
ATOM 11 C2' G B 3 -12.202 4.433 17.185 1.00 44.42 C
ATOM 12 O2' G B 3 -13.446 4.643 16.559 1.00 54.28 O
ATOM 13 C1' G B 3 -12.262 4.976 18.615 1.00 38.49 C
ATOM 14 N9 G B 3 -10.968 5.443 19.101 1.00 48.18 N
ATOM 15 C8 G B 3 -10.002 4.701 19.739 1.00 40.70 C
ATOM 16 N7 G B 3 -8.936 5.393 20.032 1.00 31.84 N
ATOM 17 C5 G B 3 -9.214 6.666 19.557 1.00 32.57 C
ATOM 18 C6 G B 3 -8.418 7.856 19.575 1.00 32.73 C
ATOM 19 O6 G B 3 -7.274 8.019 20.031 1.00 33.89 O
ATOM 20 N1 G B 3 -9.088 8.927 18.991 1.00 27.29 N
ATOM 21 C2 G B 3 -10.355 8.860 18.465 1.00 32.75 C
ATOM 22 N2 G B 3 -10.814 9.990 17.951 1.00 30.58 N
ATOM 23 N3 G B 3 -11.110 7.755 18.446 1.00 27.43 N
ATOM 24 C4 G B 3 -10.475 6.713 18.997 1.00 26.02 C
ATOM 25 P A B 4 -11.589 1.700 15.163 1.00 70.16 P
ATOM 26 OP1 A B 4 -10.889 0.447 15.601 1.00 41.85 O
ATOM 27 OP2 A B 4 -10.812 2.937 14.740 1.00 42.23 O
ATOM 28 O5' A B 4 -12.628 1.273 14.033 1.00 55.79 O
TER
Atoms:
OP1: (-10.889,0.447,15.601)
OP2: (-10.812,2.937,14.740)
C3': (-14.870,2.969,12.876)
C1': (-16.022,0.935,12.818)
C5': (-12.601,1.851,12.731)
O4': (-14.685,0.691,12.444)
C8: (-15.547,0.853,15.329)
O2': (-16.756,2.670,11.346)
C6: (-17.825,-1.501,16.600)
C5: (-16.978,-0.596,15.950)
C4: (-17.137,-0.455,14.587)
P: (-11.589,1.700,15.163)
C4': (-14.005,1.948,12.183)
C2': (-16.267,2.425,12.649)
C2: (-18.769,-1.920,14.532)
N1: (-18.734,-2.163,15.847)
N3: (-18.018,-1.091,13.806)
N6: (-17.782,-1.749,17.906)
N7: (-15.970,0.238,16.411)
N9: (-16.209,0.478,14.192)
O5': (-12.628,1.273,14.033)
O3': (-14.746,4.235,12.267)
OP2: (-10.812,2.937,14.740)
C3': (-14.870,2.969,12.876)
C1': (-16.022,0.935,12.818)
C5': (-12.601,1.851,12.731)
O4': (-14.685,0.691,12.444)
C8: (-15.547,0.853,15.329)
O2': (-16.756,2.670,11.346)
C6: (-17.825,-1.501,16.600)
C5: (-16.978,-0.596,15.950)
C4: (-17.137,-0.455,14.587)
P: (-11.589,1.700,15.163)
C4': (-14.005,1.948,12.183)
C2': (-16.267,2.425,12.649)
C2: (-18.769,-1.920,14.532)
N1: (-18.734,-2.163,15.847)
N3: (-18.018,-1.091,13.806)
N6: (-17.782,-1.749,17.906)
N7: (-15.970,0.238,16.411)
N9: (-16.209,0.478,14.192)
O5': (-12.628,1.273,14.033)
O3': (-14.746,4.235,12.267)
OP1: (-11.468,-1.093,19.847)
OP2: (-9.261,0.049,20.491)
C3': (-11.995,2.947,17.434)
C1': (-12.262,4.976,18.615)
C5': (-12.629,1.487,19.406)
O6: (-7.274,8.019,20.031)
O4': (-12.659,3.907,19.442)
C8: (-10.002,4.701,19.739)
C2: (-10.355,8.860,18.465)
C6: (-8.418,7.856,19.575)
C5: (-9.214,6.666,19.557)
C4: (-10.475,6.713,18.997)
P: (-10.747,0.070,20.420)
C4': (-12.890,2.739,18.629)
C2': (-12.202,4.433,17.185)
O2': (-13.446,4.643,16.559)
N1: (-9.088,8.927,18.991)
N2: (-10.814,9.990,17.951)
N3: (-11.110,7.755,18.446)
N7: (-8.936,5.393,20.032)
N9: (-10.968,5.443,19.101)
O5': (-11.250,1.323,19.610)
O3': (-12.527,2.167,16.376)
OP2: (-9.261,0.049,20.491)
C3': (-11.995,2.947,17.434)
C1': (-12.262,4.976,18.615)
C5': (-12.629,1.487,19.406)
O6: (-7.274,8.019,20.031)
O4': (-12.659,3.907,19.442)
C8: (-10.002,4.701,19.739)
C2: (-10.355,8.860,18.465)
C6: (-8.418,7.856,19.575)
C5: (-9.214,6.666,19.557)
C4: (-10.475,6.713,18.997)
P: (-10.747,0.070,20.420)
C4': (-12.890,2.739,18.629)
C2': (-12.202,4.433,17.185)
O2': (-13.446,4.643,16.559)
N1: (-9.088,8.927,18.991)
N2: (-10.814,9.990,17.951)
N3: (-11.110,7.755,18.446)
N7: (-8.936,5.393,20.032)
N9: (-10.968,5.443,19.101)
O5': (-11.250,1.323,19.610)
O3': (-12.527,2.167,16.376)
Image (generated by PyMOL):