Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0317:0315
Extra
PDB:
ATOM 1 O3' U A 316 18.987 124.752 21.566 1.00 50.64 O
ATOM 2 P A A 317 18.509 124.648 23.104 1.00 49.71 P
ATOM 3 OP1 A A 317 19.381 123.625 23.736 1.00 48.29 O
ATOM 4 OP2 A A 317 17.034 124.471 23.133 1.00 49.01 O
ATOM 5 O5' A A 317 18.803 126.085 23.743 1.00 48.44 O
ATOM 6 C5' A A 317 19.983 126.328 24.546 1.00 45.65 C
ATOM 7 C4' A A 317 19.955 127.723 25.135 1.00 44.99 C
ATOM 8 O4' A A 317 19.834 128.700 24.062 1.00 46.33 O
ATOM 9 C3' A A 317 18.819 128.035 26.108 1.00 45.49 C
ATOM 10 O3' A A 317 19.234 129.060 27.025 1.00 46.74 O
ATOM 11 C2' A A 317 17.791 128.682 25.190 1.00 45.29 C
ATOM 12 O2' A A 317 16.890 129.518 25.883 1.00 43.62 O
ATOM 13 C1' A A 317 18.706 129.516 24.298 1.00 46.82 C
ATOM 14 N9 A A 317 18.153 129.947 23.014 1.00 50.32 N
ATOM 15 C8 A A 317 17.343 129.259 22.144 1.00 50.99 C
ATOM 16 N7 A A 317 17.022 129.938 21.070 1.00 52.42 N
ATOM 17 C5 A A 317 17.663 131.156 21.240 1.00 52.54 C
ATOM 18 C6 A A 317 17.720 132.316 20.447 1.00 51.63 C
ATOM 19 N6 A A 317 17.092 132.448 19.279 1.00 50.08 N
ATOM 20 N1 A A 317 18.454 133.354 20.906 1.00 52.92 N
ATOM 21 C2 A A 317 19.079 133.228 22.083 1.00 53.27 C
ATOM 22 N3 A A 317 19.098 132.195 22.921 1.00 53.40 N
ATOM 23 C4 A A 317 18.364 131.176 22.434 1.00 53.21 C
ATOM 24 P C A 318 20.052 128.690 28.362 1.00 46.69 P
ATOM 25 OP1 C A 318 20.073 129.936 29.172 1.00 43.90 O
ATOM 26 OP2 C A 318 21.338 128.031 27.981 1.00 41.31 O
ATOM 27 O5' C A 318 19.143 127.620 29.121 1.00 45.84 O
TER
ATOM 1 O3' G B 314 10.427 131.094 20.281 1.00 49.64 O
ATOM 2 P A B 315 10.732 129.650 19.651 1.00 51.08 P
ATOM 3 OP1 A B 315 11.406 129.877 18.346 1.00 48.92 O
ATOM 4 OP2 A B 315 9.489 128.846 19.719 1.00 50.70 O
ATOM 5 O5' A B 315 11.807 128.990 20.620 1.00 52.77 O
ATOM 6 C5' A B 315 13.150 129.499 20.696 1.00 52.14 C
ATOM 7 C4' A B 315 13.918 128.753 21.753 1.00 51.43 C
ATOM 8 O4' A B 315 13.303 128.969 23.051 1.00 51.21 O
ATOM 9 C3' A B 315 13.893 127.249 21.579 1.00 50.40 C
ATOM 10 O3' A B 315 14.886 126.840 20.652 1.00 49.98 O
ATOM 11 C2' A B 315 14.165 126.749 22.991 1.00 50.57 C
ATOM 12 O2' A B 315 15.535 126.764 23.333 1.00 49.94 O
ATOM 13 C1' A B 315 13.419 127.791 23.830 1.00 51.86 C
ATOM 14 N9 A B 315 12.080 127.369 24.250 1.00 54.56 N
ATOM 15 C8 A B 315 10.869 127.670 23.681 1.00 54.10 C
ATOM 16 N7 A B 315 9.847 127.133 24.300 1.00 55.08 N
ATOM 17 C5 A B 315 10.423 126.430 25.348 1.00 56.48 C
ATOM 18 C6 A B 315 9.875 125.643 26.379 1.00 57.23 C
ATOM 19 N6 A B 315 8.567 125.419 26.532 1.00 57.00 N
ATOM 20 N1 A B 315 10.730 125.085 27.263 1.00 57.90 N
ATOM 21 C2 A B 315 12.039 125.309 27.116 1.00 56.06 C
ATOM 22 N3 A B 315 12.671 126.027 26.196 1.00 55.50 N
ATOM 23 C4 A B 315 11.797 126.568 25.330 1.00 55.70 C
ATOM 24 P U B 316 14.447 126.221 19.239 1.00 49.61 P
ATOM 25 OP1 U B 316 14.478 127.313 18.248 1.00 51.75 O
ATOM 26 OP2 U B 316 13.198 125.450 19.437 1.00 48.45 O
ATOM 27 O5' U B 316 15.631 125.219 18.886 1.00 48.66 O
TER
ATOM 2 P A A 317 18.509 124.648 23.104 1.00 49.71 P
ATOM 3 OP1 A A 317 19.381 123.625 23.736 1.00 48.29 O
ATOM 4 OP2 A A 317 17.034 124.471 23.133 1.00 49.01 O
ATOM 5 O5' A A 317 18.803 126.085 23.743 1.00 48.44 O
ATOM 6 C5' A A 317 19.983 126.328 24.546 1.00 45.65 C
ATOM 7 C4' A A 317 19.955 127.723 25.135 1.00 44.99 C
ATOM 8 O4' A A 317 19.834 128.700 24.062 1.00 46.33 O
ATOM 9 C3' A A 317 18.819 128.035 26.108 1.00 45.49 C
ATOM 10 O3' A A 317 19.234 129.060 27.025 1.00 46.74 O
ATOM 11 C2' A A 317 17.791 128.682 25.190 1.00 45.29 C
ATOM 12 O2' A A 317 16.890 129.518 25.883 1.00 43.62 O
ATOM 13 C1' A A 317 18.706 129.516 24.298 1.00 46.82 C
ATOM 14 N9 A A 317 18.153 129.947 23.014 1.00 50.32 N
ATOM 15 C8 A A 317 17.343 129.259 22.144 1.00 50.99 C
ATOM 16 N7 A A 317 17.022 129.938 21.070 1.00 52.42 N
ATOM 17 C5 A A 317 17.663 131.156 21.240 1.00 52.54 C
ATOM 18 C6 A A 317 17.720 132.316 20.447 1.00 51.63 C
ATOM 19 N6 A A 317 17.092 132.448 19.279 1.00 50.08 N
ATOM 20 N1 A A 317 18.454 133.354 20.906 1.00 52.92 N
ATOM 21 C2 A A 317 19.079 133.228 22.083 1.00 53.27 C
ATOM 22 N3 A A 317 19.098 132.195 22.921 1.00 53.40 N
ATOM 23 C4 A A 317 18.364 131.176 22.434 1.00 53.21 C
ATOM 24 P C A 318 20.052 128.690 28.362 1.00 46.69 P
ATOM 25 OP1 C A 318 20.073 129.936 29.172 1.00 43.90 O
ATOM 26 OP2 C A 318 21.338 128.031 27.981 1.00 41.31 O
ATOM 27 O5' C A 318 19.143 127.620 29.121 1.00 45.84 O
TER
ATOM 1 O3' G B 314 10.427 131.094 20.281 1.00 49.64 O
ATOM 2 P A B 315 10.732 129.650 19.651 1.00 51.08 P
ATOM 3 OP1 A B 315 11.406 129.877 18.346 1.00 48.92 O
ATOM 4 OP2 A B 315 9.489 128.846 19.719 1.00 50.70 O
ATOM 5 O5' A B 315 11.807 128.990 20.620 1.00 52.77 O
ATOM 6 C5' A B 315 13.150 129.499 20.696 1.00 52.14 C
ATOM 7 C4' A B 315 13.918 128.753 21.753 1.00 51.43 C
ATOM 8 O4' A B 315 13.303 128.969 23.051 1.00 51.21 O
ATOM 9 C3' A B 315 13.893 127.249 21.579 1.00 50.40 C
ATOM 10 O3' A B 315 14.886 126.840 20.652 1.00 49.98 O
ATOM 11 C2' A B 315 14.165 126.749 22.991 1.00 50.57 C
ATOM 12 O2' A B 315 15.535 126.764 23.333 1.00 49.94 O
ATOM 13 C1' A B 315 13.419 127.791 23.830 1.00 51.86 C
ATOM 14 N9 A B 315 12.080 127.369 24.250 1.00 54.56 N
ATOM 15 C8 A B 315 10.869 127.670 23.681 1.00 54.10 C
ATOM 16 N7 A B 315 9.847 127.133 24.300 1.00 55.08 N
ATOM 17 C5 A B 315 10.423 126.430 25.348 1.00 56.48 C
ATOM 18 C6 A B 315 9.875 125.643 26.379 1.00 57.23 C
ATOM 19 N6 A B 315 8.567 125.419 26.532 1.00 57.00 N
ATOM 20 N1 A B 315 10.730 125.085 27.263 1.00 57.90 N
ATOM 21 C2 A B 315 12.039 125.309 27.116 1.00 56.06 C
ATOM 22 N3 A B 315 12.671 126.027 26.196 1.00 55.50 N
ATOM 23 C4 A B 315 11.797 126.568 25.330 1.00 55.70 C
ATOM 24 P U B 316 14.447 126.221 19.239 1.00 49.61 P
ATOM 25 OP1 U B 316 14.478 127.313 18.248 1.00 51.75 O
ATOM 26 OP2 U B 316 13.198 125.450 19.437 1.00 48.45 O
ATOM 27 O5' U B 316 15.631 125.219 18.886 1.00 48.66 O
TER
Atoms:
OP1: (19.381,123.625,23.736)
OP2: (17.034,124.471,23.133)
C3': (18.819,128.035,26.108)
C1': (18.706,129.516,24.298)
C5': (19.983,126.328,24.546)
O4': (19.834,128.700,24.062)
C8: (17.343,129.259,22.144)
O2': (16.890,129.518,25.883)
C6: (17.720,132.316,20.447)
C5: (17.663,131.156,21.240)
C4: (18.364,131.176,22.434)
P: (18.509,124.648,23.104)
C4': (19.955,127.723,25.135)
C2': (17.791,128.682,25.190)
C2: (19.079,133.228,22.083)
N1: (18.454,133.354,20.906)
N3: (19.098,132.195,22.921)
N6: (17.092,132.448,19.279)
N7: (17.022,129.938,21.070)
N9: (18.153,129.947,23.014)
O5': (18.803,126.085,23.743)
O3': (19.234,129.060,27.025)
OP2: (17.034,124.471,23.133)
C3': (18.819,128.035,26.108)
C1': (18.706,129.516,24.298)
C5': (19.983,126.328,24.546)
O4': (19.834,128.700,24.062)
C8: (17.343,129.259,22.144)
O2': (16.890,129.518,25.883)
C6: (17.720,132.316,20.447)
C5: (17.663,131.156,21.240)
C4: (18.364,131.176,22.434)
P: (18.509,124.648,23.104)
C4': (19.955,127.723,25.135)
C2': (17.791,128.682,25.190)
C2: (19.079,133.228,22.083)
N1: (18.454,133.354,20.906)
N3: (19.098,132.195,22.921)
N6: (17.092,132.448,19.279)
N7: (17.022,129.938,21.070)
N9: (18.153,129.947,23.014)
O5': (18.803,126.085,23.743)
O3': (19.234,129.060,27.025)
OP1: (11.406,129.877,18.346)
OP2: (9.489,128.846,19.719)
C3': (13.893,127.249,21.579)
C1': (13.419,127.791,23.830)
C5': (13.150,129.499,20.696)
O4': (13.303,128.969,23.051)
C8: (10.869,127.670,23.681)
O2': (15.535,126.764,23.333)
C6: (9.875,125.643,26.379)
C5: (10.423,126.430,25.348)
C4: (11.797,126.568,25.330)
P: (10.732,129.650,19.651)
C4': (13.918,128.753,21.753)
C2': (14.165,126.749,22.991)
C2: (12.039,125.309,27.116)
N1: (10.730,125.085,27.263)
N3: (12.671,126.027,26.196)
N6: (8.567,125.419,26.532)
N7: (9.847,127.133,24.300)
N9: (12.080,127.369,24.250)
O5': (11.807,128.990,20.620)
O3': (14.886,126.840,20.652)
OP2: (9.489,128.846,19.719)
C3': (13.893,127.249,21.579)
C1': (13.419,127.791,23.830)
C5': (13.150,129.499,20.696)
O4': (13.303,128.969,23.051)
C8: (10.869,127.670,23.681)
O2': (15.535,126.764,23.333)
C6: (9.875,125.643,26.379)
C5: (10.423,126.430,25.348)
C4: (11.797,126.568,25.330)
P: (10.732,129.650,19.651)
C4': (13.918,128.753,21.753)
C2': (14.165,126.749,22.991)
C2: (12.039,125.309,27.116)
N1: (10.730,125.085,27.263)
N3: (12.671,126.027,26.196)
N6: (8.567,125.419,26.532)
N7: (9.847,127.133,24.300)
N9: (12.080,127.369,24.250)
O5': (11.807,128.990,20.620)
O3': (14.886,126.840,20.652)
Image (generated by PyMOL):