Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12368:12369
Extra
PDB:
ATOM 1 O3' G A2367 29.993 -23.909 65.926 1.00 44.18 O
ATOM 2 P C A2368 29.791 -22.880 64.698 1.00 39.63 P
ATOM 3 OP1 C A2368 31.081 -22.191 64.461 1.00 39.51 O
ATOM 4 OP2 C A2368 28.607 -22.076 65.019 1.00 39.63 O
ATOM 5 O5' C A2368 29.474 -23.845 63.468 1.00 39.76 O
ATOM 6 C5' C A2368 30.483 -24.423 62.641 1.00 39.78 C
ATOM 7 C4' C A2368 29.839 -25.140 61.479 1.00 39.93 C
ATOM 8 O4' C A2368 28.777 -25.980 61.983 1.00 40.06 O
ATOM 9 C3' C A2368 29.140 -24.253 60.460 1.00 39.93 C
ATOM 10 O3' C A2368 29.996 -23.837 59.446 1.00 39.89 O
ATOM 11 C2' C A2368 28.034 -25.126 59.918 1.00 40.11 C
ATOM 12 O2' C A2368 28.537 -25.966 58.907 1.00 40.22 O
ATOM 13 C1' C A2368 27.671 -25.979 61.104 1.00 40.16 C
ATOM 14 N1 C A2368 26.491 -25.448 61.802 1.00 40.16 N
ATOM 15 C2 C A2368 25.193 -25.711 61.336 1.00 40.30 C
ATOM 16 O2 C A2368 25.074 -26.436 60.349 1.00 40.43 O
ATOM 17 N3 C A2368 24.108 -25.205 61.951 1.00 40.31 N
ATOM 18 C4 C A2368 24.324 -24.454 63.006 1.00 40.18 C
ATOM 19 N4 C A2368 23.320 -23.935 63.668 1.00 40.19 N
ATOM 20 C5 C A2368 25.595 -24.176 63.520 1.00 40.04 C
ATOM 21 C6 C A2368 26.649 -24.674 62.892 1.00 40.03 C
ATOM 22 P U A2369 30.157 -22.299 59.106 1.00 43.71 P
ATOM 23 OP1 U A2369 31.266 -22.184 58.085 1.00 43.69 O
ATOM 24 OP2 U A2369 30.310 -21.595 60.402 1.00 43.58 O
ATOM 25 O5' U A2369 28.771 -21.923 58.440 1.00 43.80 O
TER
ATOM 1 O3' C B2368 29.996 -23.837 59.446 1.00 39.89 O
ATOM 2 P U B2369 30.157 -22.299 59.106 1.00 43.71 P
ATOM 3 OP1 U B2369 31.266 -22.184 58.085 1.00 43.69 O
ATOM 4 OP2 U B2369 30.310 -21.595 60.402 1.00 43.58 O
ATOM 5 O5' U B2369 28.771 -21.923 58.440 1.00 43.80 O
ATOM 6 C5' U B2369 28.091 -22.806 57.575 1.00 43.97 C
ATOM 7 C4' U B2369 26.607 -22.472 57.477 1.00 44.05 C
ATOM 8 O4' U B2369 25.980 -22.538 58.782 1.00 44.02 O
ATOM 9 C3' U B2369 26.274 -21.088 56.929 1.00 44.01 C
ATOM 10 O3' U B2369 25.049 -21.163 56.213 1.00 44.16 O
ATOM 11 C2' U B2369 26.034 -20.304 58.193 1.00 43.88 C
ATOM 12 O2' U B2369 25.285 -19.128 58.017 1.00 43.88 O
ATOM 13 C1' U B2369 25.276 -21.332 58.998 1.00 43.97 C
ATOM 14 N1 U B2369 25.215 -21.050 60.426 1.00 43.88 N
ATOM 15 C2 U B2369 26.435 -21.192 61.106 1.00 43.76 C
ATOM 16 O2 U B2369 27.459 -21.544 60.553 1.00 43.74 O
ATOM 17 N3 U B2369 26.541 -20.984 62.454 1.00 43.69 N
ATOM 18 C4 U B2369 25.481 -20.587 63.134 1.00 43.71 C
ATOM 19 O4 U B2369 25.763 -20.427 64.310 1.00 43.65 O
ATOM 20 C5 U B2369 24.244 -20.445 62.352 1.00 43.83 C
ATOM 21 C6 U B2369 24.092 -20.677 61.052 1.00 43.91 C
ATOM 22 P G B2370 25.040 -21.383 54.635 1.00 39.68 P
ATOM 23 OP1 G B2370 23.628 -21.646 54.245 1.00 39.86 O
ATOM 24 OP2 G B2370 26.074 -22.414 54.326 1.00 39.70 O
ATOM 25 O5' G B2370 25.494 -19.978 54.065 1.00 39.59 O
TER
ATOM 2 P C A2368 29.791 -22.880 64.698 1.00 39.63 P
ATOM 3 OP1 C A2368 31.081 -22.191 64.461 1.00 39.51 O
ATOM 4 OP2 C A2368 28.607 -22.076 65.019 1.00 39.63 O
ATOM 5 O5' C A2368 29.474 -23.845 63.468 1.00 39.76 O
ATOM 6 C5' C A2368 30.483 -24.423 62.641 1.00 39.78 C
ATOM 7 C4' C A2368 29.839 -25.140 61.479 1.00 39.93 C
ATOM 8 O4' C A2368 28.777 -25.980 61.983 1.00 40.06 O
ATOM 9 C3' C A2368 29.140 -24.253 60.460 1.00 39.93 C
ATOM 10 O3' C A2368 29.996 -23.837 59.446 1.00 39.89 O
ATOM 11 C2' C A2368 28.034 -25.126 59.918 1.00 40.11 C
ATOM 12 O2' C A2368 28.537 -25.966 58.907 1.00 40.22 O
ATOM 13 C1' C A2368 27.671 -25.979 61.104 1.00 40.16 C
ATOM 14 N1 C A2368 26.491 -25.448 61.802 1.00 40.16 N
ATOM 15 C2 C A2368 25.193 -25.711 61.336 1.00 40.30 C
ATOM 16 O2 C A2368 25.074 -26.436 60.349 1.00 40.43 O
ATOM 17 N3 C A2368 24.108 -25.205 61.951 1.00 40.31 N
ATOM 18 C4 C A2368 24.324 -24.454 63.006 1.00 40.18 C
ATOM 19 N4 C A2368 23.320 -23.935 63.668 1.00 40.19 N
ATOM 20 C5 C A2368 25.595 -24.176 63.520 1.00 40.04 C
ATOM 21 C6 C A2368 26.649 -24.674 62.892 1.00 40.03 C
ATOM 22 P U A2369 30.157 -22.299 59.106 1.00 43.71 P
ATOM 23 OP1 U A2369 31.266 -22.184 58.085 1.00 43.69 O
ATOM 24 OP2 U A2369 30.310 -21.595 60.402 1.00 43.58 O
ATOM 25 O5' U A2369 28.771 -21.923 58.440 1.00 43.80 O
TER
ATOM 1 O3' C B2368 29.996 -23.837 59.446 1.00 39.89 O
ATOM 2 P U B2369 30.157 -22.299 59.106 1.00 43.71 P
ATOM 3 OP1 U B2369 31.266 -22.184 58.085 1.00 43.69 O
ATOM 4 OP2 U B2369 30.310 -21.595 60.402 1.00 43.58 O
ATOM 5 O5' U B2369 28.771 -21.923 58.440 1.00 43.80 O
ATOM 6 C5' U B2369 28.091 -22.806 57.575 1.00 43.97 C
ATOM 7 C4' U B2369 26.607 -22.472 57.477 1.00 44.05 C
ATOM 8 O4' U B2369 25.980 -22.538 58.782 1.00 44.02 O
ATOM 9 C3' U B2369 26.274 -21.088 56.929 1.00 44.01 C
ATOM 10 O3' U B2369 25.049 -21.163 56.213 1.00 44.16 O
ATOM 11 C2' U B2369 26.034 -20.304 58.193 1.00 43.88 C
ATOM 12 O2' U B2369 25.285 -19.128 58.017 1.00 43.88 O
ATOM 13 C1' U B2369 25.276 -21.332 58.998 1.00 43.97 C
ATOM 14 N1 U B2369 25.215 -21.050 60.426 1.00 43.88 N
ATOM 15 C2 U B2369 26.435 -21.192 61.106 1.00 43.76 C
ATOM 16 O2 U B2369 27.459 -21.544 60.553 1.00 43.74 O
ATOM 17 N3 U B2369 26.541 -20.984 62.454 1.00 43.69 N
ATOM 18 C4 U B2369 25.481 -20.587 63.134 1.00 43.71 C
ATOM 19 O4 U B2369 25.763 -20.427 64.310 1.00 43.65 O
ATOM 20 C5 U B2369 24.244 -20.445 62.352 1.00 43.83 C
ATOM 21 C6 U B2369 24.092 -20.677 61.052 1.00 43.91 C
ATOM 22 P G B2370 25.040 -21.383 54.635 1.00 39.68 P
ATOM 23 OP1 G B2370 23.628 -21.646 54.245 1.00 39.86 O
ATOM 24 OP2 G B2370 26.074 -22.414 54.326 1.00 39.70 O
ATOM 25 O5' G B2370 25.494 -19.978 54.065 1.00 39.59 O
TER
Atoms:
C2: (25.193,-25.711,61.336)
OP1: (31.081,-22.191,64.461)
OP2: (28.607,-22.076,65.019)
C4: (24.324,-24.454,63.006)
O5': (29.474,-23.845,63.468)
C3': (29.140,-24.253,60.460)
C1': (27.671,-25.979,61.104)
O4': (28.777,-25.980,61.983)
C5': (30.483,-24.423,62.641)
P: (29.791,-22.880,64.698)
O2: (25.074,-26.436,60.349)
C4': (29.839,-25.140,61.479)
C2': (28.034,-25.126,59.918)
O2': (28.537,-25.966,58.907)
N1: (26.491,-25.448,61.802)
N3: (24.108,-25.205,61.951)
N4: (23.320,-23.935,63.668)
C6: (26.649,-24.674,62.892)
C5: (25.595,-24.176,63.520)
O3': (29.996,-23.837,59.446)
OP1: (31.081,-22.191,64.461)
OP2: (28.607,-22.076,65.019)
C4: (24.324,-24.454,63.006)
O5': (29.474,-23.845,63.468)
C3': (29.140,-24.253,60.460)
C1': (27.671,-25.979,61.104)
O4': (28.777,-25.980,61.983)
C5': (30.483,-24.423,62.641)
P: (29.791,-22.880,64.698)
O2: (25.074,-26.436,60.349)
C4': (29.839,-25.140,61.479)
C2': (28.034,-25.126,59.918)
O2': (28.537,-25.966,58.907)
N1: (26.491,-25.448,61.802)
N3: (24.108,-25.205,61.951)
N4: (23.320,-23.935,63.668)
C6: (26.649,-24.674,62.892)
C5: (25.595,-24.176,63.520)
O3': (29.996,-23.837,59.446)
C4: (25.481,-20.587,63.134)
N3: (26.541,-20.984,62.454)
OP1: (31.266,-22.184,58.085)
OP2: (30.310,-21.595,60.402)
C2: (26.435,-21.192,61.106)
C1': (25.276,-21.332,58.998)
C3': (26.274,-21.088,56.929)
O5': (28.771,-21.923,58.440)
O4': (25.980,-22.538,58.782)
C5': (28.091,-22.806,57.575)
P: (30.157,-22.299,59.106)
C4': (26.607,-22.472,57.477)
C2': (26.034,-20.304,58.193)
O2': (25.285,-19.128,58.017)
N1: (25.215,-21.050,60.426)
O4: (25.763,-20.427,64.310)
O2: (27.459,-21.544,60.553)
C6: (24.092,-20.677,61.052)
C5: (24.244,-20.445,62.352)
O3': (25.049,-21.163,56.213)
N3: (26.541,-20.984,62.454)
OP1: (31.266,-22.184,58.085)
OP2: (30.310,-21.595,60.402)
C2: (26.435,-21.192,61.106)
C1': (25.276,-21.332,58.998)
C3': (26.274,-21.088,56.929)
O5': (28.771,-21.923,58.440)
O4': (25.980,-22.538,58.782)
C5': (28.091,-22.806,57.575)
P: (30.157,-22.299,59.106)
C4': (26.607,-22.472,57.477)
C2': (26.034,-20.304,58.193)
O2': (25.285,-19.128,58.017)
N1: (25.215,-21.050,60.426)
O4: (25.763,-20.427,64.310)
O2: (27.459,-21.544,60.553)
C6: (24.092,-20.677,61.052)
C5: (24.244,-20.445,62.352)
O3': (25.049,-21.163,56.213)
Image (generated by PyMOL):