Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OHJ:A2039:A2038
Extra
PDB:
ATOM 1 O3' A A2038 55.397 -4.822 -67.454 1.00 51.21 O
ATOM 2 P A A2039 54.815 -5.973 -66.492 1.00 55.37 P
ATOM 3 OP1 A A2039 53.379 -5.699 -66.247 1.00 66.43 O
ATOM 4 OP2 A A2039 55.714 -6.076 -65.335 1.00 59.25 O
ATOM 5 O5' A A2039 54.974 -7.239 -67.415 1.00 47.05 O
ATOM 6 C5' A A2039 55.501 -8.422 -66.900 1.00 52.35 C
ATOM 7 C4' A A2039 56.882 -8.698 -67.416 1.00 50.01 C
ATOM 8 O4' A A2039 57.638 -7.473 -67.549 1.00 49.63 O
ATOM 9 C3' A A2039 57.723 -9.547 -66.505 1.00 54.45 C
ATOM 10 O3' A A2039 57.401 -10.903 -66.621 1.00 54.97 O
ATOM 11 C2' A A2039 59.137 -9.201 -66.913 1.00 45.62 C
ATOM 12 O2' A A2039 59.474 -9.876 -68.107 1.00 48.54 O
ATOM 13 C1' A A2039 58.989 -7.709 -67.210 1.00 44.55 C
ATOM 14 N9 A A2039 59.316 -6.870 -66.044 1.00 49.65 N
ATOM 15 C8 A A2039 58.711 -5.676 -65.724 1.00 51.26 C
ATOM 16 N7 A A2039 59.171 -5.090 -64.641 1.00 49.20 N
ATOM 17 C5 A A2039 60.163 -5.962 -64.220 1.00 49.76 C
ATOM 18 C6 A A2039 61.029 -5.906 -63.134 1.00 46.83 C
ATOM 19 N6 A A2039 61.049 -4.913 -62.257 1.00 51.31 N
ATOM 20 N1 A A2039 61.882 -6.914 -62.973 1.00 46.48 N
ATOM 21 C2 A A2039 61.856 -7.904 -63.858 1.00 50.79 C
ATOM 22 N3 A A2039 61.099 -8.082 -64.930 1.00 48.03 N
ATOM 23 C4 A A2039 60.261 -7.059 -65.064 1.00 48.98 C
ATOM 24 P C A2040 56.164 -11.483 -65.789 1.00 57.71 P
ATOM 25 OP1 C A2040 55.401 -12.338 -66.706 1.00 61.90 O
ATOM 26 OP2 C A2040 55.481 -10.337 -65.101 1.00 36.87 O
ATOM 27 O5' C A2040 56.886 -12.360 -64.699 1.00 77.58 O
TER
ATOM 1 O3' U B2037 54.770 0.906 -67.857 1.00 55.07 O
ATOM 2 P A B2038 53.249 0.372 -67.836 1.00 63.88 P
ATOM 3 OP1 A B2038 52.403 1.427 -68.438 1.00 84.75 O
ATOM 4 OP2 A B2038 52.948 -0.081 -66.458 1.00 72.84 O
ATOM 5 O5' A B2038 53.323 -0.873 -68.807 1.00 56.91 O
ATOM 6 C5' A B2038 52.976 -2.169 -68.353 1.00 54.01 C
ATOM 7 C4' A B2038 54.081 -3.174 -68.593 1.00 55.56 C
ATOM 8 O4' A B2038 55.001 -2.685 -69.626 1.00 50.40 O
ATOM 9 C3' A B2038 54.951 -3.479 -67.370 1.00 51.04 C
ATOM 10 O3' A B2038 55.397 -4.822 -67.454 1.00 51.21 O
ATOM 11 C2' A B2038 56.138 -2.573 -67.614 1.00 55.08 C
ATOM 12 O2' A B2038 57.309 -2.923 -66.911 1.00 56.35 O
ATOM 13 C1' A B2038 56.306 -2.758 -69.110 1.00 50.97 C
ATOM 14 N9 A B2038 57.155 -1.753 -69.716 1.00 50.82 N
ATOM 15 C8 A B2038 57.109 -0.401 -69.550 1.00 52.34 C
ATOM 16 N7 A B2038 58.119 0.192 -70.154 1.00 64.57 N
ATOM 17 C5 A B2038 58.900 -0.838 -70.687 1.00 52.44 C
ATOM 18 C6 A B2038 60.104 -0.857 -71.418 1.00 46.20 C
ATOM 19 N6 A B2038 60.781 0.231 -71.791 1.00 51.82 N
ATOM 20 N1 A B2038 60.593 -2.060 -71.771 1.00 52.77 N
ATOM 21 C2 A B2038 59.909 -3.153 -71.410 1.00 53.68 C
ATOM 22 N3 A B2038 58.770 -3.255 -70.733 1.00 46.19 N
ATOM 23 C4 A B2038 58.315 -2.048 -70.394 1.00 49.72 C
ATOM 24 P A B2039 54.815 -5.973 -66.492 1.00 55.37 P
ATOM 25 OP1 A B2039 53.379 -5.699 -66.247 1.00 66.43 O
ATOM 26 OP2 A B2039 55.714 -6.076 -65.335 1.00 59.25 O
ATOM 27 O5' A B2039 54.974 -7.239 -67.415 1.00 47.05 O
TER
ATOM 2 P A A2039 54.815 -5.973 -66.492 1.00 55.37 P
ATOM 3 OP1 A A2039 53.379 -5.699 -66.247 1.00 66.43 O
ATOM 4 OP2 A A2039 55.714 -6.076 -65.335 1.00 59.25 O
ATOM 5 O5' A A2039 54.974 -7.239 -67.415 1.00 47.05 O
ATOM 6 C5' A A2039 55.501 -8.422 -66.900 1.00 52.35 C
ATOM 7 C4' A A2039 56.882 -8.698 -67.416 1.00 50.01 C
ATOM 8 O4' A A2039 57.638 -7.473 -67.549 1.00 49.63 O
ATOM 9 C3' A A2039 57.723 -9.547 -66.505 1.00 54.45 C
ATOM 10 O3' A A2039 57.401 -10.903 -66.621 1.00 54.97 O
ATOM 11 C2' A A2039 59.137 -9.201 -66.913 1.00 45.62 C
ATOM 12 O2' A A2039 59.474 -9.876 -68.107 1.00 48.54 O
ATOM 13 C1' A A2039 58.989 -7.709 -67.210 1.00 44.55 C
ATOM 14 N9 A A2039 59.316 -6.870 -66.044 1.00 49.65 N
ATOM 15 C8 A A2039 58.711 -5.676 -65.724 1.00 51.26 C
ATOM 16 N7 A A2039 59.171 -5.090 -64.641 1.00 49.20 N
ATOM 17 C5 A A2039 60.163 -5.962 -64.220 1.00 49.76 C
ATOM 18 C6 A A2039 61.029 -5.906 -63.134 1.00 46.83 C
ATOM 19 N6 A A2039 61.049 -4.913 -62.257 1.00 51.31 N
ATOM 20 N1 A A2039 61.882 -6.914 -62.973 1.00 46.48 N
ATOM 21 C2 A A2039 61.856 -7.904 -63.858 1.00 50.79 C
ATOM 22 N3 A A2039 61.099 -8.082 -64.930 1.00 48.03 N
ATOM 23 C4 A A2039 60.261 -7.059 -65.064 1.00 48.98 C
ATOM 24 P C A2040 56.164 -11.483 -65.789 1.00 57.71 P
ATOM 25 OP1 C A2040 55.401 -12.338 -66.706 1.00 61.90 O
ATOM 26 OP2 C A2040 55.481 -10.337 -65.101 1.00 36.87 O
ATOM 27 O5' C A2040 56.886 -12.360 -64.699 1.00 77.58 O
TER
ATOM 1 O3' U B2037 54.770 0.906 -67.857 1.00 55.07 O
ATOM 2 P A B2038 53.249 0.372 -67.836 1.00 63.88 P
ATOM 3 OP1 A B2038 52.403 1.427 -68.438 1.00 84.75 O
ATOM 4 OP2 A B2038 52.948 -0.081 -66.458 1.00 72.84 O
ATOM 5 O5' A B2038 53.323 -0.873 -68.807 1.00 56.91 O
ATOM 6 C5' A B2038 52.976 -2.169 -68.353 1.00 54.01 C
ATOM 7 C4' A B2038 54.081 -3.174 -68.593 1.00 55.56 C
ATOM 8 O4' A B2038 55.001 -2.685 -69.626 1.00 50.40 O
ATOM 9 C3' A B2038 54.951 -3.479 -67.370 1.00 51.04 C
ATOM 10 O3' A B2038 55.397 -4.822 -67.454 1.00 51.21 O
ATOM 11 C2' A B2038 56.138 -2.573 -67.614 1.00 55.08 C
ATOM 12 O2' A B2038 57.309 -2.923 -66.911 1.00 56.35 O
ATOM 13 C1' A B2038 56.306 -2.758 -69.110 1.00 50.97 C
ATOM 14 N9 A B2038 57.155 -1.753 -69.716 1.00 50.82 N
ATOM 15 C8 A B2038 57.109 -0.401 -69.550 1.00 52.34 C
ATOM 16 N7 A B2038 58.119 0.192 -70.154 1.00 64.57 N
ATOM 17 C5 A B2038 58.900 -0.838 -70.687 1.00 52.44 C
ATOM 18 C6 A B2038 60.104 -0.857 -71.418 1.00 46.20 C
ATOM 19 N6 A B2038 60.781 0.231 -71.791 1.00 51.82 N
ATOM 20 N1 A B2038 60.593 -2.060 -71.771 1.00 52.77 N
ATOM 21 C2 A B2038 59.909 -3.153 -71.410 1.00 53.68 C
ATOM 22 N3 A B2038 58.770 -3.255 -70.733 1.00 46.19 N
ATOM 23 C4 A B2038 58.315 -2.048 -70.394 1.00 49.72 C
ATOM 24 P A B2039 54.815 -5.973 -66.492 1.00 55.37 P
ATOM 25 OP1 A B2039 53.379 -5.699 -66.247 1.00 66.43 O
ATOM 26 OP2 A B2039 55.714 -6.076 -65.335 1.00 59.25 O
ATOM 27 O5' A B2039 54.974 -7.239 -67.415 1.00 47.05 O
TER
Atoms:
OP1: (53.379,-5.699,-66.247)
OP2: (55.714,-6.076,-65.335)
C3': (57.723,-9.547,-66.505)
C1': (58.989,-7.709,-67.210)
C5': (55.501,-8.422,-66.900)
O4': (57.638,-7.473,-67.549)
C8: (58.711,-5.676,-65.724)
O2': (59.474,-9.876,-68.107)
C6: (61.029,-5.906,-63.134)
C5: (60.163,-5.962,-64.220)
C4: (60.261,-7.059,-65.064)
P: (54.815,-5.973,-66.492)
C4': (56.882,-8.698,-67.416)
C2': (59.137,-9.201,-66.913)
C2: (61.856,-7.904,-63.858)
N1: (61.882,-6.914,-62.973)
N3: (61.099,-8.082,-64.930)
N6: (61.049,-4.913,-62.257)
N7: (59.171,-5.090,-64.641)
N9: (59.316,-6.870,-66.044)
O5': (54.974,-7.239,-67.415)
O3': (57.401,-10.903,-66.621)
OP2: (55.714,-6.076,-65.335)
C3': (57.723,-9.547,-66.505)
C1': (58.989,-7.709,-67.210)
C5': (55.501,-8.422,-66.900)
O4': (57.638,-7.473,-67.549)
C8: (58.711,-5.676,-65.724)
O2': (59.474,-9.876,-68.107)
C6: (61.029,-5.906,-63.134)
C5: (60.163,-5.962,-64.220)
C4: (60.261,-7.059,-65.064)
P: (54.815,-5.973,-66.492)
C4': (56.882,-8.698,-67.416)
C2': (59.137,-9.201,-66.913)
C2: (61.856,-7.904,-63.858)
N1: (61.882,-6.914,-62.973)
N3: (61.099,-8.082,-64.930)
N6: (61.049,-4.913,-62.257)
N7: (59.171,-5.090,-64.641)
N9: (59.316,-6.870,-66.044)
O5': (54.974,-7.239,-67.415)
O3': (57.401,-10.903,-66.621)
OP1: (52.403,1.427,-68.438)
OP2: (52.948,-0.081,-66.458)
C3': (54.951,-3.479,-67.370)
C1': (56.306,-2.758,-69.110)
C5': (52.976,-2.169,-68.353)
O4': (55.001,-2.685,-69.626)
C8: (57.109,-0.401,-69.550)
O2': (57.309,-2.923,-66.911)
C6: (60.104,-0.857,-71.418)
C5: (58.900,-0.838,-70.687)
C4: (58.315,-2.048,-70.394)
P: (53.249,0.372,-67.836)
C4': (54.081,-3.174,-68.593)
C2': (56.138,-2.573,-67.614)
C2: (59.909,-3.153,-71.410)
N1: (60.593,-2.060,-71.771)
N3: (58.770,-3.255,-70.733)
N6: (60.781,0.231,-71.791)
N7: (58.119,0.192,-70.154)
N9: (57.155,-1.753,-69.716)
O5': (53.323,-0.873,-68.807)
O3': (55.397,-4.822,-67.454)
OP2: (52.948,-0.081,-66.458)
C3': (54.951,-3.479,-67.370)
C1': (56.306,-2.758,-69.110)
C5': (52.976,-2.169,-68.353)
O4': (55.001,-2.685,-69.626)
C8: (57.109,-0.401,-69.550)
O2': (57.309,-2.923,-66.911)
C6: (60.104,-0.857,-71.418)
C5: (58.900,-0.838,-70.687)
C4: (58.315,-2.048,-70.394)
P: (53.249,0.372,-67.836)
C4': (54.081,-3.174,-68.593)
C2': (56.138,-2.573,-67.614)
C2: (59.909,-3.153,-71.410)
N1: (60.593,-2.060,-71.771)
N3: (58.770,-3.255,-70.733)
N6: (60.781,0.231,-71.791)
N7: (58.119,0.192,-70.154)
N9: (57.155,-1.753,-69.716)
O5': (53.323,-0.873,-68.807)
O3': (55.397,-4.822,-67.454)
Image (generated by PyMOL):