ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:12554:12553

Extra

PDB:
ATOM 1 O3' A A2553 29.713 -36.745 79.846 1.00 38.21 O
ATOM 2 P A A2554 28.527 -37.733 80.303 1.00 42.79 P
ATOM 3 OP1 A A2554 29.128 -38.806 81.154 1.00 43.01 O
ATOM 4 OP2 A A2554 27.781 -38.114 79.077 1.00 42.80 O
ATOM 5 O5' A A2554 27.640 -36.784 81.183 1.00 42.73 O
ATOM 6 C5' A A2554 26.300 -37.088 81.454 1.00 42.87 C
ATOM 7 C4' A A2554 25.610 -35.914 82.057 1.00 42.77 C
ATOM 8 O4' A A2554 25.987 -35.802 83.450 1.00 42.85 O
ATOM 9 C3' A A2554 25.925 -34.561 81.415 1.00 42.49 C
ATOM 10 O3' A A2554 24.742 -33.806 81.346 1.00 42.44 O
ATOM 11 C2' A A2554 26.828 -33.903 82.435 1.00 42.43 C
ATOM 12 O2' A A2554 26.782 -32.502 82.413 1.00 42.23 O
ATOM 13 C1' A A2554 26.268 -34.457 83.727 1.00 42.65 C
ATOM 14 N9 A A2554 27.177 -34.392 84.860 1.00 42.71 N
ATOM 15 C8 A A2554 28.536 -34.445 84.890 1.00 42.66 C
ATOM 16 N7 A A2554 29.069 -34.379 86.107 1.00 42.76 N
ATOM 17 C5 A A2554 27.957 -34.266 86.931 1.00 42.88 C
ATOM 18 C6 A A2554 27.800 -34.137 88.335 1.00 43.04 C
ATOM 19 N6 A A2554 28.794 -34.097 89.209 1.00 43.11 N
ATOM 20 N1 A A2554 26.567 -34.047 88.845 1.00 43.15 N
ATOM 21 C2 A A2554 25.537 -34.091 87.987 1.00 43.10 C
ATOM 22 N3 A A2554 25.540 -34.183 86.653 1.00 42.96 N
ATOM 23 C4 A A2554 26.799 -34.262 86.166 1.00 42.85 C
ATOM 24 P A A2555 24.345 -32.994 80.025 1.00 48.46 P
ATOM 25 OP1 A A2555 23.351 -33.827 79.301 1.00 48.60 O
ATOM 26 OP2 A A2555 25.596 -32.582 79.312 1.00 48.28 O
ATOM 27 O5' A A2555 23.642 -31.732 80.641 1.00 48.38 O
TER

ATOM 1 O3' G B2552 31.286 -37.648 74.043 1.00 41.22 O
ATOM 2 P A B2553 32.251 -36.884 75.038 1.00 37.87 P
ATOM 3 OP1 A B2553 33.276 -36.293 74.235 1.00 37.71 O
ATOM 4 OP2 A B2553 32.650 -37.851 76.101 1.00 38.08 O
ATOM 5 O5' A B2553 31.293 -35.734 75.634 1.00 37.74 O
ATOM 6 C5' A B2553 30.225 -36.040 76.531 1.00 37.87 C
ATOM 7 C4' A B2553 30.505 -35.514 77.913 1.00 37.85 C
ATOM 8 O4' A B2553 30.761 -34.108 77.846 1.00 37.62 O
ATOM 9 C3' A B2553 29.408 -35.671 78.960 1.00 37.99 C
ATOM 10 O3' A B2553 29.713 -36.745 79.846 1.00 38.21 O
ATOM 11 C2' A B2553 29.431 -34.325 79.735 1.00 37.83 C
ATOM 12 O2' A B2553 29.587 -34.457 81.136 1.00 37.95 O
ATOM 13 C1' A B2553 30.614 -33.580 79.136 1.00 37.63 C
ATOM 14 N9 A B2553 30.406 -32.150 78.995 1.00 37.42 N
ATOM 15 C8 A B2553 29.320 -31.405 79.310 1.00 37.39 C
ATOM 16 N7 A B2553 29.457 -30.145 78.971 1.00 37.20 N
ATOM 17 C5 A B2553 30.689 -30.073 78.386 1.00 37.10 C
ATOM 18 C6 A B2553 31.371 -29.030 77.817 1.00 36.91 C
ATOM 19 N6 A B2553 30.908 -27.785 77.723 1.00 36.78 N
ATOM 20 N1 A B2553 32.570 -29.317 77.310 1.00 36.87 N
ATOM 21 C2 A B2553 33.040 -30.536 77.378 1.00 37.02 C
ATOM 22 N3 A B2553 32.514 -31.606 77.892 1.00 37.21 N
ATOM 23 C4 A B2553 31.300 -31.295 78.381 1.00 37.24 C
ATOM 24 P A B2554 28.527 -37.733 80.303 1.00 42.79 P
ATOM 25 OP1 A B2554 29.128 -38.806 81.154 1.00 43.01 O
ATOM 26 OP2 A B2554 27.781 -38.114 79.077 1.00 42.80 O
ATOM 27 O5' A B2554 27.640 -36.784 81.183 1.00 42.73 O
TER

Atoms:
OP1: (29.128,-38.806,81.154)
OP2: (27.781,-38.114,79.077)
C3': (25.925,-34.561,81.415)
C1': (26.268,-34.457,83.727)
C5': (26.300,-37.088,81.454)
O4': (25.987,-35.802,83.450)
C8: (28.536,-34.445,84.890)
O2': (26.782,-32.502,82.413)
C6: (27.800,-34.137,88.335)
C5: (27.957,-34.266,86.931)
C4: (26.799,-34.262,86.166)
P: (28.527,-37.733,80.303)
C4': (25.610,-35.914,82.057)
C2': (26.828,-33.903,82.435)
C2: (25.537,-34.091,87.987)
N1: (26.567,-34.047,88.845)
N3: (25.540,-34.183,86.653)
N6: (28.794,-34.097,89.209)
N7: (29.069,-34.379,86.107)
N9: (27.177,-34.392,84.860)
O5': (27.640,-36.784,81.183)
O3': (24.742,-33.806,81.346)
OP1: (33.276,-36.293,74.235)
OP2: (32.650,-37.851,76.101)
C3': (29.408,-35.671,78.960)
C1': (30.614,-33.580,79.136)
C5': (30.225,-36.040,76.531)
O4': (30.761,-34.108,77.846)
C8: (29.320,-31.405,79.310)
O2': (29.587,-34.457,81.136)
C6: (31.371,-29.030,77.817)
C5: (30.689,-30.073,78.386)
C4: (31.300,-31.295,78.381)
P: (32.251,-36.884,75.038)
C4': (30.505,-35.514,77.913)
C2': (29.431,-34.325,79.735)
C2: (33.040,-30.536,77.378)
N1: (32.570,-29.317,77.310)
N3: (32.514,-31.606,77.892)
N6: (30.908,-27.785,77.723)
N7: (29.457,-30.145,78.971)
N9: (30.406,-32.150,78.995)
O5': (31.293,-35.734,75.634)
O3': (29.713,-36.745,79.846)
Image (generated by PyMOL):
PyMOL image
show in jmol