Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12092:12093
Extra
PDB:
ATOM 1 O3' C A2091 -0.909 -1.980 61.500 1.00 49.83 O
ATOM 2 P C A2092 -1.005 -0.566 60.792 1.00 46.54 P
ATOM 3 OP1 C A2092 0.304 -0.322 60.119 1.00 46.33 O
ATOM 4 OP2 C A2092 -1.468 0.410 61.811 1.00 46.65 O
ATOM 5 O5' C A2092 -2.151 -0.823 59.701 1.00 46.83 O
ATOM 6 C5' C A2092 -2.081 -1.942 58.833 1.00 46.81 C
ATOM 7 C4' C A2092 -3.438 -2.439 58.448 1.00 47.10 C
ATOM 8 O4' C A2092 -4.089 -3.072 59.586 1.00 47.13 O
ATOM 9 C3' C A2092 -4.417 -1.395 58.024 1.00 47.41 C
ATOM 10 O3' C A2092 -4.198 -0.968 56.710 1.00 47.50 O
ATOM 11 C2' C A2092 -5.748 -2.111 58.230 1.00 47.65 C
ATOM 12 O2' C A2092 -5.941 -3.060 57.214 1.00 47.73 O
ATOM 13 C1' C A2092 -5.483 -2.876 59.511 1.00 47.46 C
ATOM 14 N1 C A2092 -5.910 -2.138 60.705 1.00 47.51 N
ATOM 15 C2 C A2092 -7.205 -2.239 61.241 1.00 47.77 C
ATOM 16 O2 C A2092 -8.066 -2.977 60.690 1.00 47.97 O
ATOM 17 N3 C A2092 -7.512 -1.529 62.374 1.00 47.82 N
ATOM 18 C4 C A2092 -6.595 -0.752 62.974 1.00 47.63 C
ATOM 19 N4 C A2092 -6.907 -0.066 64.094 1.00 47.69 N
ATOM 20 C5 C A2092 -5.268 -0.664 62.442 1.00 47.36 C
ATOM 21 C6 C A2092 -4.988 -1.376 61.346 1.00 47.31 C
ATOM 22 P U A2093 -4.661 0.502 56.261 1.00 45.61 P
ATOM 23 OP1 U A2093 -6.163 0.512 56.293 1.00 45.95 O
ATOM 24 OP2 U A2093 -3.980 0.823 54.963 1.00 45.60 O
ATOM 25 O5' U A2093 -4.055 1.419 57.426 1.00 45.44 O
TER
ATOM 1 O3' C B2092 -4.198 -0.968 56.710 1.00 47.50 O
ATOM 2 P U B2093 -4.661 0.502 56.261 1.00 45.61 P
ATOM 3 OP1 U B2093 -6.163 0.512 56.293 1.00 45.95 O
ATOM 4 OP2 U B2093 -3.980 0.823 54.963 1.00 45.60 O
ATOM 5 O5' U B2093 -4.055 1.419 57.426 1.00 45.44 O
ATOM 6 C5' U B2093 -3.512 2.725 57.164 1.00 45.45 C
ATOM 7 C4' U B2093 -3.570 3.603 58.391 1.00 45.44 C
ATOM 8 O4' U B2093 -4.948 3.648 58.849 1.00 45.72 O
ATOM 9 C3' U B2093 -2.739 3.089 59.583 1.00 45.13 C
ATOM 10 O3' U B2093 -2.235 4.173 60.360 1.00 45.07 O
ATOM 11 C2' U B2093 -3.772 2.326 60.416 1.00 45.23 C
ATOM 12 O2' U B2093 -3.459 2.242 61.796 1.00 45.08 O
ATOM 13 C1' U B2093 -5.038 3.150 60.175 1.00 45.60 C
ATOM 14 N1 U B2093 -6.287 2.382 60.311 1.00 45.81 N
ATOM 15 C2 U B2093 -7.015 2.461 61.506 1.00 45.92 C
ATOM 16 O2 U B2093 -6.684 3.150 62.446 1.00 45.85 O
ATOM 17 N3 U B2093 -8.179 1.755 61.619 1.00 46.12 N
ATOM 18 C4 U B2093 -8.675 0.984 60.654 1.00 46.24 C
ATOM 19 O4 U B2093 -9.704 0.421 60.880 1.00 46.43 O
ATOM 20 C5 U B2093 -7.897 0.926 59.470 1.00 46.13 C
ATOM 21 C6 U B2093 -6.759 1.605 59.308 1.00 45.93 C
ATOM 22 P C B2094 -1.342 5.305 59.691 1.00 44.87 P
ATOM 23 OP1 C B2094 -0.809 4.759 58.419 1.00 44.79 O
ATOM 24 OP2 C B2094 -0.388 5.793 60.731 1.00 44.65 O
ATOM 25 O5' C B2094 -2.390 6.428 59.384 1.00 45.23 O
TER
ATOM 2 P C A2092 -1.005 -0.566 60.792 1.00 46.54 P
ATOM 3 OP1 C A2092 0.304 -0.322 60.119 1.00 46.33 O
ATOM 4 OP2 C A2092 -1.468 0.410 61.811 1.00 46.65 O
ATOM 5 O5' C A2092 -2.151 -0.823 59.701 1.00 46.83 O
ATOM 6 C5' C A2092 -2.081 -1.942 58.833 1.00 46.81 C
ATOM 7 C4' C A2092 -3.438 -2.439 58.448 1.00 47.10 C
ATOM 8 O4' C A2092 -4.089 -3.072 59.586 1.00 47.13 O
ATOM 9 C3' C A2092 -4.417 -1.395 58.024 1.00 47.41 C
ATOM 10 O3' C A2092 -4.198 -0.968 56.710 1.00 47.50 O
ATOM 11 C2' C A2092 -5.748 -2.111 58.230 1.00 47.65 C
ATOM 12 O2' C A2092 -5.941 -3.060 57.214 1.00 47.73 O
ATOM 13 C1' C A2092 -5.483 -2.876 59.511 1.00 47.46 C
ATOM 14 N1 C A2092 -5.910 -2.138 60.705 1.00 47.51 N
ATOM 15 C2 C A2092 -7.205 -2.239 61.241 1.00 47.77 C
ATOM 16 O2 C A2092 -8.066 -2.977 60.690 1.00 47.97 O
ATOM 17 N3 C A2092 -7.512 -1.529 62.374 1.00 47.82 N
ATOM 18 C4 C A2092 -6.595 -0.752 62.974 1.00 47.63 C
ATOM 19 N4 C A2092 -6.907 -0.066 64.094 1.00 47.69 N
ATOM 20 C5 C A2092 -5.268 -0.664 62.442 1.00 47.36 C
ATOM 21 C6 C A2092 -4.988 -1.376 61.346 1.00 47.31 C
ATOM 22 P U A2093 -4.661 0.502 56.261 1.00 45.61 P
ATOM 23 OP1 U A2093 -6.163 0.512 56.293 1.00 45.95 O
ATOM 24 OP2 U A2093 -3.980 0.823 54.963 1.00 45.60 O
ATOM 25 O5' U A2093 -4.055 1.419 57.426 1.00 45.44 O
TER
ATOM 1 O3' C B2092 -4.198 -0.968 56.710 1.00 47.50 O
ATOM 2 P U B2093 -4.661 0.502 56.261 1.00 45.61 P
ATOM 3 OP1 U B2093 -6.163 0.512 56.293 1.00 45.95 O
ATOM 4 OP2 U B2093 -3.980 0.823 54.963 1.00 45.60 O
ATOM 5 O5' U B2093 -4.055 1.419 57.426 1.00 45.44 O
ATOM 6 C5' U B2093 -3.512 2.725 57.164 1.00 45.45 C
ATOM 7 C4' U B2093 -3.570 3.603 58.391 1.00 45.44 C
ATOM 8 O4' U B2093 -4.948 3.648 58.849 1.00 45.72 O
ATOM 9 C3' U B2093 -2.739 3.089 59.583 1.00 45.13 C
ATOM 10 O3' U B2093 -2.235 4.173 60.360 1.00 45.07 O
ATOM 11 C2' U B2093 -3.772 2.326 60.416 1.00 45.23 C
ATOM 12 O2' U B2093 -3.459 2.242 61.796 1.00 45.08 O
ATOM 13 C1' U B2093 -5.038 3.150 60.175 1.00 45.60 C
ATOM 14 N1 U B2093 -6.287 2.382 60.311 1.00 45.81 N
ATOM 15 C2 U B2093 -7.015 2.461 61.506 1.00 45.92 C
ATOM 16 O2 U B2093 -6.684 3.150 62.446 1.00 45.85 O
ATOM 17 N3 U B2093 -8.179 1.755 61.619 1.00 46.12 N
ATOM 18 C4 U B2093 -8.675 0.984 60.654 1.00 46.24 C
ATOM 19 O4 U B2093 -9.704 0.421 60.880 1.00 46.43 O
ATOM 20 C5 U B2093 -7.897 0.926 59.470 1.00 46.13 C
ATOM 21 C6 U B2093 -6.759 1.605 59.308 1.00 45.93 C
ATOM 22 P C B2094 -1.342 5.305 59.691 1.00 44.87 P
ATOM 23 OP1 C B2094 -0.809 4.759 58.419 1.00 44.79 O
ATOM 24 OP2 C B2094 -0.388 5.793 60.731 1.00 44.65 O
ATOM 25 O5' C B2094 -2.390 6.428 59.384 1.00 45.23 O
TER
Atoms:
C2: (-7.205,-2.239,61.241)
OP1: (0.304,-0.322,60.119)
OP2: (-1.468,0.410,61.811)
C4: (-6.595,-0.752,62.974)
O5': (-2.151,-0.823,59.701)
C3': (-4.417,-1.395,58.024)
C1': (-5.483,-2.876,59.511)
O4': (-4.089,-3.072,59.586)
C5': (-2.081,-1.942,58.833)
P: (-1.005,-0.566,60.792)
O2: (-8.066,-2.977,60.690)
C4': (-3.438,-2.439,58.448)
C2': (-5.748,-2.111,58.230)
O2': (-5.941,-3.060,57.214)
N1: (-5.910,-2.138,60.705)
N3: (-7.512,-1.529,62.374)
N4: (-6.907,-0.066,64.094)
C6: (-4.988,-1.376,61.346)
C5: (-5.268,-0.664,62.442)
O3': (-4.198,-0.968,56.710)
OP1: (0.304,-0.322,60.119)
OP2: (-1.468,0.410,61.811)
C4: (-6.595,-0.752,62.974)
O5': (-2.151,-0.823,59.701)
C3': (-4.417,-1.395,58.024)
C1': (-5.483,-2.876,59.511)
O4': (-4.089,-3.072,59.586)
C5': (-2.081,-1.942,58.833)
P: (-1.005,-0.566,60.792)
O2: (-8.066,-2.977,60.690)
C4': (-3.438,-2.439,58.448)
C2': (-5.748,-2.111,58.230)
O2': (-5.941,-3.060,57.214)
N1: (-5.910,-2.138,60.705)
N3: (-7.512,-1.529,62.374)
N4: (-6.907,-0.066,64.094)
C6: (-4.988,-1.376,61.346)
C5: (-5.268,-0.664,62.442)
O3': (-4.198,-0.968,56.710)
C4: (-8.675,0.984,60.654)
N3: (-8.179,1.755,61.619)
OP1: (-6.163,0.512,56.293)
OP2: (-3.980,0.823,54.963)
C2: (-7.015,2.461,61.506)
C1': (-5.038,3.150,60.175)
C3': (-2.739,3.089,59.583)
O5': (-4.055,1.419,57.426)
O4': (-4.948,3.648,58.849)
C5': (-3.512,2.725,57.164)
P: (-4.661,0.502,56.261)
C4': (-3.570,3.603,58.391)
C2': (-3.772,2.326,60.416)
O2': (-3.459,2.242,61.796)
N1: (-6.287,2.382,60.311)
O4: (-9.704,0.421,60.880)
O2: (-6.684,3.150,62.446)
C6: (-6.759,1.605,59.308)
C5: (-7.897,0.926,59.470)
O3': (-2.235,4.173,60.360)
N3: (-8.179,1.755,61.619)
OP1: (-6.163,0.512,56.293)
OP2: (-3.980,0.823,54.963)
C2: (-7.015,2.461,61.506)
C1': (-5.038,3.150,60.175)
C3': (-2.739,3.089,59.583)
O5': (-4.055,1.419,57.426)
O4': (-4.948,3.648,58.849)
C5': (-3.512,2.725,57.164)
P: (-4.661,0.502,56.261)
C4': (-3.570,3.603,58.391)
C2': (-3.772,2.326,60.416)
O2': (-3.459,2.242,61.796)
N1: (-6.287,2.382,60.311)
O4: (-9.704,0.421,60.880)
O2: (-6.684,3.150,62.446)
C6: (-6.759,1.605,59.308)
C5: (-7.897,0.926,59.470)
O3': (-2.235,4.173,60.360)
Image (generated by PyMOL):