ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQ5:01239:01237

Extra

PDB:
ATOM 1 O3' U A1238 12.116 95.125 65.996 1.00110.45 O
ATOM 2 P A A1239 10.508 95.206 65.940 1.00110.67 P
ATOM 3 OP1 A A1239 10.082 96.154 67.002 1.00110.73 O
ATOM 4 OP2 A A1239 9.970 93.818 65.942 1.00111.17 O
ATOM 5 O5' A A1239 10.180 95.873 64.530 1.00107.64 O
ATOM 6 C5' A A1239 10.143 97.306 64.370 1.00103.60 C
ATOM 7 C4' A A1239 8.719 97.775 64.155 1.00100.85 C
ATOM 8 O4' A A1239 8.130 97.019 63.060 1.00 99.79 O
ATOM 9 C3' A A1239 7.762 97.544 65.314 1.00 99.08 C
ATOM 10 O3' A A1239 7.835 98.579 66.288 1.00 98.47 O
ATOM 11 C2' A A1239 6.411 97.520 64.615 1.00 98.51 C
ATOM 12 O2' A A1239 5.942 98.816 64.289 1.00 97.76 O
ATOM 13 C1' A A1239 6.759 96.759 63.335 1.00 97.32 C
ATOM 14 N9 A A1239 6.586 95.312 63.487 1.00 94.19 N
ATOM 15 C8 A A1239 7.565 94.364 63.657 1.00 93.39 C
ATOM 16 N7 A A1239 7.106 93.143 63.783 1.00 92.14 N
ATOM 17 C5 A A1239 5.731 93.295 63.689 1.00 91.72 C
ATOM 18 C6 A A1239 4.677 92.373 63.750 1.00 90.70 C
ATOM 19 N6 A A1239 4.852 91.063 63.935 1.00 89.56 N
ATOM 20 N1 A A1239 3.420 92.847 63.617 1.00 90.80 N
ATOM 21 C2 A A1239 3.247 94.162 63.436 1.00 91.46 C
ATOM 22 N3 A A1239 4.158 95.130 63.364 1.00 92.02 N
ATOM 23 C4 A A1239 5.396 94.624 63.500 1.00 92.56 C
ATOM 24 P C A1240 7.233 98.333 67.760 1.00 98.54 P
ATOM 25 OP1 C A1240 7.313 99.610 68.511 1.00 98.67 O
ATOM 26 OP2 C A1240 7.844 97.105 68.331 1.00 98.92 O
ATOM 27 O5' C A1240 5.693 98.028 67.512 1.00 96.68 O
TER

ATOM 1 O3' C B1236 9.872 87.365 58.580 1.00 70.81 O
ATOM 2 P A B1237 9.880 87.322 60.183 1.00 71.56 P
ATOM 3 OP1 A B1237 11.067 86.522 60.570 1.00 70.01 O
ATOM 4 OP2 A B1237 8.534 86.916 60.659 1.00 71.75 O
ATOM 5 O5' A B1237 10.094 88.843 60.602 1.00 73.75 O
ATOM 6 C5' A B1237 11.358 89.505 60.397 1.00 77.89 C
ATOM 7 C4' A B1237 11.259 90.945 60.832 1.00 81.00 C
ATOM 8 O4' A B1237 10.328 91.640 59.967 1.00 81.74 O
ATOM 9 C3' A B1237 10.705 91.154 62.232 1.00 84.04 C
ATOM 10 O3' A B1237 11.737 91.030 63.202 1.00 89.52 O
ATOM 11 C2' A B1237 10.134 92.566 62.156 1.00 83.13 C
ATOM 12 O2' A B1237 11.097 93.586 62.324 1.00 82.53 O
ATOM 13 C1' A B1237 9.606 92.600 60.719 1.00 82.48 C
ATOM 14 N9 A B1237 8.185 92.283 60.612 1.00 82.49 N
ATOM 15 C8 A B1237 7.592 91.045 60.628 1.00 82.33 C
ATOM 16 N7 A B1237 6.288 91.085 60.520 1.00 82.43 N
ATOM 17 C5 A B1237 6.001 92.439 60.426 1.00 82.58 C
ATOM 18 C6 A B1237 4.792 93.143 60.303 1.00 82.98 C
ATOM 19 N6 A B1237 3.595 92.555 60.256 1.00 82.93 N
ATOM 20 N1 A B1237 4.853 94.490 60.232 1.00 83.57 N
ATOM 21 C2 A B1237 6.055 95.078 60.290 1.00 83.63 C
ATOM 22 N3 A B1237 7.260 94.526 60.413 1.00 82.51 N
ATOM 23 C4 A B1237 7.161 93.188 60.476 1.00 82.52 C
ATOM 24 P U B1238 11.425 90.373 64.638 1.00 94.06 P
ATOM 25 OP1 U B1238 11.513 88.894 64.482 1.00 92.11 O
ATOM 26 OP2 U B1238 10.177 90.983 65.178 1.00 93.33 O
ATOM 27 O5' U B1238 12.670 90.844 65.524 1.00 98.69 O
TER

Atoms:
OP1: (10.082,96.154,67.002)
OP2: (9.970,93.818,65.942)
C3': (7.762,97.544,65.314)
C1': (6.759,96.759,63.335)
C5': (10.143,97.306,64.370)
O4': (8.130,97.019,63.060)
C8: (7.565,94.364,63.657)
O2': (5.942,98.816,64.289)
C6: (4.677,92.373,63.750)
C5: (5.731,93.295,63.689)
C4: (5.396,94.624,63.500)
P: (10.508,95.206,65.940)
C4': (8.719,97.775,64.155)
C2': (6.411,97.520,64.615)
C2: (3.247,94.162,63.436)
N1: (3.420,92.847,63.617)
N3: (4.158,95.130,63.364)
N6: (4.852,91.063,63.935)
N7: (7.106,93.143,63.783)
N9: (6.586,95.312,63.487)
O5': (10.180,95.873,64.530)
O3': (7.835,98.579,66.288)
OP1: (11.067,86.522,60.570)
OP2: (8.534,86.916,60.659)
C3': (10.705,91.154,62.232)
C1': (9.606,92.600,60.719)
C5': (11.358,89.505,60.397)
O4': (10.328,91.640,59.967)
C8: (7.592,91.045,60.628)
O2': (11.097,93.586,62.324)
C6: (4.792,93.143,60.303)
C5: (6.001,92.439,60.426)
C4: (7.161,93.188,60.476)
P: (9.880,87.322,60.183)
C4': (11.259,90.945,60.832)
C2': (10.134,92.566,62.156)
C2: (6.055,95.078,60.290)
N1: (4.853,94.490,60.232)
N3: (7.260,94.526,60.413)
N6: (3.595,92.555,60.256)
N7: (6.288,91.085,60.520)
N9: (8.185,92.283,60.612)
O5': (10.094,88.843,60.602)
O3': (11.737,91.030,63.202)
Image (generated by PyMOL):
PyMOL image
show in jmol