Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12457:12456
Extra
PDB:
ATOM 1 O3' A A2456 20.240 -69.878 40.772 1.00 53.33 O
ATOM 2 P A A2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 3 OP1 A A2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 4 OP2 A A2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 5 O5' A A2457 19.646 -68.445 42.779 1.00 47.76 O
ATOM 6 C5' A A2457 19.157 -68.232 44.092 1.00 47.49 C
ATOM 7 C4' A A2457 18.600 -66.853 44.269 1.00 47.01 C
ATOM 8 O4' A A2457 19.616 -65.895 43.938 1.00 46.62 O
ATOM 9 C3' A A2457 17.407 -66.498 43.410 1.00 47.16 C
ATOM 10 O3' A A2457 16.630 -65.515 44.097 1.00 46.78 O
ATOM 11 C2' A A2457 18.064 -65.841 42.194 1.00 47.08 C
ATOM 12 O2' A A2457 17.228 -64.943 41.492 1.00 46.98 O
ATOM 13 C1' A A2457 19.226 -65.104 42.840 1.00 46.57 C
ATOM 14 N9 A A2457 20.400 -64.967 41.980 1.00 46.56 N
ATOM 15 C8 A A2457 20.902 -65.992 41.215 1.00 47.02 C
ATOM 16 N7 A A2457 21.994 -65.691 40.564 1.00 46.93 N
ATOM 17 C5 A A2457 22.257 -64.407 40.971 1.00 46.38 C
ATOM 18 C6 A A2457 23.309 -63.551 40.641 1.00 46.05 C
ATOM 19 N6 A A2457 24.234 -63.943 39.776 1.00 46.27 N
ATOM 20 N1 A A2457 23.370 -62.305 41.187 1.00 45.51 N
ATOM 21 C2 A A2457 22.387 -61.990 42.028 1.00 45.34 C
ATOM 22 N3 A A2457 21.332 -62.736 42.405 1.00 45.62 N
ATOM 23 C4 A A2457 21.300 -63.945 41.837 1.00 46.14 C
ATOM 24 P G A2458 15.389 -65.911 45.031 1.00 51.15 P
ATOM 25 OP1 G A2458 15.416 -65.015 46.208 1.00 50.64 O
ATOM 26 OP2 G A2458 15.433 -67.326 45.247 1.00 51.62 O
ATOM 27 O5' G A2458 14.169 -65.548 44.109 1.00 51.33 O
TER
ATOM 1 O3' A B2455 16.924 -74.058 37.682 1.00 51.41 O
ATOM 2 P A B2456 18.148 -73.949 38.696 1.00 55.58 P
ATOM 3 OP1 A B2456 18.844 -75.248 38.688 1.00 56.05 O
ATOM 4 OP2 A B2456 17.601 -73.434 39.975 1.00 55.17 O
ATOM 5 O5' A B2456 19.091 -72.884 38.038 1.00 55.19 O
ATOM 6 C5' A B2456 18.658 -71.575 37.805 1.00 54.76 C
ATOM 7 C4' A B2456 19.448 -70.572 38.573 1.00 54.12 C
ATOM 8 O4' A B2456 18.952 -69.288 38.148 1.00 53.77 O
ATOM 9 C3' A B2456 19.210 -70.615 40.082 1.00 53.86 C
ATOM 10 O3' A B2456 20.240 -69.878 40.772 1.00 53.33 O
ATOM 11 C2' A B2456 17.886 -69.876 40.157 1.00 53.70 C
ATOM 12 O2' A B2456 17.526 -69.388 41.421 1.00 53.30 O
ATOM 13 C1' A B2456 18.095 -68.757 39.137 1.00 53.45 C
ATOM 14 N9 A B2456 16.844 -68.349 38.511 1.00 53.57 N
ATOM 15 C8 A B2456 15.887 -69.193 38.046 1.00 54.10 C
ATOM 16 N7 A B2456 14.797 -68.586 37.637 1.00 54.10 N
ATOM 17 C5 A B2456 15.018 -67.252 37.887 1.00 53.52 C
ATOM 18 C6 A B2456 14.230 -66.102 37.694 1.00 53.24 C
ATOM 19 N6 A B2456 13.000 -66.009 37.169 1.00 53.49 N
ATOM 20 N1 A B2456 14.796 -64.958 38.061 1.00 52.68 N
ATOM 21 C2 A B2456 16.024 -64.973 38.577 1.00 52.43 C
ATOM 22 N3 A B2456 16.846 -65.975 38.827 1.00 52.64 N
ATOM 23 C4 A B2456 16.275 -67.106 38.442 1.00 53.19 C
ATOM 24 P A B2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 25 OP1 A B2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 26 OP2 A B2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 27 O5' A B2457 19.646 -68.445 42.779 1.00 47.76 O
TER
ATOM 2 P A A2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 3 OP1 A A2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 4 OP2 A A2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 5 O5' A A2457 19.646 -68.445 42.779 1.00 47.76 O
ATOM 6 C5' A A2457 19.157 -68.232 44.092 1.00 47.49 C
ATOM 7 C4' A A2457 18.600 -66.853 44.269 1.00 47.01 C
ATOM 8 O4' A A2457 19.616 -65.895 43.938 1.00 46.62 O
ATOM 9 C3' A A2457 17.407 -66.498 43.410 1.00 47.16 C
ATOM 10 O3' A A2457 16.630 -65.515 44.097 1.00 46.78 O
ATOM 11 C2' A A2457 18.064 -65.841 42.194 1.00 47.08 C
ATOM 12 O2' A A2457 17.228 -64.943 41.492 1.00 46.98 O
ATOM 13 C1' A A2457 19.226 -65.104 42.840 1.00 46.57 C
ATOM 14 N9 A A2457 20.400 -64.967 41.980 1.00 46.56 N
ATOM 15 C8 A A2457 20.902 -65.992 41.215 1.00 47.02 C
ATOM 16 N7 A A2457 21.994 -65.691 40.564 1.00 46.93 N
ATOM 17 C5 A A2457 22.257 -64.407 40.971 1.00 46.38 C
ATOM 18 C6 A A2457 23.309 -63.551 40.641 1.00 46.05 C
ATOM 19 N6 A A2457 24.234 -63.943 39.776 1.00 46.27 N
ATOM 20 N1 A A2457 23.370 -62.305 41.187 1.00 45.51 N
ATOM 21 C2 A A2457 22.387 -61.990 42.028 1.00 45.34 C
ATOM 22 N3 A A2457 21.332 -62.736 42.405 1.00 45.62 N
ATOM 23 C4 A A2457 21.300 -63.945 41.837 1.00 46.14 C
ATOM 24 P G A2458 15.389 -65.911 45.031 1.00 51.15 P
ATOM 25 OP1 G A2458 15.416 -65.015 46.208 1.00 50.64 O
ATOM 26 OP2 G A2458 15.433 -67.326 45.247 1.00 51.62 O
ATOM 27 O5' G A2458 14.169 -65.548 44.109 1.00 51.33 O
TER
ATOM 1 O3' A B2455 16.924 -74.058 37.682 1.00 51.41 O
ATOM 2 P A B2456 18.148 -73.949 38.696 1.00 55.58 P
ATOM 3 OP1 A B2456 18.844 -75.248 38.688 1.00 56.05 O
ATOM 4 OP2 A B2456 17.601 -73.434 39.975 1.00 55.17 O
ATOM 5 O5' A B2456 19.091 -72.884 38.038 1.00 55.19 O
ATOM 6 C5' A B2456 18.658 -71.575 37.805 1.00 54.76 C
ATOM 7 C4' A B2456 19.448 -70.572 38.573 1.00 54.12 C
ATOM 8 O4' A B2456 18.952 -69.288 38.148 1.00 53.77 O
ATOM 9 C3' A B2456 19.210 -70.615 40.082 1.00 53.86 C
ATOM 10 O3' A B2456 20.240 -69.878 40.772 1.00 53.33 O
ATOM 11 C2' A B2456 17.886 -69.876 40.157 1.00 53.70 C
ATOM 12 O2' A B2456 17.526 -69.388 41.421 1.00 53.30 O
ATOM 13 C1' A B2456 18.095 -68.757 39.137 1.00 53.45 C
ATOM 14 N9 A B2456 16.844 -68.349 38.511 1.00 53.57 N
ATOM 15 C8 A B2456 15.887 -69.193 38.046 1.00 54.10 C
ATOM 16 N7 A B2456 14.797 -68.586 37.637 1.00 54.10 N
ATOM 17 C5 A B2456 15.018 -67.252 37.887 1.00 53.52 C
ATOM 18 C6 A B2456 14.230 -66.102 37.694 1.00 53.24 C
ATOM 19 N6 A B2456 13.000 -66.009 37.169 1.00 53.49 N
ATOM 20 N1 A B2456 14.796 -64.958 38.061 1.00 52.68 N
ATOM 21 C2 A B2456 16.024 -64.973 38.577 1.00 52.43 C
ATOM 22 N3 A B2456 16.846 -65.975 38.827 1.00 52.64 N
ATOM 23 C4 A B2456 16.275 -67.106 38.442 1.00 53.19 C
ATOM 24 P A B2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 25 OP1 A B2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 26 OP2 A B2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 27 O5' A B2457 19.646 -68.445 42.779 1.00 47.76 O
TER
Atoms:
OP1: (21.768,-69.769,42.741)
OP2: (19.565,-70.921,42.940)
C3': (17.407,-66.498,43.410)
C1': (19.226,-65.104,42.840)
C5': (19.157,-68.232,44.092)
O4': (19.616,-65.895,43.938)
C8: (20.902,-65.992,41.215)
O2': (17.228,-64.943,41.492)
C6: (23.309,-63.551,40.641)
C5: (22.257,-64.407,40.971)
C4: (21.300,-63.945,41.837)
P: (20.337,-69.830,42.400)
C4': (18.600,-66.853,44.269)
C2': (18.064,-65.841,42.194)
C2: (22.387,-61.990,42.028)
N1: (23.370,-62.305,41.187)
N3: (21.332,-62.736,42.405)
N6: (24.234,-63.943,39.776)
N7: (21.994,-65.691,40.564)
N9: (20.400,-64.967,41.980)
O5': (19.646,-68.445,42.779)
O3': (16.630,-65.515,44.097)
OP2: (19.565,-70.921,42.940)
C3': (17.407,-66.498,43.410)
C1': (19.226,-65.104,42.840)
C5': (19.157,-68.232,44.092)
O4': (19.616,-65.895,43.938)
C8: (20.902,-65.992,41.215)
O2': (17.228,-64.943,41.492)
C6: (23.309,-63.551,40.641)
C5: (22.257,-64.407,40.971)
C4: (21.300,-63.945,41.837)
P: (20.337,-69.830,42.400)
C4': (18.600,-66.853,44.269)
C2': (18.064,-65.841,42.194)
C2: (22.387,-61.990,42.028)
N1: (23.370,-62.305,41.187)
N3: (21.332,-62.736,42.405)
N6: (24.234,-63.943,39.776)
N7: (21.994,-65.691,40.564)
N9: (20.400,-64.967,41.980)
O5': (19.646,-68.445,42.779)
O3': (16.630,-65.515,44.097)
OP1: (18.844,-75.248,38.688)
OP2: (17.601,-73.434,39.975)
C3': (19.210,-70.615,40.082)
C1': (18.095,-68.757,39.137)
C5': (18.658,-71.575,37.805)
O4': (18.952,-69.288,38.148)
C8: (15.887,-69.193,38.046)
O2': (17.526,-69.388,41.421)
C6: (14.230,-66.102,37.694)
C5: (15.018,-67.252,37.887)
C4: (16.275,-67.106,38.442)
P: (18.148,-73.949,38.696)
C4': (19.448,-70.572,38.573)
C2': (17.886,-69.876,40.157)
C2: (16.024,-64.973,38.577)
N1: (14.796,-64.958,38.061)
N3: (16.846,-65.975,38.827)
N6: (13.000,-66.009,37.169)
N7: (14.797,-68.586,37.637)
N9: (16.844,-68.349,38.511)
O5': (19.091,-72.884,38.038)
O3': (20.240,-69.878,40.772)
OP2: (17.601,-73.434,39.975)
C3': (19.210,-70.615,40.082)
C1': (18.095,-68.757,39.137)
C5': (18.658,-71.575,37.805)
O4': (18.952,-69.288,38.148)
C8: (15.887,-69.193,38.046)
O2': (17.526,-69.388,41.421)
C6: (14.230,-66.102,37.694)
C5: (15.018,-67.252,37.887)
C4: (16.275,-67.106,38.442)
P: (18.148,-73.949,38.696)
C4': (19.448,-70.572,38.573)
C2': (17.886,-69.876,40.157)
C2: (16.024,-64.973,38.577)
N1: (14.796,-64.958,38.061)
N3: (16.846,-65.975,38.827)
N6: (13.000,-66.009,37.169)
N7: (14.797,-68.586,37.637)
N9: (16.844,-68.349,38.511)
O5': (19.091,-72.884,38.038)
O3': (20.240,-69.878,40.772)
Image (generated by PyMOL):