Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YFG:A12:A7
Extra
PDB:
ATOM 1 O3' G A 11 -10.235 29.132 -19.334 1.00 58.83 O
ATOM 2 P C A 12 -9.257 27.851 -19.020 1.00 58.33 P
ATOM 3 OP1 C A 12 -9.769 27.123 -17.832 1.00 58.40 O
ATOM 4 OP2 C A 12 -7.881 28.324 -18.843 1.00 58.13 O
ATOM 5 O5' C A 12 -9.530 27.064 -20.413 1.00 57.75 O
ATOM 6 C5' C A 12 -8.484 27.064 -21.396 1.00 56.84 C
ATOM 7 C4' C A 12 -9.092 27.408 -22.748 1.00 56.00 C
ATOM 8 O4' C A 12 -8.671 28.708 -23.116 1.00 56.00 O
ATOM 9 C3' C A 12 -8.614 26.502 -23.881 1.00 55.27 C
ATOM 10 O3' C A 12 -9.484 25.370 -24.058 1.00 53.95 O
ATOM 11 C2' C A 12 -8.688 27.438 -25.096 1.00 55.58 C
ATOM 12 O2' C A 12 -10.087 27.438 -25.451 1.00 55.61 O
ATOM 13 C1' C A 12 -8.358 28.757 -24.523 1.00 56.00 C
ATOM 14 N1 C A 12 -7.017 29.289 -24.686 1.00 56.30 N
ATOM 15 C2 C A 12 -6.607 29.723 -25.943 1.00 56.56 C
ATOM 16 O2 C A 12 -7.380 29.624 -26.898 1.00 56.77 O
ATOM 17 N3 C A 12 -5.345 30.235 -26.065 1.00 56.70 N
ATOM 18 C4 C A 12 -4.509 30.343 -25.000 1.00 56.63 C
ATOM 19 N4 C A 12 -3.292 30.855 -25.178 1.00 57.00 N
ATOM 20 C5 C A 12 -4.930 29.910 -23.717 1.00 56.48 C
ATOM 21 C6 C A 12 -6.164 29.407 -23.621 1.00 56.47 C
ATOM 22 P A A 13 -8.853 23.902 -24.277 1.00 52.80 P
ATOM 23 OP1 A A 13 -9.643 22.907 -23.471 1.00 52.85 O
ATOM 24 OP2 A A 13 -7.420 24.060 -23.840 1.00 52.76 O
ATOM 25 O5' A A 13 -9.001 23.666 -25.861 1.00 51.16 O
TER
ATOM 1 O3' G B 6 0.671 27.083 -19.785 1.00 35.27 O
ATOM 2 P U B 7 -0.125 28.265 -20.522 1.00 36.23 P
ATOM 3 OP1 U B 7 0.461 29.575 -20.058 1.00 36.26 O
ATOM 4 OP2 U B 7 -1.564 28.019 -20.276 1.00 36.03 O
ATOM 5 O5' U B 7 0.290 28.117 -22.065 1.00 37.09 O
ATOM 6 C5' U B 7 1.524 28.797 -22.447 1.00 38.37 C
ATOM 7 C4' U B 7 1.439 29.043 -23.949 1.00 39.37 C
ATOM 8 O4' U B 7 0.978 27.891 -24.618 1.00 39.29 O
ATOM 9 C3' U B 7 0.438 30.126 -24.345 1.00 40.34 C
ATOM 10 O3' U B 7 0.989 31.436 -24.236 1.00 41.88 O
ATOM 11 C2' U B 7 0.136 29.742 -25.792 1.00 39.82 C
ATOM 12 O2' U B 7 1.291 30.146 -26.530 1.00 40.00 O
ATOM 13 C1' U B 7 0.136 28.245 -25.710 1.00 39.25 C
ATOM 14 N1 U B 7 -1.211 27.723 -25.533 1.00 38.92 N
ATOM 15 C2 U B 7 -2.092 27.891 -26.584 1.00 39.10 C
ATOM 16 O2 U B 7 -1.729 28.462 -27.608 1.00 39.59 O
ATOM 17 N3 U B 7 -3.355 27.398 -26.448 1.00 39.33 N
ATOM 18 C4 U B 7 -3.764 26.768 -25.315 1.00 39.16 C
ATOM 19 O4 U B 7 -4.964 26.345 -25.274 1.00 39.08 O
ATOM 20 C5 U B 7 -2.837 26.601 -24.250 1.00 39.16 C
ATOM 21 C6 U B 7 -1.603 27.083 -24.400 1.00 38.99 C
TER
ATOM 2 P C A 12 -9.257 27.851 -19.020 1.00 58.33 P
ATOM 3 OP1 C A 12 -9.769 27.123 -17.832 1.00 58.40 O
ATOM 4 OP2 C A 12 -7.881 28.324 -18.843 1.00 58.13 O
ATOM 5 O5' C A 12 -9.530 27.064 -20.413 1.00 57.75 O
ATOM 6 C5' C A 12 -8.484 27.064 -21.396 1.00 56.84 C
ATOM 7 C4' C A 12 -9.092 27.408 -22.748 1.00 56.00 C
ATOM 8 O4' C A 12 -8.671 28.708 -23.116 1.00 56.00 O
ATOM 9 C3' C A 12 -8.614 26.502 -23.881 1.00 55.27 C
ATOM 10 O3' C A 12 -9.484 25.370 -24.058 1.00 53.95 O
ATOM 11 C2' C A 12 -8.688 27.438 -25.096 1.00 55.58 C
ATOM 12 O2' C A 12 -10.087 27.438 -25.451 1.00 55.61 O
ATOM 13 C1' C A 12 -8.358 28.757 -24.523 1.00 56.00 C
ATOM 14 N1 C A 12 -7.017 29.289 -24.686 1.00 56.30 N
ATOM 15 C2 C A 12 -6.607 29.723 -25.943 1.00 56.56 C
ATOM 16 O2 C A 12 -7.380 29.624 -26.898 1.00 56.77 O
ATOM 17 N3 C A 12 -5.345 30.235 -26.065 1.00 56.70 N
ATOM 18 C4 C A 12 -4.509 30.343 -25.000 1.00 56.63 C
ATOM 19 N4 C A 12 -3.292 30.855 -25.178 1.00 57.00 N
ATOM 20 C5 C A 12 -4.930 29.910 -23.717 1.00 56.48 C
ATOM 21 C6 C A 12 -6.164 29.407 -23.621 1.00 56.47 C
ATOM 22 P A A 13 -8.853 23.902 -24.277 1.00 52.80 P
ATOM 23 OP1 A A 13 -9.643 22.907 -23.471 1.00 52.85 O
ATOM 24 OP2 A A 13 -7.420 24.060 -23.840 1.00 52.76 O
ATOM 25 O5' A A 13 -9.001 23.666 -25.861 1.00 51.16 O
TER
ATOM 1 O3' G B 6 0.671 27.083 -19.785 1.00 35.27 O
ATOM 2 P U B 7 -0.125 28.265 -20.522 1.00 36.23 P
ATOM 3 OP1 U B 7 0.461 29.575 -20.058 1.00 36.26 O
ATOM 4 OP2 U B 7 -1.564 28.019 -20.276 1.00 36.03 O
ATOM 5 O5' U B 7 0.290 28.117 -22.065 1.00 37.09 O
ATOM 6 C5' U B 7 1.524 28.797 -22.447 1.00 38.37 C
ATOM 7 C4' U B 7 1.439 29.043 -23.949 1.00 39.37 C
ATOM 8 O4' U B 7 0.978 27.891 -24.618 1.00 39.29 O
ATOM 9 C3' U B 7 0.438 30.126 -24.345 1.00 40.34 C
ATOM 10 O3' U B 7 0.989 31.436 -24.236 1.00 41.88 O
ATOM 11 C2' U B 7 0.136 29.742 -25.792 1.00 39.82 C
ATOM 12 O2' U B 7 1.291 30.146 -26.530 1.00 40.00 O
ATOM 13 C1' U B 7 0.136 28.245 -25.710 1.00 39.25 C
ATOM 14 N1 U B 7 -1.211 27.723 -25.533 1.00 38.92 N
ATOM 15 C2 U B 7 -2.092 27.891 -26.584 1.00 39.10 C
ATOM 16 O2 U B 7 -1.729 28.462 -27.608 1.00 39.59 O
ATOM 17 N3 U B 7 -3.355 27.398 -26.448 1.00 39.33 N
ATOM 18 C4 U B 7 -3.764 26.768 -25.315 1.00 39.16 C
ATOM 19 O4 U B 7 -4.964 26.345 -25.274 1.00 39.08 O
ATOM 20 C5 U B 7 -2.837 26.601 -24.250 1.00 39.16 C
ATOM 21 C6 U B 7 -1.603 27.083 -24.400 1.00 38.99 C
TER
Atoms:
C2: (-6.607,29.723,-25.943)
OP1: (-9.769,27.123,-17.832)
OP2: (-7.881,28.324,-18.843)
C4: (-4.509,30.343,-25.000)
O5': (-9.530,27.064,-20.413)
C3': (-8.614,26.502,-23.881)
C1': (-8.358,28.757,-24.523)
O4': (-8.671,28.708,-23.116)
C5': (-8.484,27.064,-21.396)
P: (-9.257,27.851,-19.020)
O2: (-7.380,29.624,-26.898)
C4': (-9.092,27.408,-22.748)
C2': (-8.688,27.438,-25.096)
O2': (-10.087,27.438,-25.451)
N1: (-7.017,29.289,-24.686)
N3: (-5.345,30.235,-26.065)
N4: (-3.292,30.855,-25.178)
C6: (-6.164,29.407,-23.621)
C5: (-4.930,29.910,-23.717)
O3': (-9.484,25.370,-24.058)
OP1: (-9.769,27.123,-17.832)
OP2: (-7.881,28.324,-18.843)
C4: (-4.509,30.343,-25.000)
O5': (-9.530,27.064,-20.413)
C3': (-8.614,26.502,-23.881)
C1': (-8.358,28.757,-24.523)
O4': (-8.671,28.708,-23.116)
C5': (-8.484,27.064,-21.396)
P: (-9.257,27.851,-19.020)
O2: (-7.380,29.624,-26.898)
C4': (-9.092,27.408,-22.748)
C2': (-8.688,27.438,-25.096)
O2': (-10.087,27.438,-25.451)
N1: (-7.017,29.289,-24.686)
N3: (-5.345,30.235,-26.065)
N4: (-3.292,30.855,-25.178)
C6: (-6.164,29.407,-23.621)
C5: (-4.930,29.910,-23.717)
O3': (-9.484,25.370,-24.058)
C4: (-3.764,26.768,-25.315)
N3: (-3.355,27.398,-26.448)
OP1: (0.461,29.575,-20.058)
OP2: (-1.564,28.019,-20.276)
C2: (-2.092,27.891,-26.584)
C1': (0.136,28.245,-25.710)
C3': (0.438,30.126,-24.345)
O5': (0.290,28.117,-22.065)
O4': (0.978,27.891,-24.618)
C5': (1.524,28.797,-22.447)
P: (-0.125,28.265,-20.522)
C4': (1.439,29.043,-23.949)
C2': (0.136,29.742,-25.792)
O2': (1.291,30.146,-26.530)
N1: (-1.211,27.723,-25.533)
O4: (-4.964,26.345,-25.274)
O2: (-1.729,28.462,-27.608)
C6: (-1.603,27.083,-24.400)
C5: (-2.837,26.601,-24.250)
O3': (0.989,31.436,-24.236)
N3: (-3.355,27.398,-26.448)
OP1: (0.461,29.575,-20.058)
OP2: (-1.564,28.019,-20.276)
C2: (-2.092,27.891,-26.584)
C1': (0.136,28.245,-25.710)
C3': (0.438,30.126,-24.345)
O5': (0.290,28.117,-22.065)
O4': (0.978,27.891,-24.618)
C5': (1.524,28.797,-22.447)
P: (-0.125,28.265,-20.522)
C4': (1.439,29.043,-23.949)
C2': (0.136,29.742,-25.792)
O2': (1.291,30.146,-26.530)
N1: (-1.211,27.723,-25.533)
O4: (-4.964,26.345,-25.274)
O2: (-1.729,28.462,-27.608)
C6: (-1.603,27.083,-24.400)
C5: (-2.837,26.601,-24.250)
O3': (0.989,31.436,-24.236)
Image (generated by PyMOL):