Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01239:01237
Extra
PDB:
ATOM 1 O3' U A1238 12.157 95.061 66.118 1.00104.83 O
ATOM 2 P A A1239 10.559 95.178 65.966 1.00103.73 P
ATOM 3 OP1 A A1239 10.070 96.115 67.006 1.00103.91 O
ATOM 4 OP2 A A1239 9.999 93.803 65.901 1.00104.47 O
ATOM 5 O5' A A1239 10.354 95.869 64.548 1.00100.93 O
ATOM 6 C5' A A1239 10.363 97.301 64.410 1.00 96.42 C
ATOM 7 C4' A A1239 8.960 97.798 64.168 1.00 93.54 C
ATOM 8 O4' A A1239 8.389 97.060 63.052 1.00 93.29 O
ATOM 9 C3' A A1239 7.991 97.557 65.311 1.00 91.41 C
ATOM 10 O3' A A1239 8.077 98.603 66.272 1.00 90.41 O
ATOM 11 C2' A A1239 6.648 97.513 64.593 1.00 91.34 C
ATOM 12 O2' A A1239 6.150 98.796 64.268 1.00 90.63 O
ATOM 13 C1' A A1239 7.024 96.773 63.307 1.00 90.68 C
ATOM 14 N9 A A1239 6.881 95.318 63.406 1.00 88.48 N
ATOM 15 C8 A A1239 7.885 94.381 63.449 1.00 87.67 C
ATOM 16 N7 A A1239 7.455 93.149 63.559 1.00 87.07 N
ATOM 17 C5 A A1239 6.075 93.280 63.590 1.00 86.30 C
ATOM 18 C6 A A1239 5.042 92.339 63.704 1.00 86.03 C
ATOM 19 N6 A A1239 5.246 91.026 63.821 1.00 85.92 N
ATOM 20 N1 A A1239 3.773 92.797 63.698 1.00 86.59 N
ATOM 21 C2 A A1239 3.568 94.114 63.588 1.00 86.73 C
ATOM 22 N3 A A1239 4.455 95.097 63.479 1.00 86.95 N
ATOM 23 C4 A A1239 5.706 94.608 63.487 1.00 86.86 C
ATOM 24 P C A1240 7.431 98.407 67.733 1.00 90.09 P
ATOM 25 OP1 C A1240 7.433 99.730 68.409 1.00 90.69 O
ATOM 26 OP2 C A1240 8.047 97.232 68.410 1.00 89.66 O
ATOM 27 O5' C A1240 5.912 98.056 67.440 1.00 88.03 O
TER
ATOM 1 O3' C B1236 10.294 87.265 58.636 1.00 62.50 O
ATOM 2 P A B1237 10.330 87.278 60.230 1.00 64.69 P
ATOM 3 OP1 A B1237 11.551 86.554 60.647 1.00 64.56 O
ATOM 4 OP2 A B1237 9.008 86.838 60.729 1.00 65.10 O
ATOM 5 O5' A B1237 10.501 88.819 60.585 1.00 68.43 O
ATOM 6 C5' A B1237 11.779 89.464 60.465 1.00 73.73 C
ATOM 7 C4' A B1237 11.673 90.904 60.886 1.00 76.91 C
ATOM 8 O4' A B1237 10.781 91.590 59.978 1.00 77.69 O
ATOM 9 C3' A B1237 11.069 91.136 62.260 1.00 79.77 C
ATOM 10 O3' A B1237 12.060 91.024 63.271 1.00 87.11 O
ATOM 11 C2' A B1237 10.527 92.554 62.141 1.00 78.38 C
ATOM 12 O2' A B1237 11.511 93.550 62.294 1.00 77.68 O
ATOM 13 C1' A B1237 10.042 92.564 60.690 1.00 78.47 C
ATOM 14 N9 A B1237 8.628 92.234 60.580 1.00 78.26 N
ATOM 15 C8 A B1237 8.025 91.001 60.605 1.00 77.53 C
ATOM 16 N7 A B1237 6.720 91.053 60.524 1.00 78.02 N
ATOM 17 C5 A B1237 6.448 92.410 60.430 1.00 78.98 C
ATOM 18 C6 A B1237 5.246 93.130 60.333 1.00 80.31 C
ATOM 19 N6 A B1237 4.040 92.560 60.315 1.00 81.78 N
ATOM 20 N1 A B1237 5.325 94.476 60.257 1.00 81.29 N
ATOM 21 C2 A B1237 6.537 95.049 60.282 1.00 81.38 C
ATOM 22 N3 A B1237 7.734 94.480 60.376 1.00 79.65 N
ATOM 23 C4 A B1237 7.616 93.145 60.449 1.00 78.60 C
ATOM 24 P U B1238 11.752 90.200 64.619 1.00 92.91 P
ATOM 25 OP1 U B1238 12.038 88.761 64.345 1.00 91.27 O
ATOM 26 OP2 U B1238 10.412 90.602 65.129 1.00 93.09 O
ATOM 27 O5' U B1238 12.862 90.732 65.639 1.00 97.85 O
TER
ATOM 2 P A A1239 10.559 95.178 65.966 1.00103.73 P
ATOM 3 OP1 A A1239 10.070 96.115 67.006 1.00103.91 O
ATOM 4 OP2 A A1239 9.999 93.803 65.901 1.00104.47 O
ATOM 5 O5' A A1239 10.354 95.869 64.548 1.00100.93 O
ATOM 6 C5' A A1239 10.363 97.301 64.410 1.00 96.42 C
ATOM 7 C4' A A1239 8.960 97.798 64.168 1.00 93.54 C
ATOM 8 O4' A A1239 8.389 97.060 63.052 1.00 93.29 O
ATOM 9 C3' A A1239 7.991 97.557 65.311 1.00 91.41 C
ATOM 10 O3' A A1239 8.077 98.603 66.272 1.00 90.41 O
ATOM 11 C2' A A1239 6.648 97.513 64.593 1.00 91.34 C
ATOM 12 O2' A A1239 6.150 98.796 64.268 1.00 90.63 O
ATOM 13 C1' A A1239 7.024 96.773 63.307 1.00 90.68 C
ATOM 14 N9 A A1239 6.881 95.318 63.406 1.00 88.48 N
ATOM 15 C8 A A1239 7.885 94.381 63.449 1.00 87.67 C
ATOM 16 N7 A A1239 7.455 93.149 63.559 1.00 87.07 N
ATOM 17 C5 A A1239 6.075 93.280 63.590 1.00 86.30 C
ATOM 18 C6 A A1239 5.042 92.339 63.704 1.00 86.03 C
ATOM 19 N6 A A1239 5.246 91.026 63.821 1.00 85.92 N
ATOM 20 N1 A A1239 3.773 92.797 63.698 1.00 86.59 N
ATOM 21 C2 A A1239 3.568 94.114 63.588 1.00 86.73 C
ATOM 22 N3 A A1239 4.455 95.097 63.479 1.00 86.95 N
ATOM 23 C4 A A1239 5.706 94.608 63.487 1.00 86.86 C
ATOM 24 P C A1240 7.431 98.407 67.733 1.00 90.09 P
ATOM 25 OP1 C A1240 7.433 99.730 68.409 1.00 90.69 O
ATOM 26 OP2 C A1240 8.047 97.232 68.410 1.00 89.66 O
ATOM 27 O5' C A1240 5.912 98.056 67.440 1.00 88.03 O
TER
ATOM 1 O3' C B1236 10.294 87.265 58.636 1.00 62.50 O
ATOM 2 P A B1237 10.330 87.278 60.230 1.00 64.69 P
ATOM 3 OP1 A B1237 11.551 86.554 60.647 1.00 64.56 O
ATOM 4 OP2 A B1237 9.008 86.838 60.729 1.00 65.10 O
ATOM 5 O5' A B1237 10.501 88.819 60.585 1.00 68.43 O
ATOM 6 C5' A B1237 11.779 89.464 60.465 1.00 73.73 C
ATOM 7 C4' A B1237 11.673 90.904 60.886 1.00 76.91 C
ATOM 8 O4' A B1237 10.781 91.590 59.978 1.00 77.69 O
ATOM 9 C3' A B1237 11.069 91.136 62.260 1.00 79.77 C
ATOM 10 O3' A B1237 12.060 91.024 63.271 1.00 87.11 O
ATOM 11 C2' A B1237 10.527 92.554 62.141 1.00 78.38 C
ATOM 12 O2' A B1237 11.511 93.550 62.294 1.00 77.68 O
ATOM 13 C1' A B1237 10.042 92.564 60.690 1.00 78.47 C
ATOM 14 N9 A B1237 8.628 92.234 60.580 1.00 78.26 N
ATOM 15 C8 A B1237 8.025 91.001 60.605 1.00 77.53 C
ATOM 16 N7 A B1237 6.720 91.053 60.524 1.00 78.02 N
ATOM 17 C5 A B1237 6.448 92.410 60.430 1.00 78.98 C
ATOM 18 C6 A B1237 5.246 93.130 60.333 1.00 80.31 C
ATOM 19 N6 A B1237 4.040 92.560 60.315 1.00 81.78 N
ATOM 20 N1 A B1237 5.325 94.476 60.257 1.00 81.29 N
ATOM 21 C2 A B1237 6.537 95.049 60.282 1.00 81.38 C
ATOM 22 N3 A B1237 7.734 94.480 60.376 1.00 79.65 N
ATOM 23 C4 A B1237 7.616 93.145 60.449 1.00 78.60 C
ATOM 24 P U B1238 11.752 90.200 64.619 1.00 92.91 P
ATOM 25 OP1 U B1238 12.038 88.761 64.345 1.00 91.27 O
ATOM 26 OP2 U B1238 10.412 90.602 65.129 1.00 93.09 O
ATOM 27 O5' U B1238 12.862 90.732 65.639 1.00 97.85 O
TER
Atoms:
OP1: (10.070,96.115,67.006)
OP2: (9.999,93.803,65.901)
C3': (7.991,97.557,65.311)
C1': (7.024,96.773,63.307)
C5': (10.363,97.301,64.410)
O4': (8.389,97.060,63.052)
C8: (7.885,94.381,63.449)
O2': (6.150,98.796,64.268)
C6: (5.042,92.339,63.704)
C5: (6.075,93.280,63.590)
C4: (5.706,94.608,63.487)
P: (10.559,95.178,65.966)
C4': (8.960,97.798,64.168)
C2': (6.648,97.513,64.593)
C2: (3.568,94.114,63.588)
N1: (3.773,92.797,63.698)
N3: (4.455,95.097,63.479)
N6: (5.246,91.026,63.821)
N7: (7.455,93.149,63.559)
N9: (6.881,95.318,63.406)
O5': (10.354,95.869,64.548)
O3': (8.077,98.603,66.272)
OP2: (9.999,93.803,65.901)
C3': (7.991,97.557,65.311)
C1': (7.024,96.773,63.307)
C5': (10.363,97.301,64.410)
O4': (8.389,97.060,63.052)
C8: (7.885,94.381,63.449)
O2': (6.150,98.796,64.268)
C6: (5.042,92.339,63.704)
C5: (6.075,93.280,63.590)
C4: (5.706,94.608,63.487)
P: (10.559,95.178,65.966)
C4': (8.960,97.798,64.168)
C2': (6.648,97.513,64.593)
C2: (3.568,94.114,63.588)
N1: (3.773,92.797,63.698)
N3: (4.455,95.097,63.479)
N6: (5.246,91.026,63.821)
N7: (7.455,93.149,63.559)
N9: (6.881,95.318,63.406)
O5': (10.354,95.869,64.548)
O3': (8.077,98.603,66.272)
OP1: (11.551,86.554,60.647)
OP2: (9.008,86.838,60.729)
C3': (11.069,91.136,62.260)
C1': (10.042,92.564,60.690)
C5': (11.779,89.464,60.465)
O4': (10.781,91.590,59.978)
C8: (8.025,91.001,60.605)
O2': (11.511,93.550,62.294)
C6: (5.246,93.130,60.333)
C5: (6.448,92.410,60.430)
C4: (7.616,93.145,60.449)
P: (10.330,87.278,60.230)
C4': (11.673,90.904,60.886)
C2': (10.527,92.554,62.141)
C2: (6.537,95.049,60.282)
N1: (5.325,94.476,60.257)
N3: (7.734,94.480,60.376)
N6: (4.040,92.560,60.315)
N7: (6.720,91.053,60.524)
N9: (8.628,92.234,60.580)
O5': (10.501,88.819,60.585)
O3': (12.060,91.024,63.271)
OP2: (9.008,86.838,60.729)
C3': (11.069,91.136,62.260)
C1': (10.042,92.564,60.690)
C5': (11.779,89.464,60.465)
O4': (10.781,91.590,59.978)
C8: (8.025,91.001,60.605)
O2': (11.511,93.550,62.294)
C6: (5.246,93.130,60.333)
C5: (6.448,92.410,60.430)
C4: (7.616,93.145,60.449)
P: (10.330,87.278,60.230)
C4': (11.673,90.904,60.886)
C2': (10.527,92.554,62.141)
C2: (6.537,95.049,60.282)
N1: (5.325,94.476,60.257)
N3: (7.734,94.480,60.376)
N6: (4.040,92.560,60.315)
N7: (6.720,91.053,60.524)
N9: (8.628,92.234,60.580)
O5': (10.501,88.819,60.585)
O3': (12.060,91.024,63.271)
Image (generated by PyMOL):