Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X17:X18
Extra
PDB:
ATOM 1 O3' U A 16 7.256 -11.584 19.214 1.00 37.86 O
ATOM 2 P C A 17 7.143 -10.655 20.514 1.00 37.80 P
ATOM 3 OP1 C A 17 8.318 -10.929 21.370 1.00 38.32 O
ATOM 4 OP2 C A 17 5.779 -10.802 21.069 1.00 38.42 O
ATOM 5 O5' C A 17 7.265 -9.173 19.924 1.00 37.40 O
ATOM 6 C5' C A 17 8.421 -8.779 19.194 1.00 36.40 C
ATOM 7 C4' C A 17 8.175 -7.457 18.491 1.00 35.52 C
ATOM 8 O4' C A 17 7.116 -7.612 17.512 1.00 35.02 O
ATOM 9 C3' C A 17 7.681 -6.341 19.397 1.00 35.92 C
ATOM 10 O3' C A 17 8.776 -5.714 20.051 1.00 37.01 O
ATOM 11 C2' C A 17 6.999 -5.421 18.392 1.00 35.15 C
ATOM 12 O2' C A 17 7.921 -4.633 17.666 1.00 35.07 O
ATOM 13 C1' C A 17 6.335 -6.431 17.459 1.00 34.44 C
ATOM 14 N1 C A 17 4.916 -6.743 17.829 1.00 33.89 N
ATOM 15 C2 C A 17 3.897 -5.872 17.428 1.00 33.66 C
ATOM 16 O2 C A 17 4.191 -4.866 16.771 1.00 34.31 O
ATOM 17 N3 C A 17 2.613 -6.158 17.767 1.00 33.44 N
ATOM 18 C4 C A 17 2.337 -7.255 18.476 1.00 32.99 C
ATOM 19 N4 C A 17 1.059 -7.497 18.786 1.00 33.12 N
ATOM 20 C5 C A 17 3.362 -8.154 18.892 1.00 33.44 C
ATOM 21 C6 C A 17 4.623 -7.862 18.552 1.00 33.38 C
ATOM 22 P U A 18 8.558 -5.012 21.472 1.00 38.16 P
ATOM 23 OP1 U A 18 7.651 -3.858 21.278 1.00 38.58 O
ATOM 24 OP2 U A 18 9.888 -4.811 22.086 1.00 38.98 O
ATOM 25 O5' U A 18 7.794 -6.127 22.325 1.00 38.15 O
TER
ATOM 1 O3' C B 17 8.776 -5.714 20.051 1.00 37.01 O
ATOM 2 P U B 18 8.558 -5.012 21.472 1.00 38.16 P
ATOM 3 OP1 U B 18 7.651 -3.858 21.278 1.00 38.58 O
ATOM 4 OP2 U B 18 9.888 -4.811 22.086 1.00 38.98 O
ATOM 5 O5' U B 18 7.794 -6.127 22.325 1.00 38.15 O
ATOM 6 C5' U B 18 7.670 -5.968 23.732 1.00 38.07 C
ATOM 7 C4' U B 18 6.280 -6.350 24.211 1.00 37.93 C
ATOM 8 O4' U B 18 5.282 -5.454 23.657 1.00 37.65 O
ATOM 9 C3' U B 18 5.812 -7.749 23.826 1.00 37.90 C
ATOM 10 O3' U B 18 4.972 -8.226 24.861 1.00 38.03 O
ATOM 11 C2' U B 18 4.990 -7.480 22.570 1.00 37.53 C
ATOM 12 O2' U B 18 4.074 -8.522 22.297 1.00 36.85 O
ATOM 13 C1' U B 18 4.265 -6.238 23.065 1.00 37.51 C
ATOM 14 N1 U B 18 3.558 -5.409 22.050 1.00 37.79 N
ATOM 15 C2 U B 18 2.193 -5.550 21.906 1.00 37.83 C
ATOM 16 O2 U B 18 1.531 -6.352 22.542 1.00 38.23 O
ATOM 17 N3 U B 18 1.626 -4.721 20.970 1.00 37.22 N
ATOM 18 C4 U B 18 2.271 -3.777 20.194 1.00 36.70 C
ATOM 19 O4 U B 18 1.624 -3.105 19.401 1.00 36.14 O
ATOM 20 C5 U B 18 3.691 -3.677 20.412 1.00 37.07 C
ATOM 21 C6 U B 18 4.267 -4.475 21.318 1.00 37.62 C
ATOM 22 P G B 19 5.517 -9.274 25.938 1.00 38.90 P
ATOM 23 OP1 G B 19 6.876 -8.862 26.352 1.00 38.39 O
ATOM 24 OP2 G B 19 5.280 -10.632 25.390 1.00 39.27 O
ATOM 25 O5' G B 19 4.510 -9.055 27.161 1.00 37.67 O
TER
ATOM 2 P C A 17 7.143 -10.655 20.514 1.00 37.80 P
ATOM 3 OP1 C A 17 8.318 -10.929 21.370 1.00 38.32 O
ATOM 4 OP2 C A 17 5.779 -10.802 21.069 1.00 38.42 O
ATOM 5 O5' C A 17 7.265 -9.173 19.924 1.00 37.40 O
ATOM 6 C5' C A 17 8.421 -8.779 19.194 1.00 36.40 C
ATOM 7 C4' C A 17 8.175 -7.457 18.491 1.00 35.52 C
ATOM 8 O4' C A 17 7.116 -7.612 17.512 1.00 35.02 O
ATOM 9 C3' C A 17 7.681 -6.341 19.397 1.00 35.92 C
ATOM 10 O3' C A 17 8.776 -5.714 20.051 1.00 37.01 O
ATOM 11 C2' C A 17 6.999 -5.421 18.392 1.00 35.15 C
ATOM 12 O2' C A 17 7.921 -4.633 17.666 1.00 35.07 O
ATOM 13 C1' C A 17 6.335 -6.431 17.459 1.00 34.44 C
ATOM 14 N1 C A 17 4.916 -6.743 17.829 1.00 33.89 N
ATOM 15 C2 C A 17 3.897 -5.872 17.428 1.00 33.66 C
ATOM 16 O2 C A 17 4.191 -4.866 16.771 1.00 34.31 O
ATOM 17 N3 C A 17 2.613 -6.158 17.767 1.00 33.44 N
ATOM 18 C4 C A 17 2.337 -7.255 18.476 1.00 32.99 C
ATOM 19 N4 C A 17 1.059 -7.497 18.786 1.00 33.12 N
ATOM 20 C5 C A 17 3.362 -8.154 18.892 1.00 33.44 C
ATOM 21 C6 C A 17 4.623 -7.862 18.552 1.00 33.38 C
ATOM 22 P U A 18 8.558 -5.012 21.472 1.00 38.16 P
ATOM 23 OP1 U A 18 7.651 -3.858 21.278 1.00 38.58 O
ATOM 24 OP2 U A 18 9.888 -4.811 22.086 1.00 38.98 O
ATOM 25 O5' U A 18 7.794 -6.127 22.325 1.00 38.15 O
TER
ATOM 1 O3' C B 17 8.776 -5.714 20.051 1.00 37.01 O
ATOM 2 P U B 18 8.558 -5.012 21.472 1.00 38.16 P
ATOM 3 OP1 U B 18 7.651 -3.858 21.278 1.00 38.58 O
ATOM 4 OP2 U B 18 9.888 -4.811 22.086 1.00 38.98 O
ATOM 5 O5' U B 18 7.794 -6.127 22.325 1.00 38.15 O
ATOM 6 C5' U B 18 7.670 -5.968 23.732 1.00 38.07 C
ATOM 7 C4' U B 18 6.280 -6.350 24.211 1.00 37.93 C
ATOM 8 O4' U B 18 5.282 -5.454 23.657 1.00 37.65 O
ATOM 9 C3' U B 18 5.812 -7.749 23.826 1.00 37.90 C
ATOM 10 O3' U B 18 4.972 -8.226 24.861 1.00 38.03 O
ATOM 11 C2' U B 18 4.990 -7.480 22.570 1.00 37.53 C
ATOM 12 O2' U B 18 4.074 -8.522 22.297 1.00 36.85 O
ATOM 13 C1' U B 18 4.265 -6.238 23.065 1.00 37.51 C
ATOM 14 N1 U B 18 3.558 -5.409 22.050 1.00 37.79 N
ATOM 15 C2 U B 18 2.193 -5.550 21.906 1.00 37.83 C
ATOM 16 O2 U B 18 1.531 -6.352 22.542 1.00 38.23 O
ATOM 17 N3 U B 18 1.626 -4.721 20.970 1.00 37.22 N
ATOM 18 C4 U B 18 2.271 -3.777 20.194 1.00 36.70 C
ATOM 19 O4 U B 18 1.624 -3.105 19.401 1.00 36.14 O
ATOM 20 C5 U B 18 3.691 -3.677 20.412 1.00 37.07 C
ATOM 21 C6 U B 18 4.267 -4.475 21.318 1.00 37.62 C
ATOM 22 P G B 19 5.517 -9.274 25.938 1.00 38.90 P
ATOM 23 OP1 G B 19 6.876 -8.862 26.352 1.00 38.39 O
ATOM 24 OP2 G B 19 5.280 -10.632 25.390 1.00 39.27 O
ATOM 25 O5' G B 19 4.510 -9.055 27.161 1.00 37.67 O
TER
Atoms:
C2: (3.897,-5.872,17.428)
OP1: (8.318,-10.929,21.370)
OP2: (5.779,-10.802,21.069)
C4: (2.337,-7.255,18.476)
O5': (7.265,-9.173,19.924)
C3': (7.681,-6.341,19.397)
C1': (6.335,-6.431,17.459)
O4': (7.116,-7.612,17.512)
C5': (8.421,-8.779,19.194)
P: (7.143,-10.655,20.514)
O2: (4.191,-4.866,16.771)
C4': (8.175,-7.457,18.491)
C2': (6.999,-5.421,18.392)
O2': (7.921,-4.633,17.666)
N1: (4.916,-6.743,17.829)
N3: (2.613,-6.158,17.767)
N4: (1.059,-7.497,18.786)
C6: (4.623,-7.862,18.552)
C5: (3.362,-8.154,18.892)
O3': (8.776,-5.714,20.051)
OP1: (8.318,-10.929,21.370)
OP2: (5.779,-10.802,21.069)
C4: (2.337,-7.255,18.476)
O5': (7.265,-9.173,19.924)
C3': (7.681,-6.341,19.397)
C1': (6.335,-6.431,17.459)
O4': (7.116,-7.612,17.512)
C5': (8.421,-8.779,19.194)
P: (7.143,-10.655,20.514)
O2: (4.191,-4.866,16.771)
C4': (8.175,-7.457,18.491)
C2': (6.999,-5.421,18.392)
O2': (7.921,-4.633,17.666)
N1: (4.916,-6.743,17.829)
N3: (2.613,-6.158,17.767)
N4: (1.059,-7.497,18.786)
C6: (4.623,-7.862,18.552)
C5: (3.362,-8.154,18.892)
O3': (8.776,-5.714,20.051)
C4: (2.271,-3.777,20.194)
N3: (1.626,-4.721,20.970)
OP1: (7.651,-3.858,21.278)
OP2: (9.888,-4.811,22.086)
C2: (2.193,-5.550,21.906)
C1': (4.265,-6.238,23.065)
C3': (5.812,-7.749,23.826)
O5': (7.794,-6.127,22.325)
O4': (5.282,-5.454,23.657)
C5': (7.670,-5.968,23.732)
P: (8.558,-5.012,21.472)
C4': (6.280,-6.350,24.211)
C2': (4.990,-7.480,22.570)
O2': (4.074,-8.522,22.297)
N1: (3.558,-5.409,22.050)
O4: (1.624,-3.105,19.401)
O2: (1.531,-6.352,22.542)
C6: (4.267,-4.475,21.318)
C5: (3.691,-3.677,20.412)
O3': (4.972,-8.226,24.861)
N3: (1.626,-4.721,20.970)
OP1: (7.651,-3.858,21.278)
OP2: (9.888,-4.811,22.086)
C2: (2.193,-5.550,21.906)
C1': (4.265,-6.238,23.065)
C3': (5.812,-7.749,23.826)
O5': (7.794,-6.127,22.325)
O4': (5.282,-5.454,23.657)
C5': (7.670,-5.968,23.732)
P: (8.558,-5.012,21.472)
C4': (6.280,-6.350,24.211)
C2': (4.990,-7.480,22.570)
O2': (4.074,-8.522,22.297)
N1: (3.558,-5.409,22.050)
O4: (1.624,-3.105,19.401)
O2: (1.531,-6.352,22.542)
C6: (4.267,-4.475,21.318)
C5: (3.691,-3.677,20.412)
O3': (4.972,-8.226,24.861)
Image (generated by PyMOL):