Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD4:B4:B3
Extra
PDB:
ATOM 1 O3' C A 3 7.777 16.850 75.767 1.00 37.55 O
ATOM 2 P A A 4 6.841 15.601 75.372 1.00 38.08 P
ATOM 3 OP1 A A 4 6.787 15.563 73.884 1.00 38.53 O
ATOM 4 OP2 A A 4 5.579 15.691 76.146 1.00 38.81 O
ATOM 5 O5' A A 4 7.668 14.346 75.906 1.00 36.49 O
ATOM 6 C5' A A 4 7.916 13.203 75.088 1.00 31.28 C
ATOM 7 C4' A A 4 9.280 13.309 74.441 1.00 29.12 C
ATOM 8 O4' A A 4 10.245 13.845 75.388 1.00 27.81 O
ATOM 9 C3' A A 4 9.887 11.991 73.983 1.00 27.97 C
ATOM 10 O3' A A 4 9.427 11.626 72.689 1.00 28.64 O
ATOM 11 C2' A A 4 11.368 12.330 73.953 1.00 27.75 C
ATOM 12 O2' A A 4 11.695 13.096 72.813 1.00 27.70 O
ATOM 13 C1' A A 4 11.497 13.196 75.209 1.00 26.80 C
ATOM 14 N9 A A 4 11.761 12.397 76.405 1.00 26.11 N
ATOM 15 C8 A A 4 11.049 12.405 77.580 1.00 25.42 C
ATOM 16 N7 A A 4 11.513 11.580 78.485 1.00 24.33 N
ATOM 17 C5 A A 4 12.608 10.989 77.869 1.00 23.58 C
ATOM 18 C6 A A 4 13.537 10.029 78.311 1.00 24.61 C
ATOM 19 N6 A A 4 13.517 9.478 79.538 1.00 22.55 N
ATOM 20 N1 A A 4 14.506 9.651 77.446 1.00 23.48 N
ATOM 21 C2 A A 4 14.535 10.213 76.225 1.00 23.64 C
ATOM 22 N3 A A 4 13.724 11.128 75.699 1.00 22.79 N
ATOM 23 C4 A A 4 12.771 11.481 76.584 1.00 24.13 C
ATOM 24 P C A 5 8.645 10.238 72.487 1.00 30.44 P
ATOM 25 OP1 C A 5 8.557 9.989 71.024 1.00 31.19 O
ATOM 26 OP2 C A 5 7.402 10.306 73.294 1.00 28.59 O
ATOM 27 O5' C A 5 9.598 9.151 73.146 1.00 30.10 O
TER
ATOM 1 O3' U B 2 7.356 22.206 78.685 1.00 36.31 O
ATOM 2 P C B 3 6.152 21.313 78.101 1.00 37.05 P
ATOM 3 OP1 C B 3 5.715 21.963 76.842 1.00 38.83 O
ATOM 4 OP2 C B 3 5.166 21.052 79.179 1.00 36.66 O
ATOM 5 O5' C B 3 6.826 19.910 77.765 1.00 38.19 O
ATOM 6 C5' C B 3 7.984 19.825 76.947 1.00 36.36 C
ATOM 7 C4' C B 3 8.711 18.531 77.225 1.00 37.82 C
ATOM 8 O4' C B 3 9.177 18.530 78.602 1.00 37.31 O
ATOM 9 C3' C B 3 7.867 17.270 77.127 1.00 37.01 C
ATOM 10 O3' C B 3 7.777 16.850 75.767 1.00 37.55 O
ATOM 11 C2' C B 3 8.665 16.299 77.987 1.00 37.52 C
ATOM 12 O2' C B 3 9.805 15.802 77.314 1.00 37.79 O
ATOM 13 C1' C B 3 9.130 17.213 79.123 1.00 37.90 C
ATOM 14 N1 C B 3 8.235 17.207 80.290 1.00 38.11 N
ATOM 15 C2 C B 3 8.486 16.299 81.323 1.00 38.12 C
ATOM 16 O2 C B 3 9.472 15.549 81.233 1.00 38.14 O
ATOM 17 N3 C B 3 7.656 16.266 82.392 1.00 36.36 N
ATOM 18 C4 C B 3 6.620 17.104 82.457 1.00 36.29 C
ATOM 19 N4 C B 3 5.828 17.034 83.523 1.00 37.01 N
ATOM 20 C5 C B 3 6.349 18.051 81.427 1.00 36.84 C
ATOM 21 C6 C B 3 7.174 18.067 80.369 1.00 38.21 C
ATOM 22 P A B 4 6.841 15.601 75.372 1.00 38.08 P
ATOM 23 OP1 A B 4 6.787 15.563 73.884 1.00 38.53 O
ATOM 24 OP2 A B 4 5.579 15.691 76.146 1.00 38.81 O
ATOM 25 O5' A B 4 7.668 14.346 75.906 1.00 36.49 O
TER
ATOM 2 P A A 4 6.841 15.601 75.372 1.00 38.08 P
ATOM 3 OP1 A A 4 6.787 15.563 73.884 1.00 38.53 O
ATOM 4 OP2 A A 4 5.579 15.691 76.146 1.00 38.81 O
ATOM 5 O5' A A 4 7.668 14.346 75.906 1.00 36.49 O
ATOM 6 C5' A A 4 7.916 13.203 75.088 1.00 31.28 C
ATOM 7 C4' A A 4 9.280 13.309 74.441 1.00 29.12 C
ATOM 8 O4' A A 4 10.245 13.845 75.388 1.00 27.81 O
ATOM 9 C3' A A 4 9.887 11.991 73.983 1.00 27.97 C
ATOM 10 O3' A A 4 9.427 11.626 72.689 1.00 28.64 O
ATOM 11 C2' A A 4 11.368 12.330 73.953 1.00 27.75 C
ATOM 12 O2' A A 4 11.695 13.096 72.813 1.00 27.70 O
ATOM 13 C1' A A 4 11.497 13.196 75.209 1.00 26.80 C
ATOM 14 N9 A A 4 11.761 12.397 76.405 1.00 26.11 N
ATOM 15 C8 A A 4 11.049 12.405 77.580 1.00 25.42 C
ATOM 16 N7 A A 4 11.513 11.580 78.485 1.00 24.33 N
ATOM 17 C5 A A 4 12.608 10.989 77.869 1.00 23.58 C
ATOM 18 C6 A A 4 13.537 10.029 78.311 1.00 24.61 C
ATOM 19 N6 A A 4 13.517 9.478 79.538 1.00 22.55 N
ATOM 20 N1 A A 4 14.506 9.651 77.446 1.00 23.48 N
ATOM 21 C2 A A 4 14.535 10.213 76.225 1.00 23.64 C
ATOM 22 N3 A A 4 13.724 11.128 75.699 1.00 22.79 N
ATOM 23 C4 A A 4 12.771 11.481 76.584 1.00 24.13 C
ATOM 24 P C A 5 8.645 10.238 72.487 1.00 30.44 P
ATOM 25 OP1 C A 5 8.557 9.989 71.024 1.00 31.19 O
ATOM 26 OP2 C A 5 7.402 10.306 73.294 1.00 28.59 O
ATOM 27 O5' C A 5 9.598 9.151 73.146 1.00 30.10 O
TER
ATOM 1 O3' U B 2 7.356 22.206 78.685 1.00 36.31 O
ATOM 2 P C B 3 6.152 21.313 78.101 1.00 37.05 P
ATOM 3 OP1 C B 3 5.715 21.963 76.842 1.00 38.83 O
ATOM 4 OP2 C B 3 5.166 21.052 79.179 1.00 36.66 O
ATOM 5 O5' C B 3 6.826 19.910 77.765 1.00 38.19 O
ATOM 6 C5' C B 3 7.984 19.825 76.947 1.00 36.36 C
ATOM 7 C4' C B 3 8.711 18.531 77.225 1.00 37.82 C
ATOM 8 O4' C B 3 9.177 18.530 78.602 1.00 37.31 O
ATOM 9 C3' C B 3 7.867 17.270 77.127 1.00 37.01 C
ATOM 10 O3' C B 3 7.777 16.850 75.767 1.00 37.55 O
ATOM 11 C2' C B 3 8.665 16.299 77.987 1.00 37.52 C
ATOM 12 O2' C B 3 9.805 15.802 77.314 1.00 37.79 O
ATOM 13 C1' C B 3 9.130 17.213 79.123 1.00 37.90 C
ATOM 14 N1 C B 3 8.235 17.207 80.290 1.00 38.11 N
ATOM 15 C2 C B 3 8.486 16.299 81.323 1.00 38.12 C
ATOM 16 O2 C B 3 9.472 15.549 81.233 1.00 38.14 O
ATOM 17 N3 C B 3 7.656 16.266 82.392 1.00 36.36 N
ATOM 18 C4 C B 3 6.620 17.104 82.457 1.00 36.29 C
ATOM 19 N4 C B 3 5.828 17.034 83.523 1.00 37.01 N
ATOM 20 C5 C B 3 6.349 18.051 81.427 1.00 36.84 C
ATOM 21 C6 C B 3 7.174 18.067 80.369 1.00 38.21 C
ATOM 22 P A B 4 6.841 15.601 75.372 1.00 38.08 P
ATOM 23 OP1 A B 4 6.787 15.563 73.884 1.00 38.53 O
ATOM 24 OP2 A B 4 5.579 15.691 76.146 1.00 38.81 O
ATOM 25 O5' A B 4 7.668 14.346 75.906 1.00 36.49 O
TER
Atoms:
OP1: (6.787,15.563,73.884)
OP2: (5.579,15.691,76.146)
C3': (9.887,11.991,73.983)
C1': (11.497,13.196,75.209)
C5': (7.916,13.203,75.088)
O4': (10.245,13.845,75.388)
C8: (11.049,12.405,77.580)
O2': (11.695,13.096,72.813)
C6: (13.537,10.029,78.311)
C5: (12.608,10.989,77.869)
C4: (12.771,11.481,76.584)
P: (6.841,15.601,75.372)
C4': (9.280,13.309,74.441)
C2': (11.368,12.330,73.953)
C2: (14.535,10.213,76.225)
N1: (14.506,9.651,77.446)
N3: (13.724,11.128,75.699)
N6: (13.517,9.478,79.538)
N7: (11.513,11.580,78.485)
N9: (11.761,12.397,76.405)
O5': (7.668,14.346,75.906)
O3': (9.427,11.626,72.689)
OP2: (5.579,15.691,76.146)
C3': (9.887,11.991,73.983)
C1': (11.497,13.196,75.209)
C5': (7.916,13.203,75.088)
O4': (10.245,13.845,75.388)
C8: (11.049,12.405,77.580)
O2': (11.695,13.096,72.813)
C6: (13.537,10.029,78.311)
C5: (12.608,10.989,77.869)
C4: (12.771,11.481,76.584)
P: (6.841,15.601,75.372)
C4': (9.280,13.309,74.441)
C2': (11.368,12.330,73.953)
C2: (14.535,10.213,76.225)
N1: (14.506,9.651,77.446)
N3: (13.724,11.128,75.699)
N6: (13.517,9.478,79.538)
N7: (11.513,11.580,78.485)
N9: (11.761,12.397,76.405)
O5': (7.668,14.346,75.906)
O3': (9.427,11.626,72.689)
C2: (8.486,16.299,81.323)
OP1: (5.715,21.963,76.842)
OP2: (5.166,21.052,79.179)
C4: (6.620,17.104,82.457)
O5': (6.826,19.910,77.765)
C3': (7.867,17.270,77.127)
C1': (9.130,17.213,79.123)
O4': (9.177,18.530,78.602)
C5': (7.984,19.825,76.947)
P: (6.152,21.313,78.101)
O2: (9.472,15.549,81.233)
C4': (8.711,18.531,77.225)
C2': (8.665,16.299,77.987)
O2': (9.805,15.802,77.314)
N1: (8.235,17.207,80.290)
N3: (7.656,16.266,82.392)
N4: (5.828,17.034,83.523)
C6: (7.174,18.067,80.369)
C5: (6.349,18.051,81.427)
O3': (7.777,16.850,75.767)
OP1: (5.715,21.963,76.842)
OP2: (5.166,21.052,79.179)
C4: (6.620,17.104,82.457)
O5': (6.826,19.910,77.765)
C3': (7.867,17.270,77.127)
C1': (9.130,17.213,79.123)
O4': (9.177,18.530,78.602)
C5': (7.984,19.825,76.947)
P: (6.152,21.313,78.101)
O2: (9.472,15.549,81.233)
C4': (8.711,18.531,77.225)
C2': (8.665,16.299,77.987)
O2': (9.805,15.802,77.314)
N1: (8.235,17.207,80.290)
N3: (7.656,16.266,82.392)
N4: (5.828,17.034,83.523)
C6: (7.174,18.067,80.369)
C5: (6.349,18.051,81.427)
O3': (7.777,16.850,75.767)
Image (generated by PyMOL):