Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3K5Z:B6:B5
Extra
PDB:
ATOM 1 O3' C A 5 33.403 -1.168 -6.372 1.00 45.94 O
ATOM 2 P A A 6 32.825 -1.738 -7.747 1.00 42.16 P
ATOM 3 OP1 A A 6 32.995 -3.208 -7.731 1.00 53.63 O
ATOM 4 OP2 A A 6 33.384 -0.918 -8.842 1.00 51.21 O
ATOM 5 O5' A A 6 31.262 -1.429 -7.681 1.00 46.83 O
ATOM 6 C5' A A 6 30.391 -2.271 -6.952 1.00 43.13 C
ATOM 7 C4' A A 6 29.271 -1.450 -6.329 1.00 46.03 C
ATOM 8 O4' A A 6 29.833 -0.714 -5.197 1.00 48.55 O
ATOM 9 C3' A A 6 28.688 -0.345 -7.225 1.00 39.31 C
ATOM 10 O3' A A 6 27.659 -0.842 -8.064 1.00 40.02 O
ATOM 11 C2' A A 6 28.079 0.559 -6.142 1.00 41.09 C
ATOM 12 O2' A A 6 26.866 0.029 -5.637 1.00 43.28 O
ATOM 13 C1' A A 6 29.131 0.497 -5.033 1.00 43.03 C
ATOM 14 N9 A A 6 30.054 1.618 -5.130 1.00 43.59 N
ATOM 15 C8 A A 6 31.364 1.613 -5.460 1.00 41.79 C
ATOM 16 N7 A A 6 31.934 2.771 -5.451 1.00 39.97 N
ATOM 17 C5 A A 6 30.911 3.647 -5.079 1.00 40.48 C
ATOM 18 C6 A A 6 30.858 5.037 -4.883 1.00 39.59 C
ATOM 19 N6 A A 6 31.906 5.829 -5.038 1.00 35.02 N
ATOM 20 N1 A A 6 29.693 5.565 -4.520 1.00 38.51 N
ATOM 21 C2 A A 6 28.613 4.768 -4.358 1.00 35.59 C
ATOM 22 N3 A A 6 28.558 3.430 -4.526 1.00 36.71 N
ATOM 23 C4 A A 6 29.746 2.934 -4.886 1.00 39.61 C
ATOM 24 P U A 7 27.659 -0.536 -9.637 1.00 52.62 P
ATOM 25 OP1 U A 7 26.386 -1.068 -10.182 1.00 54.36 O
ATOM 26 OP2 U A 7 28.944 -0.973 -10.215 1.00 51.73 O
ATOM 27 O5' U A 7 27.629 1.057 -9.700 1.00 51.91 O
TER
ATOM 1 O3' C B 4 31.928 -3.779 -1.039 1.00 38.63 O
ATOM 2 P C B 5 31.345 -3.805 -2.526 1.00 38.81 P
ATOM 3 OP1 C B 5 30.144 -2.932 -2.524 1.00 49.52 O
ATOM 4 OP2 C B 5 31.221 -5.228 -2.970 1.00 36.09 O
ATOM 5 O5' C B 5 32.444 -3.142 -3.453 1.00 31.47 O
ATOM 6 C5' C B 5 32.819 -1.761 -3.294 1.00 32.50 C
ATOM 7 C4' C B 5 34.086 -1.447 -4.079 1.00 36.61 C
ATOM 8 O4' C B 5 35.238 -2.055 -3.435 1.00 46.67 O
ATOM 9 C3' C B 5 34.126 -2.011 -5.494 1.00 45.56 C
ATOM 10 O3' C B 5 33.403 -1.168 -6.372 1.00 45.94 O
ATOM 11 C2' C B 5 35.628 -1.993 -5.765 1.00 57.36 C
ATOM 12 O2' C B 5 36.122 -0.698 -6.053 1.00 62.15 O
ATOM 13 C1' C B 5 36.170 -2.473 -4.416 1.00 54.32 C
ATOM 14 N1 C B 5 36.318 -3.949 -4.363 1.00 62.12 N
ATOM 15 C2 C B 5 37.458 -4.557 -4.913 1.00 74.74 C
ATOM 16 O2 C B 5 38.330 -3.848 -5.420 1.00 82.79 O
ATOM 17 N3 C B 5 37.566 -5.908 -4.865 1.00 73.12 N
ATOM 18 C4 C B 5 36.606 -6.642 -4.307 1.00 70.54 C
ATOM 19 N4 C B 5 36.753 -7.973 -4.279 1.00 69.58 N
ATOM 20 C5 C B 5 35.437 -6.034 -3.742 1.00 62.59 C
ATOM 21 C6 C B 5 35.340 -4.703 -3.792 1.00 58.82 C
ATOM 22 P A B 6 32.825 -1.738 -7.747 1.00 42.16 P
ATOM 23 OP1 A B 6 32.995 -3.208 -7.731 1.00 53.63 O
ATOM 24 OP2 A B 6 33.384 -0.918 -8.842 1.00 51.21 O
ATOM 25 O5' A B 6 31.262 -1.429 -7.681 1.00 46.83 O
TER
ATOM 2 P A A 6 32.825 -1.738 -7.747 1.00 42.16 P
ATOM 3 OP1 A A 6 32.995 -3.208 -7.731 1.00 53.63 O
ATOM 4 OP2 A A 6 33.384 -0.918 -8.842 1.00 51.21 O
ATOM 5 O5' A A 6 31.262 -1.429 -7.681 1.00 46.83 O
ATOM 6 C5' A A 6 30.391 -2.271 -6.952 1.00 43.13 C
ATOM 7 C4' A A 6 29.271 -1.450 -6.329 1.00 46.03 C
ATOM 8 O4' A A 6 29.833 -0.714 -5.197 1.00 48.55 O
ATOM 9 C3' A A 6 28.688 -0.345 -7.225 1.00 39.31 C
ATOM 10 O3' A A 6 27.659 -0.842 -8.064 1.00 40.02 O
ATOM 11 C2' A A 6 28.079 0.559 -6.142 1.00 41.09 C
ATOM 12 O2' A A 6 26.866 0.029 -5.637 1.00 43.28 O
ATOM 13 C1' A A 6 29.131 0.497 -5.033 1.00 43.03 C
ATOM 14 N9 A A 6 30.054 1.618 -5.130 1.00 43.59 N
ATOM 15 C8 A A 6 31.364 1.613 -5.460 1.00 41.79 C
ATOM 16 N7 A A 6 31.934 2.771 -5.451 1.00 39.97 N
ATOM 17 C5 A A 6 30.911 3.647 -5.079 1.00 40.48 C
ATOM 18 C6 A A 6 30.858 5.037 -4.883 1.00 39.59 C
ATOM 19 N6 A A 6 31.906 5.829 -5.038 1.00 35.02 N
ATOM 20 N1 A A 6 29.693 5.565 -4.520 1.00 38.51 N
ATOM 21 C2 A A 6 28.613 4.768 -4.358 1.00 35.59 C
ATOM 22 N3 A A 6 28.558 3.430 -4.526 1.00 36.71 N
ATOM 23 C4 A A 6 29.746 2.934 -4.886 1.00 39.61 C
ATOM 24 P U A 7 27.659 -0.536 -9.637 1.00 52.62 P
ATOM 25 OP1 U A 7 26.386 -1.068 -10.182 1.00 54.36 O
ATOM 26 OP2 U A 7 28.944 -0.973 -10.215 1.00 51.73 O
ATOM 27 O5' U A 7 27.629 1.057 -9.700 1.00 51.91 O
TER
ATOM 1 O3' C B 4 31.928 -3.779 -1.039 1.00 38.63 O
ATOM 2 P C B 5 31.345 -3.805 -2.526 1.00 38.81 P
ATOM 3 OP1 C B 5 30.144 -2.932 -2.524 1.00 49.52 O
ATOM 4 OP2 C B 5 31.221 -5.228 -2.970 1.00 36.09 O
ATOM 5 O5' C B 5 32.444 -3.142 -3.453 1.00 31.47 O
ATOM 6 C5' C B 5 32.819 -1.761 -3.294 1.00 32.50 C
ATOM 7 C4' C B 5 34.086 -1.447 -4.079 1.00 36.61 C
ATOM 8 O4' C B 5 35.238 -2.055 -3.435 1.00 46.67 O
ATOM 9 C3' C B 5 34.126 -2.011 -5.494 1.00 45.56 C
ATOM 10 O3' C B 5 33.403 -1.168 -6.372 1.00 45.94 O
ATOM 11 C2' C B 5 35.628 -1.993 -5.765 1.00 57.36 C
ATOM 12 O2' C B 5 36.122 -0.698 -6.053 1.00 62.15 O
ATOM 13 C1' C B 5 36.170 -2.473 -4.416 1.00 54.32 C
ATOM 14 N1 C B 5 36.318 -3.949 -4.363 1.00 62.12 N
ATOM 15 C2 C B 5 37.458 -4.557 -4.913 1.00 74.74 C
ATOM 16 O2 C B 5 38.330 -3.848 -5.420 1.00 82.79 O
ATOM 17 N3 C B 5 37.566 -5.908 -4.865 1.00 73.12 N
ATOM 18 C4 C B 5 36.606 -6.642 -4.307 1.00 70.54 C
ATOM 19 N4 C B 5 36.753 -7.973 -4.279 1.00 69.58 N
ATOM 20 C5 C B 5 35.437 -6.034 -3.742 1.00 62.59 C
ATOM 21 C6 C B 5 35.340 -4.703 -3.792 1.00 58.82 C
ATOM 22 P A B 6 32.825 -1.738 -7.747 1.00 42.16 P
ATOM 23 OP1 A B 6 32.995 -3.208 -7.731 1.00 53.63 O
ATOM 24 OP2 A B 6 33.384 -0.918 -8.842 1.00 51.21 O
ATOM 25 O5' A B 6 31.262 -1.429 -7.681 1.00 46.83 O
TER
Atoms:
OP1: (32.995,-3.208,-7.731)
OP2: (33.384,-0.918,-8.842)
C3': (28.688,-0.345,-7.225)
C1': (29.131,0.497,-5.033)
C5': (30.391,-2.271,-6.952)
O4': (29.833,-0.714,-5.197)
C8: (31.364,1.613,-5.460)
O2': (26.866,0.029,-5.637)
C6: (30.858,5.037,-4.883)
C5: (30.911,3.647,-5.079)
C4: (29.746,2.934,-4.886)
P: (32.825,-1.738,-7.747)
C4': (29.271,-1.450,-6.329)
C2': (28.079,0.559,-6.142)
C2: (28.613,4.768,-4.358)
N1: (29.693,5.565,-4.520)
N3: (28.558,3.430,-4.526)
N6: (31.906,5.829,-5.038)
N7: (31.934,2.771,-5.451)
N9: (30.054,1.618,-5.130)
O5': (31.262,-1.429,-7.681)
O3': (27.659,-0.842,-8.064)
OP2: (33.384,-0.918,-8.842)
C3': (28.688,-0.345,-7.225)
C1': (29.131,0.497,-5.033)
C5': (30.391,-2.271,-6.952)
O4': (29.833,-0.714,-5.197)
C8: (31.364,1.613,-5.460)
O2': (26.866,0.029,-5.637)
C6: (30.858,5.037,-4.883)
C5: (30.911,3.647,-5.079)
C4: (29.746,2.934,-4.886)
P: (32.825,-1.738,-7.747)
C4': (29.271,-1.450,-6.329)
C2': (28.079,0.559,-6.142)
C2: (28.613,4.768,-4.358)
N1: (29.693,5.565,-4.520)
N3: (28.558,3.430,-4.526)
N6: (31.906,5.829,-5.038)
N7: (31.934,2.771,-5.451)
N9: (30.054,1.618,-5.130)
O5': (31.262,-1.429,-7.681)
O3': (27.659,-0.842,-8.064)
C2: (37.458,-4.557,-4.913)
OP1: (30.144,-2.932,-2.524)
OP2: (31.221,-5.228,-2.970)
C4: (36.606,-6.642,-4.307)
O5': (32.444,-3.142,-3.453)
C3': (34.126,-2.011,-5.494)
C1': (36.170,-2.473,-4.416)
O4': (35.238,-2.055,-3.435)
C5': (32.819,-1.761,-3.294)
P: (31.345,-3.805,-2.526)
O2: (38.330,-3.848,-5.420)
C4': (34.086,-1.447,-4.079)
C2': (35.628,-1.993,-5.765)
O2': (36.122,-0.698,-6.053)
N1: (36.318,-3.949,-4.363)
N3: (37.566,-5.908,-4.865)
N4: (36.753,-7.973,-4.279)
C6: (35.340,-4.703,-3.792)
C5: (35.437,-6.034,-3.742)
O3': (33.403,-1.168,-6.372)
OP1: (30.144,-2.932,-2.524)
OP2: (31.221,-5.228,-2.970)
C4: (36.606,-6.642,-4.307)
O5': (32.444,-3.142,-3.453)
C3': (34.126,-2.011,-5.494)
C1': (36.170,-2.473,-4.416)
O4': (35.238,-2.055,-3.435)
C5': (32.819,-1.761,-3.294)
P: (31.345,-3.805,-2.526)
O2: (38.330,-3.848,-5.420)
C4': (34.086,-1.447,-4.079)
C2': (35.628,-1.993,-5.765)
O2': (36.122,-0.698,-6.053)
N1: (36.318,-3.949,-4.363)
N3: (37.566,-5.908,-4.865)
N4: (36.753,-7.973,-4.279)
C6: (35.340,-4.703,-3.792)
C5: (35.437,-6.034,-3.742)
O3': (33.403,-1.168,-6.372)
Image (generated by PyMOL):