ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2OTJ:01239:01237

Extra

PDB:
ATOM 1 O3' U A1238 12.089 94.561 65.766 1.00100.00 O
ATOM 2 P A A1239 10.493 94.625 65.569 1.00 99.93 P
ATOM 3 OP1 A A1239 9.954 95.550 66.600 1.00 99.70 O
ATOM 4 OP2 A A1239 9.980 93.229 65.495 1.00100.22 O
ATOM 5 O5' A A1239 10.290 95.324 64.152 1.00 98.25 O
ATOM 6 C5' A A1239 10.247 96.760 64.034 1.00 95.84 C
ATOM 7 C4' A A1239 8.817 97.229 63.895 1.00 94.09 C
ATOM 8 O4' A A1239 8.199 96.536 62.777 1.00 93.89 O
ATOM 9 C3' A A1239 7.909 96.918 65.073 1.00 93.28 C
ATOM 10 O3' A A1239 8.009 97.907 66.088 1.00 92.23 O
ATOM 11 C2' A A1239 6.533 96.893 64.423 1.00 93.12 C
ATOM 12 O2' A A1239 6.020 98.189 64.179 1.00 93.20 O
ATOM 13 C1' A A1239 6.853 96.210 63.093 1.00 92.92 C
ATOM 14 N9 A A1239 6.760 94.753 63.185 1.00 91.79 N
ATOM 15 C8 A A1239 7.796 93.852 63.205 1.00 91.38 C
ATOM 16 N7 A A1239 7.412 92.607 63.324 1.00 91.35 N
ATOM 17 C5 A A1239 6.030 92.690 63.380 1.00 90.93 C
ATOM 18 C6 A A1239 5.035 91.712 63.510 1.00 90.67 C
ATOM 19 N6 A A1239 5.291 90.409 63.625 1.00 90.31 N
ATOM 20 N1 A A1239 3.749 92.125 63.523 1.00 90.89 N
ATOM 21 C2 A A1239 3.496 93.437 63.419 1.00 90.85 C
ATOM 22 N3 A A1239 4.347 94.453 63.300 1.00 90.80 N
ATOM 23 C4 A A1239 5.613 94.005 63.286 1.00 91.04 C
ATOM 24 P C A1240 7.396 97.615 67.545 1.00 91.73 P
ATOM 25 OP1 C A1240 7.609 98.815 68.391 1.00 91.09 O
ATOM 26 OP2 C A1240 7.878 96.286 68.011 1.00 90.85 O
ATOM 27 O5' C A1240 5.833 97.497 67.293 1.00 89.98 O
TER

ATOM 1 O3' C B1236 10.066 86.840 58.371 1.00 68.95 O
ATOM 2 P A B1237 10.078 86.799 59.969 1.00 70.84 P
ATOM 3 OP1 A B1237 11.248 85.985 60.372 1.00 70.22 O
ATOM 4 OP2 A B1237 8.723 86.440 60.453 1.00 71.05 O
ATOM 5 O5' A B1237 10.342 88.308 60.385 1.00 73.11 O
ATOM 6 C5' A B1237 11.613 88.934 60.136 1.00 77.18 C
ATOM 7 C4' A B1237 11.556 90.377 60.550 1.00 79.71 C
ATOM 8 O4' A B1237 10.635 91.085 59.682 1.00 79.75 O
ATOM 9 C3' A B1237 10.992 90.589 61.942 1.00 81.82 C
ATOM 10 O3' A B1237 11.991 90.408 62.931 1.00 86.15 O
ATOM 11 C2' A B1237 10.461 92.014 61.867 1.00 80.77 C
ATOM 12 O2' A B1237 11.465 92.995 62.018 1.00 81.27 O
ATOM 13 C1' A B1237 9.921 92.050 60.436 1.00 79.97 C
ATOM 14 N9 A B1237 8.506 91.706 60.376 1.00 78.98 N
ATOM 15 C8 A B1237 7.930 90.477 60.562 1.00 78.83 C
ATOM 16 N7 A B1237 6.624 90.491 60.490 1.00 78.64 N
ATOM 17 C5 A B1237 6.320 91.819 60.228 1.00 78.74 C
ATOM 18 C6 A B1237 5.100 92.496 60.057 1.00 79.02 C
ATOM 19 N6 A B1237 3.904 91.906 60.140 1.00 78.77 N
ATOM 20 N1 A B1237 5.151 93.823 59.803 1.00 79.08 N
ATOM 21 C2 A B1237 6.351 94.417 59.739 1.00 78.88 C
ATOM 22 N3 A B1237 7.561 93.890 59.894 1.00 78.61 N
ATOM 23 C4 A B1237 7.474 92.574 60.140 1.00 78.73 C
ATOM 24 P U B1238 11.611 89.722 64.333 1.00 89.58 P
ATOM 25 OP1 U B1238 11.798 88.250 64.180 1.00 88.55 O
ATOM 26 OP2 U B1238 10.292 90.257 64.771 1.00 89.53 O
ATOM 27 O5' U B1238 12.737 90.272 65.322 1.00 92.51 O
TER

Atoms:
OP1: (9.954,95.550,66.600)
OP2: (9.980,93.229,65.495)
C3': (7.909,96.918,65.073)
C1': (6.853,96.210,63.093)
C5': (10.247,96.760,64.034)
O4': (8.199,96.536,62.777)
C8: (7.796,93.852,63.205)
O2': (6.020,98.189,64.179)
C6: (5.035,91.712,63.510)
C5: (6.030,92.690,63.380)
C4: (5.613,94.005,63.286)
P: (10.493,94.625,65.569)
C4': (8.817,97.229,63.895)
C2': (6.533,96.893,64.423)
C2: (3.496,93.437,63.419)
N1: (3.749,92.125,63.523)
N3: (4.347,94.453,63.300)
N6: (5.291,90.409,63.625)
N7: (7.412,92.607,63.324)
N9: (6.760,94.753,63.185)
O5': (10.290,95.324,64.152)
O3': (8.009,97.907,66.088)
OP1: (11.248,85.985,60.372)
OP2: (8.723,86.440,60.453)
C3': (10.992,90.589,61.942)
C1': (9.921,92.050,60.436)
C5': (11.613,88.934,60.136)
O4': (10.635,91.085,59.682)
C8: (7.930,90.477,60.562)
O2': (11.465,92.995,62.018)
C6: (5.100,92.496,60.057)
C5: (6.320,91.819,60.228)
C4: (7.474,92.574,60.140)
P: (10.078,86.799,59.969)
C4': (11.556,90.377,60.550)
C2': (10.461,92.014,61.867)
C2: (6.351,94.417,59.739)
N1: (5.151,93.823,59.803)
N3: (7.561,93.890,59.894)
N6: (3.904,91.906,60.140)
N7: (6.624,90.491,60.490)
N9: (8.506,91.706,60.376)
O5': (10.342,88.308,60.385)
O3': (11.991,90.408,62.931)
Image (generated by PyMOL):
PyMOL image
show in jmol