Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3ND4:A13:A12
Extra
PDB:
ATOM 1 O3' C A 12 0.551 20.698 -17.201 1.00 12.07 O
ATOM 2 P U A 13 1.264 20.248 -18.568 1.00 13.25 P
ATOM 3 OP1 U A 13 0.484 20.864 -19.673 1.00 15.25 O
ATOM 4 OP2 U A 13 1.437 18.812 -18.531 1.00 15.15 O
ATOM 5 O5' U A 13 2.706 20.930 -18.501 1.00 12.00 O
ATOM 6 C5' U A 13 2.812 22.327 -18.649 1.00 15.22 C
ATOM 7 C4' U A 13 4.176 22.815 -18.265 1.00 12.02 C
ATOM 8 O4' U A 13 4.518 22.394 -16.932 1.00 11.66 O
ATOM 9 C3' U A 13 5.346 22.328 -19.108 1.00 10.77 C
ATOM 10 O3' U A 13 5.443 23.033 -20.322 1.00 11.62 O
ATOM 11 C2' U A 13 6.492 22.627 -18.168 1.00 11.06 C
ATOM 12 O2' U A 13 6.669 24.046 -18.066 1.00 9.01 O
ATOM 13 C1' U A 13 5.906 22.155 -16.863 1.00 11.66 C
ATOM 14 N1 U A 13 6.129 20.704 -16.575 1.00 8.04 N
ATOM 15 C2 U A 13 7.364 20.352 -16.053 1.00 9.79 C
ATOM 16 O2 U A 13 8.269 21.149 -15.892 1.00 10.55 O
ATOM 17 N3 U A 13 7.470 19.022 -15.711 1.00 10.59 N
ATOM 18 C4 U A 13 6.533 18.031 -15.815 1.00 9.62 C
ATOM 19 O4 U A 13 6.770 16.846 -15.491 1.00 11.41 O
ATOM 20 C5 U A 13 5.297 18.455 -16.387 1.00 10.71 C
ATOM 21 C6 U A 13 5.141 19.745 -16.736 1.00 8.67 C
ATOM 22 P C A 14 6.182 22.452 -21.616 1.00 11.31 P
ATOM 23 OP1 C A 14 5.858 23.389 -22.730 1.00 14.12 O
ATOM 24 OP2 C A 14 5.839 21.011 -21.771 1.00 12.44 O
ATOM 25 O5' C A 14 7.722 22.556 -21.273 1.00 11.46 O
TER
ATOM 1 O3' U B 11 -2.025 16.353 -13.619 1.00 16.26 O
ATOM 2 P C B 12 -1.389 16.356 -15.100 1.00 14.88 P
ATOM 3 OP1 C B 12 -2.548 16.416 -16.053 1.00 17.06 O
ATOM 4 OP2 C B 12 -0.456 15.237 -15.209 1.00 16.05 O
ATOM 5 O5' C B 12 -0.569 17.702 -15.168 1.00 14.90 O
ATOM 6 C5' C B 12 -1.207 18.950 -15.139 1.00 15.93 C
ATOM 7 C4' C B 12 -0.208 20.062 -14.953 1.00 16.29 C
ATOM 8 O4' C B 12 0.476 19.897 -13.681 1.00 14.35 O
ATOM 9 C3' C B 12 0.934 20.127 -15.959 1.00 12.46 C
ATOM 10 O3' C B 12 0.551 20.698 -17.201 1.00 12.07 O
ATOM 11 C2' C B 12 1.953 20.970 -15.194 1.00 9.75 C
ATOM 12 O2' C B 12 1.559 22.327 -15.172 1.00 13.62 O
ATOM 13 C1' C B 12 1.797 20.410 -13.792 1.00 11.38 C
ATOM 14 N1 C B 12 2.764 19.338 -13.516 1.00 10.98 N
ATOM 15 C2 C B 12 4.049 19.755 -13.112 1.00 11.12 C
ATOM 16 O2 C B 12 4.289 20.979 -13.108 1.00 14.10 O
ATOM 17 N3 C B 12 4.972 18.822 -12.817 1.00 11.30 N
ATOM 18 C4 C B 12 4.661 17.539 -12.848 1.00 12.15 C
ATOM 19 N4 C B 12 5.614 16.693 -12.521 1.00 14.13 N
ATOM 20 C5 C B 12 3.355 17.082 -13.240 1.00 15.39 C
ATOM 21 C6 C B 12 2.443 18.013 -13.542 1.00 13.73 C
ATOM 22 P U B 13 1.264 20.248 -18.568 1.00 13.25 P
ATOM 23 OP1 U B 13 0.484 20.864 -19.673 1.00 15.25 O
ATOM 24 OP2 U B 13 1.437 18.812 -18.531 1.00 15.15 O
ATOM 25 O5' U B 13 2.706 20.930 -18.501 1.00 12.00 O
TER
ATOM 2 P U A 13 1.264 20.248 -18.568 1.00 13.25 P
ATOM 3 OP1 U A 13 0.484 20.864 -19.673 1.00 15.25 O
ATOM 4 OP2 U A 13 1.437 18.812 -18.531 1.00 15.15 O
ATOM 5 O5' U A 13 2.706 20.930 -18.501 1.00 12.00 O
ATOM 6 C5' U A 13 2.812 22.327 -18.649 1.00 15.22 C
ATOM 7 C4' U A 13 4.176 22.815 -18.265 1.00 12.02 C
ATOM 8 O4' U A 13 4.518 22.394 -16.932 1.00 11.66 O
ATOM 9 C3' U A 13 5.346 22.328 -19.108 1.00 10.77 C
ATOM 10 O3' U A 13 5.443 23.033 -20.322 1.00 11.62 O
ATOM 11 C2' U A 13 6.492 22.627 -18.168 1.00 11.06 C
ATOM 12 O2' U A 13 6.669 24.046 -18.066 1.00 9.01 O
ATOM 13 C1' U A 13 5.906 22.155 -16.863 1.00 11.66 C
ATOM 14 N1 U A 13 6.129 20.704 -16.575 1.00 8.04 N
ATOM 15 C2 U A 13 7.364 20.352 -16.053 1.00 9.79 C
ATOM 16 O2 U A 13 8.269 21.149 -15.892 1.00 10.55 O
ATOM 17 N3 U A 13 7.470 19.022 -15.711 1.00 10.59 N
ATOM 18 C4 U A 13 6.533 18.031 -15.815 1.00 9.62 C
ATOM 19 O4 U A 13 6.770 16.846 -15.491 1.00 11.41 O
ATOM 20 C5 U A 13 5.297 18.455 -16.387 1.00 10.71 C
ATOM 21 C6 U A 13 5.141 19.745 -16.736 1.00 8.67 C
ATOM 22 P C A 14 6.182 22.452 -21.616 1.00 11.31 P
ATOM 23 OP1 C A 14 5.858 23.389 -22.730 1.00 14.12 O
ATOM 24 OP2 C A 14 5.839 21.011 -21.771 1.00 12.44 O
ATOM 25 O5' C A 14 7.722 22.556 -21.273 1.00 11.46 O
TER
ATOM 1 O3' U B 11 -2.025 16.353 -13.619 1.00 16.26 O
ATOM 2 P C B 12 -1.389 16.356 -15.100 1.00 14.88 P
ATOM 3 OP1 C B 12 -2.548 16.416 -16.053 1.00 17.06 O
ATOM 4 OP2 C B 12 -0.456 15.237 -15.209 1.00 16.05 O
ATOM 5 O5' C B 12 -0.569 17.702 -15.168 1.00 14.90 O
ATOM 6 C5' C B 12 -1.207 18.950 -15.139 1.00 15.93 C
ATOM 7 C4' C B 12 -0.208 20.062 -14.953 1.00 16.29 C
ATOM 8 O4' C B 12 0.476 19.897 -13.681 1.00 14.35 O
ATOM 9 C3' C B 12 0.934 20.127 -15.959 1.00 12.46 C
ATOM 10 O3' C B 12 0.551 20.698 -17.201 1.00 12.07 O
ATOM 11 C2' C B 12 1.953 20.970 -15.194 1.00 9.75 C
ATOM 12 O2' C B 12 1.559 22.327 -15.172 1.00 13.62 O
ATOM 13 C1' C B 12 1.797 20.410 -13.792 1.00 11.38 C
ATOM 14 N1 C B 12 2.764 19.338 -13.516 1.00 10.98 N
ATOM 15 C2 C B 12 4.049 19.755 -13.112 1.00 11.12 C
ATOM 16 O2 C B 12 4.289 20.979 -13.108 1.00 14.10 O
ATOM 17 N3 C B 12 4.972 18.822 -12.817 1.00 11.30 N
ATOM 18 C4 C B 12 4.661 17.539 -12.848 1.00 12.15 C
ATOM 19 N4 C B 12 5.614 16.693 -12.521 1.00 14.13 N
ATOM 20 C5 C B 12 3.355 17.082 -13.240 1.00 15.39 C
ATOM 21 C6 C B 12 2.443 18.013 -13.542 1.00 13.73 C
ATOM 22 P U B 13 1.264 20.248 -18.568 1.00 13.25 P
ATOM 23 OP1 U B 13 0.484 20.864 -19.673 1.00 15.25 O
ATOM 24 OP2 U B 13 1.437 18.812 -18.531 1.00 15.15 O
ATOM 25 O5' U B 13 2.706 20.930 -18.501 1.00 12.00 O
TER
Atoms:
C4: (6.533,18.031,-15.815)
N3: (7.470,19.022,-15.711)
OP1: (0.484,20.864,-19.673)
OP2: (1.437,18.812,-18.531)
C2: (7.364,20.352,-16.053)
C1': (5.906,22.155,-16.863)
C3': (5.346,22.328,-19.108)
O5': (2.706,20.930,-18.501)
O4': (4.518,22.394,-16.932)
C5': (2.812,22.327,-18.649)
P: (1.264,20.248,-18.568)
C4': (4.176,22.815,-18.265)
C2': (6.492,22.627,-18.168)
O2': (6.669,24.046,-18.066)
N1: (6.129,20.704,-16.575)
O4: (6.770,16.846,-15.491)
O2: (8.269,21.149,-15.892)
C6: (5.141,19.745,-16.736)
C5: (5.297,18.455,-16.387)
O3': (5.443,23.033,-20.322)
N3: (7.470,19.022,-15.711)
OP1: (0.484,20.864,-19.673)
OP2: (1.437,18.812,-18.531)
C2: (7.364,20.352,-16.053)
C1': (5.906,22.155,-16.863)
C3': (5.346,22.328,-19.108)
O5': (2.706,20.930,-18.501)
O4': (4.518,22.394,-16.932)
C5': (2.812,22.327,-18.649)
P: (1.264,20.248,-18.568)
C4': (4.176,22.815,-18.265)
C2': (6.492,22.627,-18.168)
O2': (6.669,24.046,-18.066)
N1: (6.129,20.704,-16.575)
O4: (6.770,16.846,-15.491)
O2: (8.269,21.149,-15.892)
C6: (5.141,19.745,-16.736)
C5: (5.297,18.455,-16.387)
O3': (5.443,23.033,-20.322)
C2: (4.049,19.755,-13.112)
OP1: (-2.548,16.416,-16.053)
OP2: (-0.456,15.237,-15.209)
C4: (4.661,17.539,-12.848)
O5': (-0.569,17.702,-15.168)
C3': (0.934,20.127,-15.959)
C1': (1.797,20.410,-13.792)
O4': (0.476,19.897,-13.681)
C5': (-1.207,18.950,-15.139)
P: (-1.389,16.356,-15.100)
O2: (4.289,20.979,-13.108)
C4': (-0.208,20.062,-14.953)
C2': (1.953,20.970,-15.194)
O2': (1.559,22.327,-15.172)
N1: (2.764,19.338,-13.516)
N3: (4.972,18.822,-12.817)
N4: (5.614,16.693,-12.521)
C6: (2.443,18.013,-13.542)
C5: (3.355,17.082,-13.240)
O3': (0.551,20.698,-17.201)
OP1: (-2.548,16.416,-16.053)
OP2: (-0.456,15.237,-15.209)
C4: (4.661,17.539,-12.848)
O5': (-0.569,17.702,-15.168)
C3': (0.934,20.127,-15.959)
C1': (1.797,20.410,-13.792)
O4': (0.476,19.897,-13.681)
C5': (-1.207,18.950,-15.139)
P: (-1.389,16.356,-15.100)
O2: (4.289,20.979,-13.108)
C4': (-0.208,20.062,-14.953)
C2': (1.953,20.970,-15.194)
O2': (1.559,22.327,-15.172)
N1: (2.764,19.338,-13.516)
N3: (4.972,18.822,-12.817)
N4: (5.614,16.693,-12.521)
C6: (2.443,18.013,-13.542)
C5: (3.355,17.082,-13.240)
O3': (0.551,20.698,-17.201)
Image (generated by PyMOL):