Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YZD:B13:B12
Extra
PDB:
ATOM 1 O3' C A 12 -9.347 24.280 39.449 1.00 35.37 O
ATOM 2 P U A 13 -8.755 24.936 38.101 1.00 33.91 P
ATOM 3 OP1 U A 13 -9.873 24.858 37.132 1.00 35.21 O
ATOM 4 OP2 U A 13 -7.447 24.335 37.751 1.00 35.43 O
ATOM 5 O5' U A 13 -8.489 26.457 38.494 1.00 32.78 O
ATOM 6 C5' U A 13 -9.561 27.319 38.864 1.00 32.74 C
ATOM 7 C4' U A 13 -9.025 28.612 39.436 1.00 33.72 C
ATOM 8 O4' U A 13 -8.286 28.330 40.655 1.00 34.02 O
ATOM 9 C3' U A 13 -8.007 29.356 38.588 1.00 34.45 C
ATOM 10 O3' U A 13 -8.610 30.105 37.536 1.00 36.30 O
ATOM 11 C2' U A 13 -7.333 30.237 39.633 1.00 33.85 C
ATOM 12 O2' U A 13 -8.118 31.328 40.062 1.00 32.07 O
ATOM 13 C1' U A 13 -7.225 29.265 40.803 1.00 33.55 C
ATOM 14 N1 U A 13 -5.945 28.542 40.817 1.00 32.13 N
ATOM 15 C2 U A 13 -4.829 29.215 41.295 1.00 31.82 C
ATOM 16 O2 U A 13 -4.861 30.375 41.668 1.00 33.24 O
ATOM 17 N3 U A 13 -3.672 28.479 41.317 1.00 30.67 N
ATOM 18 C4 U A 13 -3.518 27.172 40.916 1.00 31.96 C
ATOM 19 O4 U A 13 -2.423 26.623 41.049 1.00 33.51 O
ATOM 20 C5 U A 13 -4.708 26.557 40.413 1.00 31.06 C
ATOM 21 C6 U A 13 -5.852 27.247 40.381 1.00 31.72 C
ATOM 22 P G A 14 -7.720 30.564 36.270 1.00 38.07 P
ATOM 23 OP1 G A 14 -8.637 31.239 35.312 1.00 36.27 O
ATOM 24 OP2 G A 14 -6.901 29.416 35.815 1.00 37.57 O
ATOM 25 O5' G A 14 -6.740 31.668 36.870 1.00 36.70 O
TER
ATOM 1 O3' U B 11 -6.475 19.310 41.588 1.00 29.98 O
ATOM 2 P C B 12 -6.182 20.198 40.289 1.00 27.57 P
ATOM 3 OP1 C B 12 -6.777 19.501 39.127 1.00 28.73 O
ATOM 4 OP2 C B 12 -4.737 20.527 40.286 1.00 28.53 O
ATOM 5 O5' C B 12 -7.001 21.537 40.572 1.00 31.20 O
ATOM 6 C5' C B 12 -8.408 21.495 40.780 1.00 31.03 C
ATOM 7 C4' C B 12 -8.898 22.807 41.336 1.00 32.45 C
ATOM 8 O4' C B 12 -8.339 23.009 42.657 1.00 31.29 O
ATOM 9 C3' C B 12 -8.492 24.055 40.568 1.00 33.89 C
ATOM 10 O3' C B 12 -9.347 24.280 39.449 1.00 35.37 O
ATOM 11 C2' C B 12 -8.634 25.132 41.636 1.00 31.94 C
ATOM 12 O2' C B 12 -9.966 25.512 41.878 1.00 32.78 O
ATOM 13 C1' C B 12 -8.114 24.392 42.867 1.00 32.57 C
ATOM 14 N1 C B 12 -6.676 24.602 43.063 1.00 33.17 N
ATOM 15 C2 C B 12 -6.248 25.809 43.610 1.00 32.45 C
ATOM 16 O2 C B 12 -7.092 26.675 43.882 1.00 31.08 O
ATOM 17 N3 C B 12 -4.930 26.005 43.829 1.00 32.41 N
ATOM 18 C4 C B 12 -4.057 25.051 43.519 1.00 31.98 C
ATOM 19 N4 C B 12 -2.772 25.276 43.779 1.00 32.71 N
ATOM 20 C5 C B 12 -4.464 23.818 42.936 1.00 32.71 C
ATOM 21 C6 C B 12 -5.771 23.637 42.726 1.00 31.87 C
ATOM 22 P U B 13 -8.755 24.936 38.101 1.00 33.91 P
ATOM 23 OP1 U B 13 -9.873 24.858 37.132 1.00 35.21 O
ATOM 24 OP2 U B 13 -7.447 24.335 37.751 1.00 35.43 O
ATOM 25 O5' U B 13 -8.489 26.457 38.494 1.00 32.78 O
TER
ATOM 2 P U A 13 -8.755 24.936 38.101 1.00 33.91 P
ATOM 3 OP1 U A 13 -9.873 24.858 37.132 1.00 35.21 O
ATOM 4 OP2 U A 13 -7.447 24.335 37.751 1.00 35.43 O
ATOM 5 O5' U A 13 -8.489 26.457 38.494 1.00 32.78 O
ATOM 6 C5' U A 13 -9.561 27.319 38.864 1.00 32.74 C
ATOM 7 C4' U A 13 -9.025 28.612 39.436 1.00 33.72 C
ATOM 8 O4' U A 13 -8.286 28.330 40.655 1.00 34.02 O
ATOM 9 C3' U A 13 -8.007 29.356 38.588 1.00 34.45 C
ATOM 10 O3' U A 13 -8.610 30.105 37.536 1.00 36.30 O
ATOM 11 C2' U A 13 -7.333 30.237 39.633 1.00 33.85 C
ATOM 12 O2' U A 13 -8.118 31.328 40.062 1.00 32.07 O
ATOM 13 C1' U A 13 -7.225 29.265 40.803 1.00 33.55 C
ATOM 14 N1 U A 13 -5.945 28.542 40.817 1.00 32.13 N
ATOM 15 C2 U A 13 -4.829 29.215 41.295 1.00 31.82 C
ATOM 16 O2 U A 13 -4.861 30.375 41.668 1.00 33.24 O
ATOM 17 N3 U A 13 -3.672 28.479 41.317 1.00 30.67 N
ATOM 18 C4 U A 13 -3.518 27.172 40.916 1.00 31.96 C
ATOM 19 O4 U A 13 -2.423 26.623 41.049 1.00 33.51 O
ATOM 20 C5 U A 13 -4.708 26.557 40.413 1.00 31.06 C
ATOM 21 C6 U A 13 -5.852 27.247 40.381 1.00 31.72 C
ATOM 22 P G A 14 -7.720 30.564 36.270 1.00 38.07 P
ATOM 23 OP1 G A 14 -8.637 31.239 35.312 1.00 36.27 O
ATOM 24 OP2 G A 14 -6.901 29.416 35.815 1.00 37.57 O
ATOM 25 O5' G A 14 -6.740 31.668 36.870 1.00 36.70 O
TER
ATOM 1 O3' U B 11 -6.475 19.310 41.588 1.00 29.98 O
ATOM 2 P C B 12 -6.182 20.198 40.289 1.00 27.57 P
ATOM 3 OP1 C B 12 -6.777 19.501 39.127 1.00 28.73 O
ATOM 4 OP2 C B 12 -4.737 20.527 40.286 1.00 28.53 O
ATOM 5 O5' C B 12 -7.001 21.537 40.572 1.00 31.20 O
ATOM 6 C5' C B 12 -8.408 21.495 40.780 1.00 31.03 C
ATOM 7 C4' C B 12 -8.898 22.807 41.336 1.00 32.45 C
ATOM 8 O4' C B 12 -8.339 23.009 42.657 1.00 31.29 O
ATOM 9 C3' C B 12 -8.492 24.055 40.568 1.00 33.89 C
ATOM 10 O3' C B 12 -9.347 24.280 39.449 1.00 35.37 O
ATOM 11 C2' C B 12 -8.634 25.132 41.636 1.00 31.94 C
ATOM 12 O2' C B 12 -9.966 25.512 41.878 1.00 32.78 O
ATOM 13 C1' C B 12 -8.114 24.392 42.867 1.00 32.57 C
ATOM 14 N1 C B 12 -6.676 24.602 43.063 1.00 33.17 N
ATOM 15 C2 C B 12 -6.248 25.809 43.610 1.00 32.45 C
ATOM 16 O2 C B 12 -7.092 26.675 43.882 1.00 31.08 O
ATOM 17 N3 C B 12 -4.930 26.005 43.829 1.00 32.41 N
ATOM 18 C4 C B 12 -4.057 25.051 43.519 1.00 31.98 C
ATOM 19 N4 C B 12 -2.772 25.276 43.779 1.00 32.71 N
ATOM 20 C5 C B 12 -4.464 23.818 42.936 1.00 32.71 C
ATOM 21 C6 C B 12 -5.771 23.637 42.726 1.00 31.87 C
ATOM 22 P U B 13 -8.755 24.936 38.101 1.00 33.91 P
ATOM 23 OP1 U B 13 -9.873 24.858 37.132 1.00 35.21 O
ATOM 24 OP2 U B 13 -7.447 24.335 37.751 1.00 35.43 O
ATOM 25 O5' U B 13 -8.489 26.457 38.494 1.00 32.78 O
TER
Atoms:
C4: (-3.518,27.172,40.916)
N3: (-3.672,28.479,41.317)
OP1: (-9.873,24.858,37.132)
OP2: (-7.447,24.335,37.751)
C2: (-4.829,29.215,41.295)
C1': (-7.225,29.265,40.803)
C3': (-8.007,29.356,38.588)
O5': (-8.489,26.457,38.494)
O4': (-8.286,28.330,40.655)
C5': (-9.561,27.319,38.864)
P: (-8.755,24.936,38.101)
C4': (-9.025,28.612,39.436)
C2': (-7.333,30.237,39.633)
O2': (-8.118,31.328,40.062)
N1: (-5.945,28.542,40.817)
O4: (-2.423,26.623,41.049)
O2: (-4.861,30.375,41.668)
C6: (-5.852,27.247,40.381)
C5: (-4.708,26.557,40.413)
O3': (-8.610,30.105,37.536)
N3: (-3.672,28.479,41.317)
OP1: (-9.873,24.858,37.132)
OP2: (-7.447,24.335,37.751)
C2: (-4.829,29.215,41.295)
C1': (-7.225,29.265,40.803)
C3': (-8.007,29.356,38.588)
O5': (-8.489,26.457,38.494)
O4': (-8.286,28.330,40.655)
C5': (-9.561,27.319,38.864)
P: (-8.755,24.936,38.101)
C4': (-9.025,28.612,39.436)
C2': (-7.333,30.237,39.633)
O2': (-8.118,31.328,40.062)
N1: (-5.945,28.542,40.817)
O4: (-2.423,26.623,41.049)
O2: (-4.861,30.375,41.668)
C6: (-5.852,27.247,40.381)
C5: (-4.708,26.557,40.413)
O3': (-8.610,30.105,37.536)
C2: (-6.248,25.809,43.610)
OP1: (-6.777,19.501,39.127)
OP2: (-4.737,20.527,40.286)
C4: (-4.057,25.051,43.519)
O5': (-7.001,21.537,40.572)
C3': (-8.492,24.055,40.568)
C1': (-8.114,24.392,42.867)
O4': (-8.339,23.009,42.657)
C5': (-8.408,21.495,40.780)
P: (-6.182,20.198,40.289)
O2: (-7.092,26.675,43.882)
C4': (-8.898,22.807,41.336)
C2': (-8.634,25.132,41.636)
O2': (-9.966,25.512,41.878)
N1: (-6.676,24.602,43.063)
N3: (-4.930,26.005,43.829)
N4: (-2.772,25.276,43.779)
C6: (-5.771,23.637,42.726)
C5: (-4.464,23.818,42.936)
O3': (-9.347,24.280,39.449)
OP1: (-6.777,19.501,39.127)
OP2: (-4.737,20.527,40.286)
C4: (-4.057,25.051,43.519)
O5': (-7.001,21.537,40.572)
C3': (-8.492,24.055,40.568)
C1': (-8.114,24.392,42.867)
O4': (-8.339,23.009,42.657)
C5': (-8.408,21.495,40.780)
P: (-6.182,20.198,40.289)
O2: (-7.092,26.675,43.882)
C4': (-8.898,22.807,41.336)
C2': (-8.634,25.132,41.636)
O2': (-9.966,25.512,41.878)
N1: (-6.676,24.602,43.063)
N3: (-4.930,26.005,43.829)
N4: (-2.772,25.276,43.779)
C6: (-5.771,23.637,42.726)
C5: (-4.464,23.818,42.936)
O3': (-9.347,24.280,39.449)
Image (generated by PyMOL):