Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y17:Y18
Extra
PDB:
ATOM 1 O3' U A 16 5.738 13.140 25.838 1.00 37.36 O
ATOM 2 P C A 17 4.773 11.883 25.601 1.00 38.56 P
ATOM 3 OP1 C A 17 3.996 12.129 24.366 1.00 38.18 O
ATOM 4 OP2 C A 17 4.069 11.596 26.871 1.00 37.81 O
ATOM 5 O5' C A 17 5.803 10.689 25.329 1.00 38.22 O
ATOM 6 C5' C A 17 6.686 10.756 24.214 1.00 37.69 C
ATOM 7 C4' C A 17 7.872 9.826 24.400 1.00 37.31 C
ATOM 8 O4' C A 17 8.539 10.125 25.651 1.00 36.97 O
ATOM 9 C3' C A 17 7.531 8.349 24.521 1.00 37.36 C
ATOM 10 O3' C A 17 7.322 7.774 23.238 1.00 37.47 O
ATOM 11 C2' C A 17 8.799 7.820 25.182 1.00 37.12 C
ATOM 12 O2' C A 17 9.867 7.666 24.268 1.00 36.83 O
ATOM 13 C1' C A 17 9.103 8.937 26.180 1.00 37.02 C
ATOM 14 N1 C A 17 8.517 8.667 27.527 1.00 36.79 N
ATOM 15 C2 C A 17 9.157 7.770 28.391 1.00 36.75 C
ATOM 16 O2 C A 17 10.208 7.228 28.028 1.00 36.48 O
ATOM 17 N3 C A 17 8.606 7.521 29.607 1.00 36.70 N
ATOM 18 C4 C A 17 7.471 8.126 29.964 1.00 36.75 C
ATOM 19 N4 C A 17 6.964 7.854 31.172 1.00 36.35 N
ATOM 20 C5 C A 17 6.803 9.039 29.096 1.00 36.97 C
ATOM 21 C6 C A 17 7.353 9.275 27.900 1.00 36.95 C
ATOM 22 P U A 18 6.219 6.631 23.038 1.00 37.43 P
ATOM 23 OP1 U A 18 6.682 5.419 23.753 1.00 37.55 O
ATOM 24 OP2 U A 18 5.910 6.563 21.593 1.00 37.47 O
ATOM 25 O5' U A 18 4.934 7.216 23.791 1.00 37.23 O
TER
ATOM 1 O3' C B 17 7.322 7.774 23.238 1.00 37.47 O
ATOM 2 P U B 18 6.219 6.631 23.038 1.00 37.43 P
ATOM 3 OP1 U B 18 6.682 5.419 23.753 1.00 37.55 O
ATOM 4 OP2 U B 18 5.910 6.563 21.593 1.00 37.47 O
ATOM 5 O5' U B 18 4.934 7.216 23.791 1.00 37.23 O
ATOM 6 C5' U B 18 3.711 6.488 23.779 1.00 36.50 C
ATOM 7 C4' U B 18 2.994 6.560 25.119 1.00 36.27 C
ATOM 8 O4' U B 18 3.610 5.658 26.072 1.00 35.96 O
ATOM 9 C3' U B 18 2.975 7.919 25.810 1.00 36.47 C
ATOM 10 O3' U B 18 1.766 8.036 26.549 1.00 36.73 O
ATOM 11 C2' U B 18 4.159 7.816 26.765 1.00 36.05 C
ATOM 12 O2' U B 18 4.034 8.717 27.848 1.00 36.01 O
ATOM 13 C1' U B 18 3.970 6.378 27.234 1.00 35.63 C
ATOM 14 N1 U B 18 5.160 5.696 27.822 1.00 35.55 N
ATOM 15 C2 U B 18 5.150 5.355 29.159 1.00 35.10 C
ATOM 16 O2 U B 18 4.226 5.619 29.907 1.00 34.80 O
ATOM 17 N3 U B 18 6.275 4.701 29.598 1.00 35.01 N
ATOM 18 C4 U B 18 7.379 4.347 28.844 1.00 35.05 C
ATOM 19 O4 U B 18 8.317 3.762 29.374 1.00 35.05 O
ATOM 20 C5 U B 18 7.310 4.723 27.456 1.00 35.31 C
ATOM 21 C6 U B 18 6.224 5.361 27.007 1.00 35.65 C
ATOM 22 P G B 19 0.403 8.466 25.831 1.00 37.41 P
ATOM 23 OP1 G B 19 0.390 7.900 24.462 1.00 36.72 O
ATOM 24 OP2 G B 19 0.233 9.924 26.032 1.00 37.43 O
ATOM 25 O5' G B 19 -0.697 7.702 26.702 1.00 37.11 O
TER
ATOM 2 P C A 17 4.773 11.883 25.601 1.00 38.56 P
ATOM 3 OP1 C A 17 3.996 12.129 24.366 1.00 38.18 O
ATOM 4 OP2 C A 17 4.069 11.596 26.871 1.00 37.81 O
ATOM 5 O5' C A 17 5.803 10.689 25.329 1.00 38.22 O
ATOM 6 C5' C A 17 6.686 10.756 24.214 1.00 37.69 C
ATOM 7 C4' C A 17 7.872 9.826 24.400 1.00 37.31 C
ATOM 8 O4' C A 17 8.539 10.125 25.651 1.00 36.97 O
ATOM 9 C3' C A 17 7.531 8.349 24.521 1.00 37.36 C
ATOM 10 O3' C A 17 7.322 7.774 23.238 1.00 37.47 O
ATOM 11 C2' C A 17 8.799 7.820 25.182 1.00 37.12 C
ATOM 12 O2' C A 17 9.867 7.666 24.268 1.00 36.83 O
ATOM 13 C1' C A 17 9.103 8.937 26.180 1.00 37.02 C
ATOM 14 N1 C A 17 8.517 8.667 27.527 1.00 36.79 N
ATOM 15 C2 C A 17 9.157 7.770 28.391 1.00 36.75 C
ATOM 16 O2 C A 17 10.208 7.228 28.028 1.00 36.48 O
ATOM 17 N3 C A 17 8.606 7.521 29.607 1.00 36.70 N
ATOM 18 C4 C A 17 7.471 8.126 29.964 1.00 36.75 C
ATOM 19 N4 C A 17 6.964 7.854 31.172 1.00 36.35 N
ATOM 20 C5 C A 17 6.803 9.039 29.096 1.00 36.97 C
ATOM 21 C6 C A 17 7.353 9.275 27.900 1.00 36.95 C
ATOM 22 P U A 18 6.219 6.631 23.038 1.00 37.43 P
ATOM 23 OP1 U A 18 6.682 5.419 23.753 1.00 37.55 O
ATOM 24 OP2 U A 18 5.910 6.563 21.593 1.00 37.47 O
ATOM 25 O5' U A 18 4.934 7.216 23.791 1.00 37.23 O
TER
ATOM 1 O3' C B 17 7.322 7.774 23.238 1.00 37.47 O
ATOM 2 P U B 18 6.219 6.631 23.038 1.00 37.43 P
ATOM 3 OP1 U B 18 6.682 5.419 23.753 1.00 37.55 O
ATOM 4 OP2 U B 18 5.910 6.563 21.593 1.00 37.47 O
ATOM 5 O5' U B 18 4.934 7.216 23.791 1.00 37.23 O
ATOM 6 C5' U B 18 3.711 6.488 23.779 1.00 36.50 C
ATOM 7 C4' U B 18 2.994 6.560 25.119 1.00 36.27 C
ATOM 8 O4' U B 18 3.610 5.658 26.072 1.00 35.96 O
ATOM 9 C3' U B 18 2.975 7.919 25.810 1.00 36.47 C
ATOM 10 O3' U B 18 1.766 8.036 26.549 1.00 36.73 O
ATOM 11 C2' U B 18 4.159 7.816 26.765 1.00 36.05 C
ATOM 12 O2' U B 18 4.034 8.717 27.848 1.00 36.01 O
ATOM 13 C1' U B 18 3.970 6.378 27.234 1.00 35.63 C
ATOM 14 N1 U B 18 5.160 5.696 27.822 1.00 35.55 N
ATOM 15 C2 U B 18 5.150 5.355 29.159 1.00 35.10 C
ATOM 16 O2 U B 18 4.226 5.619 29.907 1.00 34.80 O
ATOM 17 N3 U B 18 6.275 4.701 29.598 1.00 35.01 N
ATOM 18 C4 U B 18 7.379 4.347 28.844 1.00 35.05 C
ATOM 19 O4 U B 18 8.317 3.762 29.374 1.00 35.05 O
ATOM 20 C5 U B 18 7.310 4.723 27.456 1.00 35.31 C
ATOM 21 C6 U B 18 6.224 5.361 27.007 1.00 35.65 C
ATOM 22 P G B 19 0.403 8.466 25.831 1.00 37.41 P
ATOM 23 OP1 G B 19 0.390 7.900 24.462 1.00 36.72 O
ATOM 24 OP2 G B 19 0.233 9.924 26.032 1.00 37.43 O
ATOM 25 O5' G B 19 -0.697 7.702 26.702 1.00 37.11 O
TER
Atoms:
C2: (9.157,7.770,28.391)
OP1: (3.996,12.129,24.366)
OP2: (4.069,11.596,26.871)
C4: (7.471,8.126,29.964)
O5': (5.803,10.689,25.329)
C3': (7.531,8.349,24.521)
C1': (9.103,8.937,26.180)
O4': (8.539,10.125,25.651)
C5': (6.686,10.756,24.214)
P: (4.773,11.883,25.601)
O2: (10.208,7.228,28.028)
C4': (7.872,9.826,24.400)
C2': (8.799,7.820,25.182)
O2': (9.867,7.666,24.268)
N1: (8.517,8.667,27.527)
N3: (8.606,7.521,29.607)
N4: (6.964,7.854,31.172)
C6: (7.353,9.275,27.900)
C5: (6.803,9.039,29.096)
O3': (7.322,7.774,23.238)
OP1: (3.996,12.129,24.366)
OP2: (4.069,11.596,26.871)
C4: (7.471,8.126,29.964)
O5': (5.803,10.689,25.329)
C3': (7.531,8.349,24.521)
C1': (9.103,8.937,26.180)
O4': (8.539,10.125,25.651)
C5': (6.686,10.756,24.214)
P: (4.773,11.883,25.601)
O2: (10.208,7.228,28.028)
C4': (7.872,9.826,24.400)
C2': (8.799,7.820,25.182)
O2': (9.867,7.666,24.268)
N1: (8.517,8.667,27.527)
N3: (8.606,7.521,29.607)
N4: (6.964,7.854,31.172)
C6: (7.353,9.275,27.900)
C5: (6.803,9.039,29.096)
O3': (7.322,7.774,23.238)
C4: (7.379,4.347,28.844)
N3: (6.275,4.701,29.598)
OP1: (6.682,5.419,23.753)
OP2: (5.910,6.563,21.593)
C2: (5.150,5.355,29.159)
C1': (3.970,6.378,27.234)
C3': (2.975,7.919,25.810)
O5': (4.934,7.216,23.791)
O4': (3.610,5.658,26.072)
C5': (3.711,6.488,23.779)
P: (6.219,6.631,23.038)
C4': (2.994,6.560,25.119)
C2': (4.159,7.816,26.765)
O2': (4.034,8.717,27.848)
N1: (5.160,5.696,27.822)
O4: (8.317,3.762,29.374)
O2: (4.226,5.619,29.907)
C6: (6.224,5.361,27.007)
C5: (7.310,4.723,27.456)
O3': (1.766,8.036,26.549)
N3: (6.275,4.701,29.598)
OP1: (6.682,5.419,23.753)
OP2: (5.910,6.563,21.593)
C2: (5.150,5.355,29.159)
C1': (3.970,6.378,27.234)
C3': (2.975,7.919,25.810)
O5': (4.934,7.216,23.791)
O4': (3.610,5.658,26.072)
C5': (3.711,6.488,23.779)
P: (6.219,6.631,23.038)
C4': (2.994,6.560,25.119)
C2': (4.159,7.816,26.765)
O2': (4.034,8.717,27.848)
N1: (5.160,5.696,27.822)
O4: (8.317,3.762,29.374)
O2: (4.226,5.619,29.907)
C6: (6.224,5.361,27.007)
C5: (7.310,4.723,27.456)
O3': (1.766,8.036,26.549)
Image (generated by PyMOL):