Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12004:12048
Extra
PDB:
ATOM 1 O3' C A2003 -16.031 -22.069 88.707 1.00 47.15 O
ATOM 2 P C A2004 -15.934 -22.628 90.208 1.00 52.56 P
ATOM 3 OP1 C A2004 -16.339 -24.072 90.164 1.00 52.74 O
ATOM 4 OP2 C A2004 -16.696 -21.701 91.075 1.00 52.79 O
ATOM 5 O5' C A2004 -14.393 -22.507 90.531 1.00 52.22 O
ATOM 6 C5' C A2004 -13.446 -23.182 89.733 1.00 51.95 C
ATOM 7 C4' C A2004 -12.485 -23.952 90.571 1.00 51.87 C
ATOM 8 O4' C A2004 -11.604 -23.035 91.257 1.00 51.69 O
ATOM 9 C3' C A2004 -13.099 -24.805 91.661 1.00 52.19 C
ATOM 10 O3' C A2004 -12.208 -25.889 91.878 1.00 52.10 O
ATOM 11 C2' C A2004 -13.045 -23.869 92.862 1.00 52.26 C
ATOM 12 O2' C A2004 -13.214 -24.500 94.118 1.00 52.51 O
ATOM 13 C1' C A2004 -11.643 -23.302 92.644 1.00 51.88 C
ATOM 14 N1 C A2004 -11.319 -22.035 93.350 1.00 51.83 N
ATOM 15 C2 C A2004 -9.973 -21.718 93.466 1.00 51.53 C
ATOM 16 O2 C A2004 -9.057 -22.496 93.087 1.00 51.33 O
ATOM 17 N3 C A2004 -9.705 -20.564 94.072 1.00 51.50 N
ATOM 18 C4 C A2004 -10.653 -19.759 94.554 1.00 51.74 C
ATOM 19 N4 C A2004 -10.304 -18.626 95.166 1.00 51.71 N
ATOM 20 C5 C A2004 -12.013 -20.049 94.422 1.00 52.03 C
ATOM 21 C6 C A2004 -12.275 -21.185 93.797 1.00 52.06 C
ATOM 22 P A A2005 -12.556 -27.332 91.296 1.00 54.10 P
ATOM 23 OP1 A A2005 -14.015 -27.307 90.960 1.00 54.39 O
ATOM 24 OP2 A A2005 -12.078 -28.330 92.281 1.00 54.20 O
ATOM 25 O5' A A2005 -11.695 -27.442 89.973 1.00 53.77 O
TER
ATOM 1 O3' G B2047 -15.275 -22.597 100.240 1.00 57.84 O
ATOM 2 P U B2048 -15.498 -21.703 98.942 1.00 49.17 P
ATOM 3 OP1 U B2048 -16.665 -20.854 99.233 1.00 49.46 O
ATOM 4 OP2 U B2048 -15.534 -22.608 97.761 1.00 49.04 O
ATOM 5 O5' U B2048 -14.211 -20.799 98.912 1.00 48.82 O
ATOM 6 C5' U B2048 -14.004 -19.814 99.913 1.00 48.90 C
ATOM 7 C4' U B2048 -12.649 -19.202 99.778 1.00 48.55 C
ATOM 8 O4' U B2048 -11.656 -20.246 99.870 1.00 48.39 O
ATOM 9 C3' U B2048 -12.371 -18.539 98.449 1.00 48.24 C
ATOM 10 O3' U B2048 -12.843 -17.198 98.414 1.00 48.31 O
ATOM 11 C2' U B2048 -10.852 -18.665 98.324 1.00 47.89 C
ATOM 12 O2' U B2048 -10.212 -17.686 99.105 1.00 47.86 O
ATOM 13 C1' U B2048 -10.593 -19.994 98.993 1.00 48.00 C
ATOM 14 N1 U B2048 -10.494 -21.100 98.042 1.00 47.87 N
ATOM 15 C2 U B2048 -9.245 -21.329 97.568 1.00 47.54 C
ATOM 16 O2 U B2048 -8.336 -20.640 97.880 1.00 47.37 O
ATOM 17 N3 U B2048 -9.091 -22.364 96.717 1.00 47.43 N
ATOM 18 C4 U B2048 -10.104 -23.188 96.302 1.00 47.63 C
ATOM 19 O4 U B2048 -9.809 -24.074 95.516 1.00 47.50 O
ATOM 20 C5 U B2048 -11.399 -22.925 96.841 1.00 47.97 C
ATOM 21 C6 U B2048 -11.545 -21.915 97.697 1.00 48.08 C
ATOM 22 P A B2049 -13.216 -16.487 97.025 1.00 53.54 P
ATOM 23 OP1 A B2049 -13.877 -15.215 97.360 1.00 53.73 O
ATOM 24 OP2 A B2049 -13.944 -17.495 96.223 1.00 53.61 O
ATOM 25 O5' A B2049 -11.798 -16.173 96.361 1.00 53.11 O
TER
ATOM 2 P C A2004 -15.934 -22.628 90.208 1.00 52.56 P
ATOM 3 OP1 C A2004 -16.339 -24.072 90.164 1.00 52.74 O
ATOM 4 OP2 C A2004 -16.696 -21.701 91.075 1.00 52.79 O
ATOM 5 O5' C A2004 -14.393 -22.507 90.531 1.00 52.22 O
ATOM 6 C5' C A2004 -13.446 -23.182 89.733 1.00 51.95 C
ATOM 7 C4' C A2004 -12.485 -23.952 90.571 1.00 51.87 C
ATOM 8 O4' C A2004 -11.604 -23.035 91.257 1.00 51.69 O
ATOM 9 C3' C A2004 -13.099 -24.805 91.661 1.00 52.19 C
ATOM 10 O3' C A2004 -12.208 -25.889 91.878 1.00 52.10 O
ATOM 11 C2' C A2004 -13.045 -23.869 92.862 1.00 52.26 C
ATOM 12 O2' C A2004 -13.214 -24.500 94.118 1.00 52.51 O
ATOM 13 C1' C A2004 -11.643 -23.302 92.644 1.00 51.88 C
ATOM 14 N1 C A2004 -11.319 -22.035 93.350 1.00 51.83 N
ATOM 15 C2 C A2004 -9.973 -21.718 93.466 1.00 51.53 C
ATOM 16 O2 C A2004 -9.057 -22.496 93.087 1.00 51.33 O
ATOM 17 N3 C A2004 -9.705 -20.564 94.072 1.00 51.50 N
ATOM 18 C4 C A2004 -10.653 -19.759 94.554 1.00 51.74 C
ATOM 19 N4 C A2004 -10.304 -18.626 95.166 1.00 51.71 N
ATOM 20 C5 C A2004 -12.013 -20.049 94.422 1.00 52.03 C
ATOM 21 C6 C A2004 -12.275 -21.185 93.797 1.00 52.06 C
ATOM 22 P A A2005 -12.556 -27.332 91.296 1.00 54.10 P
ATOM 23 OP1 A A2005 -14.015 -27.307 90.960 1.00 54.39 O
ATOM 24 OP2 A A2005 -12.078 -28.330 92.281 1.00 54.20 O
ATOM 25 O5' A A2005 -11.695 -27.442 89.973 1.00 53.77 O
TER
ATOM 1 O3' G B2047 -15.275 -22.597 100.240 1.00 57.84 O
ATOM 2 P U B2048 -15.498 -21.703 98.942 1.00 49.17 P
ATOM 3 OP1 U B2048 -16.665 -20.854 99.233 1.00 49.46 O
ATOM 4 OP2 U B2048 -15.534 -22.608 97.761 1.00 49.04 O
ATOM 5 O5' U B2048 -14.211 -20.799 98.912 1.00 48.82 O
ATOM 6 C5' U B2048 -14.004 -19.814 99.913 1.00 48.90 C
ATOM 7 C4' U B2048 -12.649 -19.202 99.778 1.00 48.55 C
ATOM 8 O4' U B2048 -11.656 -20.246 99.870 1.00 48.39 O
ATOM 9 C3' U B2048 -12.371 -18.539 98.449 1.00 48.24 C
ATOM 10 O3' U B2048 -12.843 -17.198 98.414 1.00 48.31 O
ATOM 11 C2' U B2048 -10.852 -18.665 98.324 1.00 47.89 C
ATOM 12 O2' U B2048 -10.212 -17.686 99.105 1.00 47.86 O
ATOM 13 C1' U B2048 -10.593 -19.994 98.993 1.00 48.00 C
ATOM 14 N1 U B2048 -10.494 -21.100 98.042 1.00 47.87 N
ATOM 15 C2 U B2048 -9.245 -21.329 97.568 1.00 47.54 C
ATOM 16 O2 U B2048 -8.336 -20.640 97.880 1.00 47.37 O
ATOM 17 N3 U B2048 -9.091 -22.364 96.717 1.00 47.43 N
ATOM 18 C4 U B2048 -10.104 -23.188 96.302 1.00 47.63 C
ATOM 19 O4 U B2048 -9.809 -24.074 95.516 1.00 47.50 O
ATOM 20 C5 U B2048 -11.399 -22.925 96.841 1.00 47.97 C
ATOM 21 C6 U B2048 -11.545 -21.915 97.697 1.00 48.08 C
ATOM 22 P A B2049 -13.216 -16.487 97.025 1.00 53.54 P
ATOM 23 OP1 A B2049 -13.877 -15.215 97.360 1.00 53.73 O
ATOM 24 OP2 A B2049 -13.944 -17.495 96.223 1.00 53.61 O
ATOM 25 O5' A B2049 -11.798 -16.173 96.361 1.00 53.11 O
TER
Atoms:
C2: (-9.973,-21.718,93.466)
OP1: (-16.339,-24.072,90.164)
OP2: (-16.696,-21.701,91.075)
C4: (-10.653,-19.759,94.554)
O5': (-14.393,-22.507,90.531)
C3': (-13.099,-24.805,91.661)
C1': (-11.643,-23.302,92.644)
O4': (-11.604,-23.035,91.257)
C5': (-13.446,-23.182,89.733)
P: (-15.934,-22.628,90.208)
O2: (-9.057,-22.496,93.087)
C4': (-12.485,-23.952,90.571)
C2': (-13.045,-23.869,92.862)
O2': (-13.214,-24.500,94.118)
N1: (-11.319,-22.035,93.350)
N3: (-9.705,-20.564,94.072)
N4: (-10.304,-18.626,95.166)
C6: (-12.275,-21.185,93.797)
C5: (-12.013,-20.049,94.422)
O3': (-12.208,-25.889,91.878)
OP1: (-16.339,-24.072,90.164)
OP2: (-16.696,-21.701,91.075)
C4: (-10.653,-19.759,94.554)
O5': (-14.393,-22.507,90.531)
C3': (-13.099,-24.805,91.661)
C1': (-11.643,-23.302,92.644)
O4': (-11.604,-23.035,91.257)
C5': (-13.446,-23.182,89.733)
P: (-15.934,-22.628,90.208)
O2: (-9.057,-22.496,93.087)
C4': (-12.485,-23.952,90.571)
C2': (-13.045,-23.869,92.862)
O2': (-13.214,-24.500,94.118)
N1: (-11.319,-22.035,93.350)
N3: (-9.705,-20.564,94.072)
N4: (-10.304,-18.626,95.166)
C6: (-12.275,-21.185,93.797)
C5: (-12.013,-20.049,94.422)
O3': (-12.208,-25.889,91.878)
C4: (-10.104,-23.188,96.302)
N3: (-9.091,-22.364,96.717)
OP1: (-16.665,-20.854,99.233)
OP2: (-15.534,-22.608,97.761)
C2: (-9.245,-21.329,97.568)
C1': (-10.593,-19.994,98.993)
C3': (-12.371,-18.539,98.449)
O5': (-14.211,-20.799,98.912)
O4': (-11.656,-20.246,99.870)
C5': (-14.004,-19.814,99.913)
P: (-15.498,-21.703,98.942)
C4': (-12.649,-19.202,99.778)
C2': (-10.852,-18.665,98.324)
O2': (-10.212,-17.686,99.105)
N1: (-10.494,-21.100,98.042)
O4: (-9.809,-24.074,95.516)
O2: (-8.336,-20.640,97.880)
C6: (-11.545,-21.915,97.697)
C5: (-11.399,-22.925,96.841)
O3': (-12.843,-17.198,98.414)
N3: (-9.091,-22.364,96.717)
OP1: (-16.665,-20.854,99.233)
OP2: (-15.534,-22.608,97.761)
C2: (-9.245,-21.329,97.568)
C1': (-10.593,-19.994,98.993)
C3': (-12.371,-18.539,98.449)
O5': (-14.211,-20.799,98.912)
O4': (-11.656,-20.246,99.870)
C5': (-14.004,-19.814,99.913)
P: (-15.498,-21.703,98.942)
C4': (-12.649,-19.202,99.778)
C2': (-10.852,-18.665,98.324)
O2': (-10.212,-17.686,99.105)
N1: (-10.494,-21.100,98.042)
O4: (-9.809,-24.074,95.516)
O2: (-8.336,-20.640,97.880)
C6: (-11.545,-21.915,97.697)
C5: (-11.399,-22.925,96.841)
O3': (-12.843,-17.198,98.414)
Image (generated by PyMOL):