Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1480:1479
Extra
PDB:
ATOM 1 O3' G A 479 47.409 -0.693 -35.500 1.00 95.95 O
ATOM 2 P U A 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 3 OP1 U A 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 4 OP2 U A 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 5 O5' U A 480 49.347 0.804 -35.989 1.00 82.46 O
ATOM 6 C5' U A 480 50.585 1.364 -35.592 1.00 82.17 C
ATOM 7 C4' U A 480 51.688 1.052 -36.584 1.00 82.74 C
ATOM 8 O4' U A 480 51.944 -0.374 -36.620 1.00 82.73 O
ATOM 9 C3' U A 480 51.427 1.399 -38.044 1.00 83.70 C
ATOM 10 O3' U A 480 51.580 2.768 -38.337 1.00 83.92 O
ATOM 11 C2' U A 480 52.421 0.510 -38.784 1.00 84.12 C
ATOM 12 O2' U A 480 53.716 1.085 -38.795 1.00 84.09 O
ATOM 13 C1' U A 480 52.440 -0.736 -37.898 1.00 83.53 C
ATOM 14 N1 U A 480 51.589 -1.783 -38.450 1.00 83.91 N
ATOM 15 C2 U A 480 52.175 -2.549 -39.416 1.00 84.51 C
ATOM 16 O2 U A 480 53.334 -2.387 -39.739 1.00 84.68 O
ATOM 17 N3 U A 480 51.374 -3.513 -39.956 1.00 84.90 N
ATOM 18 C4 U A 480 50.054 -3.760 -39.630 1.00 84.75 C
ATOM 19 O4 U A 480 49.437 -4.671 -40.198 1.00 85.16 O
ATOM 20 C5 U A 480 49.521 -2.894 -38.620 1.00 84.10 C
ATOM 21 C6 U A 480 50.282 -1.944 -38.074 1.00 83.72 C
ATOM 22 P A A 481 50.792 3.398 -39.577 1.00 96.93 P
ATOM 23 OP1 A A 481 51.089 4.847 -39.594 1.00 96.99 O
ATOM 24 OP2 A A 481 49.381 2.957 -39.459 1.00 96.91 O
ATOM 25 O5' A A 481 51.480 2.696 -40.823 1.00 97.70 O
TER
ATOM 1 O3' U B 478 44.409 -1.277 -30.283 1.00 80.78 O
ATOM 2 P G B 479 43.687 -0.987 -31.685 1.00 93.81 P
ATOM 3 OP1 G B 479 43.228 0.427 -31.656 1.00 93.85 O
ATOM 4 OP2 G B 479 42.683 -2.060 -31.916 1.00 94.01 O
ATOM 5 O5' G B 479 44.873 -1.144 -32.701 1.00 94.35 O
ATOM 6 C5' G B 479 45.742 -2.248 -32.638 1.00 94.24 C
ATOM 7 C4' G B 479 46.639 -2.237 -33.818 1.00 94.92 C
ATOM 8 O4' G B 479 46.577 -3.533 -34.468 1.00 95.33 O
ATOM 9 C3' G B 479 46.245 -1.203 -34.866 1.00 95.61 C
ATOM 10 O3' G B 479 47.409 -0.693 -35.500 1.00 95.95 O
ATOM 11 C2' G B 479 45.436 -2.022 -35.861 1.00 96.28 C
ATOM 12 O2' G B 479 45.405 -1.487 -37.172 1.00 97.13 O
ATOM 13 C1' G B 479 46.149 -3.380 -35.801 1.00 96.20 C
ATOM 14 N9 G B 479 45.293 -4.523 -36.128 1.00 96.47 N
ATOM 15 C8 G B 479 44.210 -4.935 -35.401 1.00 96.08 C
ATOM 16 N7 G B 479 43.626 -5.980 -35.914 1.00 96.46 N
ATOM 17 C5 G B 479 44.372 -6.285 -37.042 1.00 97.14 C
ATOM 18 C6 G B 479 44.220 -7.321 -37.998 1.00 97.80 C
ATOM 19 O6 G B 479 43.371 -8.209 -38.053 1.00 97.92 O
ATOM 20 N1 G B 479 45.193 -7.282 -38.978 1.00 98.37 N
ATOM 21 C2 G B 479 46.186 -6.345 -39.047 1.00 98.33 C
ATOM 22 N2 G B 479 47.039 -6.474 -40.073 1.00 98.96 N
ATOM 23 N3 G B 479 46.341 -5.372 -38.164 1.00 97.73 N
ATOM 24 C4 G B 479 45.410 -5.400 -37.187 1.00 97.15 C
ATOM 25 P U B 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 26 OP1 U B 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 27 OP2 U B 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 28 O5' U B 480 49.347 0.804 -35.989 1.00 82.46 O
TER
ATOM 2 P U A 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 3 OP1 U A 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 4 OP2 U A 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 5 O5' U A 480 49.347 0.804 -35.989 1.00 82.46 O
ATOM 6 C5' U A 480 50.585 1.364 -35.592 1.00 82.17 C
ATOM 7 C4' U A 480 51.688 1.052 -36.584 1.00 82.74 C
ATOM 8 O4' U A 480 51.944 -0.374 -36.620 1.00 82.73 O
ATOM 9 C3' U A 480 51.427 1.399 -38.044 1.00 83.70 C
ATOM 10 O3' U A 480 51.580 2.768 -38.337 1.00 83.92 O
ATOM 11 C2' U A 480 52.421 0.510 -38.784 1.00 84.12 C
ATOM 12 O2' U A 480 53.716 1.085 -38.795 1.00 84.09 O
ATOM 13 C1' U A 480 52.440 -0.736 -37.898 1.00 83.53 C
ATOM 14 N1 U A 480 51.589 -1.783 -38.450 1.00 83.91 N
ATOM 15 C2 U A 480 52.175 -2.549 -39.416 1.00 84.51 C
ATOM 16 O2 U A 480 53.334 -2.387 -39.739 1.00 84.68 O
ATOM 17 N3 U A 480 51.374 -3.513 -39.956 1.00 84.90 N
ATOM 18 C4 U A 480 50.054 -3.760 -39.630 1.00 84.75 C
ATOM 19 O4 U A 480 49.437 -4.671 -40.198 1.00 85.16 O
ATOM 20 C5 U A 480 49.521 -2.894 -38.620 1.00 84.10 C
ATOM 21 C6 U A 480 50.282 -1.944 -38.074 1.00 83.72 C
ATOM 22 P A A 481 50.792 3.398 -39.577 1.00 96.93 P
ATOM 23 OP1 A A 481 51.089 4.847 -39.594 1.00 96.99 O
ATOM 24 OP2 A A 481 49.381 2.957 -39.459 1.00 96.91 O
ATOM 25 O5' A A 481 51.480 2.696 -40.823 1.00 97.70 O
TER
ATOM 1 O3' U B 478 44.409 -1.277 -30.283 1.00 80.78 O
ATOM 2 P G B 479 43.687 -0.987 -31.685 1.00 93.81 P
ATOM 3 OP1 G B 479 43.228 0.427 -31.656 1.00 93.85 O
ATOM 4 OP2 G B 479 42.683 -2.060 -31.916 1.00 94.01 O
ATOM 5 O5' G B 479 44.873 -1.144 -32.701 1.00 94.35 O
ATOM 6 C5' G B 479 45.742 -2.248 -32.638 1.00 94.24 C
ATOM 7 C4' G B 479 46.639 -2.237 -33.818 1.00 94.92 C
ATOM 8 O4' G B 479 46.577 -3.533 -34.468 1.00 95.33 O
ATOM 9 C3' G B 479 46.245 -1.203 -34.866 1.00 95.61 C
ATOM 10 O3' G B 479 47.409 -0.693 -35.500 1.00 95.95 O
ATOM 11 C2' G B 479 45.436 -2.022 -35.861 1.00 96.28 C
ATOM 12 O2' G B 479 45.405 -1.487 -37.172 1.00 97.13 O
ATOM 13 C1' G B 479 46.149 -3.380 -35.801 1.00 96.20 C
ATOM 14 N9 G B 479 45.293 -4.523 -36.128 1.00 96.47 N
ATOM 15 C8 G B 479 44.210 -4.935 -35.401 1.00 96.08 C
ATOM 16 N7 G B 479 43.626 -5.980 -35.914 1.00 96.46 N
ATOM 17 C5 G B 479 44.372 -6.285 -37.042 1.00 97.14 C
ATOM 18 C6 G B 479 44.220 -7.321 -37.998 1.00 97.80 C
ATOM 19 O6 G B 479 43.371 -8.209 -38.053 1.00 97.92 O
ATOM 20 N1 G B 479 45.193 -7.282 -38.978 1.00 98.37 N
ATOM 21 C2 G B 479 46.186 -6.345 -39.047 1.00 98.33 C
ATOM 22 N2 G B 479 47.039 -6.474 -40.073 1.00 98.96 N
ATOM 23 N3 G B 479 46.341 -5.372 -38.164 1.00 97.73 N
ATOM 24 C4 G B 479 45.410 -5.400 -37.187 1.00 97.15 C
ATOM 25 P U B 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 26 OP1 U B 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 27 OP2 U B 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 28 O5' U B 480 49.347 0.804 -35.989 1.00 82.46 O
TER
Atoms:
C4: (50.054,-3.760,-39.630)
N3: (51.374,-3.513,-39.956)
OP1: (48.627,0.346,-33.582)
OP2: (47.143,1.761,-35.133)
C2: (52.175,-2.549,-39.416)
C1': (52.440,-0.736,-37.898)
C3': (51.427,1.399,-38.044)
O5': (49.347,0.804,-35.989)
O4': (51.944,-0.374,-36.620)
C5': (50.585,1.364,-35.592)
P: (48.121,0.645,-34.959)
C4': (51.688,1.052,-36.584)
C2': (52.421,0.510,-38.784)
O2': (53.716,1.085,-38.795)
N1: (51.589,-1.783,-38.450)
O4: (49.437,-4.671,-40.198)
O2: (53.334,-2.387,-39.739)
C6: (50.282,-1.944,-38.074)
C5: (49.521,-2.894,-38.620)
O3': (51.580,2.768,-38.337)
N3: (51.374,-3.513,-39.956)
OP1: (48.627,0.346,-33.582)
OP2: (47.143,1.761,-35.133)
C2: (52.175,-2.549,-39.416)
C1': (52.440,-0.736,-37.898)
C3': (51.427,1.399,-38.044)
O5': (49.347,0.804,-35.989)
O4': (51.944,-0.374,-36.620)
C5': (50.585,1.364,-35.592)
P: (48.121,0.645,-34.959)
C4': (51.688,1.052,-36.584)
C2': (52.421,0.510,-38.784)
O2': (53.716,1.085,-38.795)
N1: (51.589,-1.783,-38.450)
O4: (49.437,-4.671,-40.198)
O2: (53.334,-2.387,-39.739)
C6: (50.282,-1.944,-38.074)
C5: (49.521,-2.894,-38.620)
O3': (51.580,2.768,-38.337)
OP1: (43.228,0.427,-31.656)
OP2: (42.683,-2.060,-31.916)
C3': (46.245,-1.203,-34.866)
C1': (46.149,-3.380,-35.801)
C5': (45.742,-2.248,-32.638)
O6: (43.371,-8.209,-38.053)
O4': (46.577,-3.533,-34.468)
C8: (44.210,-4.935,-35.401)
C2: (46.186,-6.345,-39.047)
C6: (44.220,-7.321,-37.998)
C5: (44.372,-6.285,-37.042)
C4: (45.410,-5.400,-37.187)
P: (43.687,-0.987,-31.685)
C4': (46.639,-2.237,-33.818)
C2': (45.436,-2.022,-35.861)
O2': (45.405,-1.487,-37.172)
N1: (45.193,-7.282,-38.978)
N2: (47.039,-6.474,-40.073)
N3: (46.341,-5.372,-38.164)
N7: (43.626,-5.980,-35.914)
N9: (45.293,-4.523,-36.128)
O5': (44.873,-1.144,-32.701)
O3': (47.409,-0.693,-35.500)
OP2: (42.683,-2.060,-31.916)
C3': (46.245,-1.203,-34.866)
C1': (46.149,-3.380,-35.801)
C5': (45.742,-2.248,-32.638)
O6: (43.371,-8.209,-38.053)
O4': (46.577,-3.533,-34.468)
C8: (44.210,-4.935,-35.401)
C2: (46.186,-6.345,-39.047)
C6: (44.220,-7.321,-37.998)
C5: (44.372,-6.285,-37.042)
C4: (45.410,-5.400,-37.187)
P: (43.687,-0.987,-31.685)
C4': (46.639,-2.237,-33.818)
C2': (45.436,-2.022,-35.861)
O2': (45.405,-1.487,-37.172)
N1: (45.193,-7.282,-38.978)
N2: (47.039,-6.474,-40.073)
N3: (46.341,-5.372,-38.164)
N7: (43.626,-5.980,-35.914)
N9: (45.293,-4.523,-36.128)
O5': (44.873,-1.144,-32.701)
O3': (47.409,-0.693,-35.500)
Image (generated by PyMOL):