Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02334:02333
Extra
PDB:
ATOM 1 O3' U A2333 58.636 99.874 116.124 1.00 38.45 O
ATOM 2 P C A2334 58.555 99.990 117.727 1.00 40.08 P
ATOM 3 OP1 C A2334 58.110 98.660 118.222 1.00 37.35 O
ATOM 4 OP2 C A2334 57.788 101.210 118.093 1.00 36.65 O
ATOM 5 O5' C A2334 60.068 100.200 118.172 1.00 40.18 O
ATOM 6 C5' C A2334 61.093 99.287 117.743 1.00 39.61 C
ATOM 7 C4' C A2334 62.453 99.844 118.074 1.00 41.28 C
ATOM 8 O4' C A2334 62.729 100.999 117.221 1.00 42.75 O
ATOM 9 C3' C A2334 62.607 100.335 119.518 1.00 41.73 C
ATOM 10 O3' C A2334 63.924 100.055 119.973 1.00 43.55 O
ATOM 11 C2' C A2334 62.468 101.845 119.357 1.00 41.92 C
ATOM 12 O2' C A2334 63.048 102.627 120.386 1.00 40.14 O
ATOM 13 C1' C A2334 63.201 102.043 118.033 1.00 41.66 C
ATOM 14 N1 C A2334 63.016 103.351 117.377 1.00 41.89 N
ATOM 15 C2 C A2334 61.732 103.951 117.322 1.00 42.94 C
ATOM 16 O2 C A2334 60.725 103.285 117.639 1.00 41.11 O
ATOM 17 N3 C A2334 61.634 105.242 116.912 1.00 42.44 N
ATOM 18 C4 C A2334 62.733 105.909 116.537 1.00 42.47 C
ATOM 19 N4 C A2334 62.613 107.207 116.244 1.00 42.59 N
ATOM 20 C5 C A2334 64.012 105.283 116.471 1.00 41.81 C
ATOM 21 C6 C A2334 64.105 104.017 116.892 1.00 41.76 C
ATOM 22 P G A2335 64.258 98.633 120.640 1.00 44.37 P
ATOM 23 OP1 G A2335 63.281 97.637 120.131 1.00 43.77 O
ATOM 24 OP2 G A2335 64.411 98.835 122.109 1.00 44.16 O
ATOM 25 O5' G A2335 65.689 98.292 120.030 1.00 45.43 O
TER
ATOM 1 O3' G B2332 54.748 103.784 113.476 1.00 40.29 O
ATOM 2 P U B2333 55.292 103.777 114.990 1.00 40.24 P
ATOM 3 OP1 U B2333 54.248 103.102 115.800 1.00 38.53 O
ATOM 4 OP2 U B2333 55.727 105.148 115.356 1.00 39.50 O
ATOM 5 O5' U B2333 56.598 102.864 114.919 1.00 37.98 O
ATOM 6 C5' U B2333 56.550 101.548 114.343 1.00 36.36 C
ATOM 7 C4' U B2333 57.947 101.022 114.122 1.00 38.68 C
ATOM 8 O4' U B2333 58.632 101.836 113.135 1.00 38.50 O
ATOM 9 C3' U B2333 58.867 101.037 115.331 1.00 37.78 C
ATOM 10 O3' U B2333 58.636 99.874 116.124 1.00 38.45 O
ATOM 11 C2' U B2333 60.247 101.025 114.683 1.00 37.00 C
ATOM 12 O2' U B2333 60.614 99.735 114.233 1.00 38.42 O
ATOM 13 C1' U B2333 60.011 101.893 113.444 1.00 36.30 C
ATOM 14 N1 U B2333 60.400 103.305 113.568 1.00 36.08 N
ATOM 15 C2 U B2333 61.738 103.641 113.342 1.00 37.20 C
ATOM 16 O2 U B2333 62.618 102.812 113.135 1.00 36.04 O
ATOM 17 N3 U B2333 62.009 104.986 113.388 1.00 35.24 N
ATOM 18 C4 U B2333 61.118 106.002 113.658 1.00 35.20 C
ATOM 19 O4 U B2333 61.503 107.165 113.598 1.00 35.80 O
ATOM 20 C5 U B2333 59.775 105.573 113.928 1.00 35.57 C
ATOM 21 C6 U B2333 59.470 104.275 113.873 1.00 34.57 C
ATOM 22 P C B2334 58.555 99.990 117.727 1.00 40.08 P
ATOM 23 OP1 C B2334 58.110 98.660 118.222 1.00 37.35 O
ATOM 24 OP2 C B2334 57.788 101.210 118.093 1.00 36.65 O
ATOM 25 O5' C B2334 60.068 100.200 118.172 1.00 40.18 O
TER
ATOM 2 P C A2334 58.555 99.990 117.727 1.00 40.08 P
ATOM 3 OP1 C A2334 58.110 98.660 118.222 1.00 37.35 O
ATOM 4 OP2 C A2334 57.788 101.210 118.093 1.00 36.65 O
ATOM 5 O5' C A2334 60.068 100.200 118.172 1.00 40.18 O
ATOM 6 C5' C A2334 61.093 99.287 117.743 1.00 39.61 C
ATOM 7 C4' C A2334 62.453 99.844 118.074 1.00 41.28 C
ATOM 8 O4' C A2334 62.729 100.999 117.221 1.00 42.75 O
ATOM 9 C3' C A2334 62.607 100.335 119.518 1.00 41.73 C
ATOM 10 O3' C A2334 63.924 100.055 119.973 1.00 43.55 O
ATOM 11 C2' C A2334 62.468 101.845 119.357 1.00 41.92 C
ATOM 12 O2' C A2334 63.048 102.627 120.386 1.00 40.14 O
ATOM 13 C1' C A2334 63.201 102.043 118.033 1.00 41.66 C
ATOM 14 N1 C A2334 63.016 103.351 117.377 1.00 41.89 N
ATOM 15 C2 C A2334 61.732 103.951 117.322 1.00 42.94 C
ATOM 16 O2 C A2334 60.725 103.285 117.639 1.00 41.11 O
ATOM 17 N3 C A2334 61.634 105.242 116.912 1.00 42.44 N
ATOM 18 C4 C A2334 62.733 105.909 116.537 1.00 42.47 C
ATOM 19 N4 C A2334 62.613 107.207 116.244 1.00 42.59 N
ATOM 20 C5 C A2334 64.012 105.283 116.471 1.00 41.81 C
ATOM 21 C6 C A2334 64.105 104.017 116.892 1.00 41.76 C
ATOM 22 P G A2335 64.258 98.633 120.640 1.00 44.37 P
ATOM 23 OP1 G A2335 63.281 97.637 120.131 1.00 43.77 O
ATOM 24 OP2 G A2335 64.411 98.835 122.109 1.00 44.16 O
ATOM 25 O5' G A2335 65.689 98.292 120.030 1.00 45.43 O
TER
ATOM 1 O3' G B2332 54.748 103.784 113.476 1.00 40.29 O
ATOM 2 P U B2333 55.292 103.777 114.990 1.00 40.24 P
ATOM 3 OP1 U B2333 54.248 103.102 115.800 1.00 38.53 O
ATOM 4 OP2 U B2333 55.727 105.148 115.356 1.00 39.50 O
ATOM 5 O5' U B2333 56.598 102.864 114.919 1.00 37.98 O
ATOM 6 C5' U B2333 56.550 101.548 114.343 1.00 36.36 C
ATOM 7 C4' U B2333 57.947 101.022 114.122 1.00 38.68 C
ATOM 8 O4' U B2333 58.632 101.836 113.135 1.00 38.50 O
ATOM 9 C3' U B2333 58.867 101.037 115.331 1.00 37.78 C
ATOM 10 O3' U B2333 58.636 99.874 116.124 1.00 38.45 O
ATOM 11 C2' U B2333 60.247 101.025 114.683 1.00 37.00 C
ATOM 12 O2' U B2333 60.614 99.735 114.233 1.00 38.42 O
ATOM 13 C1' U B2333 60.011 101.893 113.444 1.00 36.30 C
ATOM 14 N1 U B2333 60.400 103.305 113.568 1.00 36.08 N
ATOM 15 C2 U B2333 61.738 103.641 113.342 1.00 37.20 C
ATOM 16 O2 U B2333 62.618 102.812 113.135 1.00 36.04 O
ATOM 17 N3 U B2333 62.009 104.986 113.388 1.00 35.24 N
ATOM 18 C4 U B2333 61.118 106.002 113.658 1.00 35.20 C
ATOM 19 O4 U B2333 61.503 107.165 113.598 1.00 35.80 O
ATOM 20 C5 U B2333 59.775 105.573 113.928 1.00 35.57 C
ATOM 21 C6 U B2333 59.470 104.275 113.873 1.00 34.57 C
ATOM 22 P C B2334 58.555 99.990 117.727 1.00 40.08 P
ATOM 23 OP1 C B2334 58.110 98.660 118.222 1.00 37.35 O
ATOM 24 OP2 C B2334 57.788 101.210 118.093 1.00 36.65 O
ATOM 25 O5' C B2334 60.068 100.200 118.172 1.00 40.18 O
TER
Atoms:
C2: (61.732,103.951,117.322)
OP1: (58.110,98.660,118.222)
OP2: (57.788,101.210,118.093)
C4: (62.733,105.909,116.537)
O5': (60.068,100.200,118.172)
C3': (62.607,100.335,119.518)
C1': (63.201,102.043,118.033)
O4': (62.729,100.999,117.221)
C5': (61.093,99.287,117.743)
P: (58.555,99.990,117.727)
O2: (60.725,103.285,117.639)
C4': (62.453,99.844,118.074)
C2': (62.468,101.845,119.357)
O2': (63.048,102.627,120.386)
N1: (63.016,103.351,117.377)
N3: (61.634,105.242,116.912)
N4: (62.613,107.207,116.244)
C6: (64.105,104.017,116.892)
C5: (64.012,105.283,116.471)
O3': (63.924,100.055,119.973)
OP1: (58.110,98.660,118.222)
OP2: (57.788,101.210,118.093)
C4: (62.733,105.909,116.537)
O5': (60.068,100.200,118.172)
C3': (62.607,100.335,119.518)
C1': (63.201,102.043,118.033)
O4': (62.729,100.999,117.221)
C5': (61.093,99.287,117.743)
P: (58.555,99.990,117.727)
O2: (60.725,103.285,117.639)
C4': (62.453,99.844,118.074)
C2': (62.468,101.845,119.357)
O2': (63.048,102.627,120.386)
N1: (63.016,103.351,117.377)
N3: (61.634,105.242,116.912)
N4: (62.613,107.207,116.244)
C6: (64.105,104.017,116.892)
C5: (64.012,105.283,116.471)
O3': (63.924,100.055,119.973)
C4: (61.118,106.002,113.658)
N3: (62.009,104.986,113.388)
OP1: (54.248,103.102,115.800)
OP2: (55.727,105.148,115.356)
C2: (61.738,103.641,113.342)
C1': (60.011,101.893,113.444)
C3': (58.867,101.037,115.331)
O5': (56.598,102.864,114.919)
O4': (58.632,101.836,113.135)
C5': (56.550,101.548,114.343)
P: (55.292,103.777,114.990)
C4': (57.947,101.022,114.122)
C2': (60.247,101.025,114.683)
O2': (60.614,99.735,114.233)
N1: (60.400,103.305,113.568)
O4: (61.503,107.165,113.598)
O2: (62.618,102.812,113.135)
C6: (59.470,104.275,113.873)
C5: (59.775,105.573,113.928)
O3': (58.636,99.874,116.124)
N3: (62.009,104.986,113.388)
OP1: (54.248,103.102,115.800)
OP2: (55.727,105.148,115.356)
C2: (61.738,103.641,113.342)
C1': (60.011,101.893,113.444)
C3': (58.867,101.037,115.331)
O5': (56.598,102.864,114.919)
O4': (58.632,101.836,113.135)
C5': (56.550,101.548,114.343)
P: (55.292,103.777,114.990)
C4': (57.947,101.022,114.122)
C2': (60.247,101.025,114.683)
O2': (60.614,99.735,114.233)
N1: (60.400,103.305,113.568)
O4: (61.503,107.165,113.598)
O2: (62.618,102.812,113.135)
C6: (59.470,104.275,113.873)
C5: (59.775,105.573,113.928)
O3': (58.636,99.874,116.124)
Image (generated by PyMOL):