Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNH:V3:V2
Extra
PDB:
ATOM 1 O3' A A 2 105.472 23.336 -3.966 1.00 90.48 O
ATOM 2 P A A 3 104.642 23.940 -2.723 1.00 84.35 P
ATOM 3 OP1 A A 3 103.224 24.129 -3.144 1.00 83.72 O
ATOM 4 OP2 A A 3 105.393 25.091 -2.169 1.00 83.11 O
ATOM 5 O5' A A 3 104.708 22.776 -1.635 1.00 80.58 O
ATOM 6 C5' A A 3 103.721 21.743 -1.588 1.00 73.75 C
ATOM 7 C4' A A 3 104.152 20.651 -0.639 1.00 68.22 C
ATOM 8 O4' A A 3 105.275 19.947 -1.225 1.00 66.49 O
ATOM 9 C3' A A 3 104.667 21.158 0.698 1.00 66.40 C
ATOM 10 O3' A A 3 103.639 21.395 1.644 1.00 64.88 O
ATOM 11 C2' A A 3 105.642 20.072 1.117 1.00 66.18 C
ATOM 12 O2' A A 3 105.021 18.956 1.711 1.00 66.25 O
ATOM 13 C1' A A 3 106.256 19.694 -0.229 1.00 66.64 C
ATOM 14 N9 A A 3 107.405 20.571 -0.481 1.00 66.32 N
ATOM 15 C8 A A 3 107.430 21.758 -1.179 1.00 66.21 C
ATOM 16 N7 A A 3 108.586 22.373 -1.139 1.00 66.05 N
ATOM 17 C5 A A 3 109.384 21.527 -0.385 1.00 66.77 C
ATOM 18 C6 A A 3 110.714 21.628 0.046 1.00 68.12 C
ATOM 19 N6 A A 3 111.498 22.685 -0.211 1.00 68.40 N
ATOM 20 N1 A A 3 111.216 20.603 0.774 1.00 67.08 N
ATOM 21 C2 A A 3 110.416 19.565 1.060 1.00 65.91 C
ATOM 22 N3 A A 3 109.144 19.368 0.731 1.00 65.56 N
ATOM 23 C4 A A 3 108.681 20.397 0.000 1.00 65.99 C
ATOM 24 P U A 4 103.803 22.603 2.702 1.00 64.18 P
ATOM 25 OP1 U A 4 102.474 22.914 3.292 1.00 62.97 O
ATOM 26 OP2 U A 4 104.585 23.687 2.040 1.00 62.40 O
ATOM 27 O5' U A 4 104.713 21.980 3.855 1.00 64.95 O
TER
ATOM 1 O3' A B 1 101.578 23.794 -9.072 1.00121.21 O
ATOM 2 P A B 2 101.617 24.290 -7.531 1.00118.27 P
ATOM 3 OP1 A B 2 100.786 23.360 -6.719 1.00118.91 O
ATOM 4 OP2 A B 2 101.283 25.739 -7.545 1.00118.16 O
ATOM 5 O5' A B 2 103.150 24.155 -7.084 1.00113.93 O
ATOM 6 C5' A B 2 103.736 22.888 -6.744 1.00107.48 C
ATOM 7 C4' A B 2 105.201 23.063 -6.371 1.00103.45 C
ATOM 8 O4' A B 2 105.906 23.619 -7.511 1.00104.70 O
ATOM 9 C3' A B 2 105.480 24.022 -5.218 1.00 99.75 C
ATOM 10 O3' A B 2 105.472 23.336 -3.966 1.00 90.48 O
ATOM 11 C2' A B 2 106.867 24.575 -5.544 1.00101.83 C
ATOM 12 O2' A B 2 107.921 23.758 -5.076 1.00102.98 O
ATOM 13 C1' A B 2 106.864 24.572 -7.076 1.00104.62 C
ATOM 14 N9 A B 2 106.539 25.864 -7.699 1.00107.21 N
ATOM 15 C8 A B 2 105.288 26.333 -8.052 1.00107.73 C
ATOM 16 N7 A B 2 105.302 27.520 -8.612 1.00108.13 N
ATOM 17 C5 A B 2 106.649 27.866 -8.627 1.00108.78 C
ATOM 18 C6 A B 2 107.328 29.015 -9.092 1.00108.77 C
ATOM 19 N6 A B 2 106.719 30.061 -9.656 1.00108.29 N
ATOM 20 N1 A B 2 108.672 29.050 -8.953 1.00108.73 N
ATOM 21 C2 A B 2 109.285 27.997 -8.387 1.00108.51 C
ATOM 22 N3 A B 2 108.762 26.862 -7.915 1.00107.87 N
ATOM 23 C4 A B 2 107.424 26.857 -8.065 1.00108.07 C
ATOM 24 P A B 3 104.642 23.940 -2.723 1.00 84.35 P
ATOM 25 OP1 A B 3 103.224 24.129 -3.144 1.00 83.72 O
ATOM 26 OP2 A B 3 105.393 25.091 -2.169 1.00 83.11 O
ATOM 27 O5' A B 3 104.708 22.776 -1.635 1.00 80.58 O
TER
ATOM 2 P A A 3 104.642 23.940 -2.723 1.00 84.35 P
ATOM 3 OP1 A A 3 103.224 24.129 -3.144 1.00 83.72 O
ATOM 4 OP2 A A 3 105.393 25.091 -2.169 1.00 83.11 O
ATOM 5 O5' A A 3 104.708 22.776 -1.635 1.00 80.58 O
ATOM 6 C5' A A 3 103.721 21.743 -1.588 1.00 73.75 C
ATOM 7 C4' A A 3 104.152 20.651 -0.639 1.00 68.22 C
ATOM 8 O4' A A 3 105.275 19.947 -1.225 1.00 66.49 O
ATOM 9 C3' A A 3 104.667 21.158 0.698 1.00 66.40 C
ATOM 10 O3' A A 3 103.639 21.395 1.644 1.00 64.88 O
ATOM 11 C2' A A 3 105.642 20.072 1.117 1.00 66.18 C
ATOM 12 O2' A A 3 105.021 18.956 1.711 1.00 66.25 O
ATOM 13 C1' A A 3 106.256 19.694 -0.229 1.00 66.64 C
ATOM 14 N9 A A 3 107.405 20.571 -0.481 1.00 66.32 N
ATOM 15 C8 A A 3 107.430 21.758 -1.179 1.00 66.21 C
ATOM 16 N7 A A 3 108.586 22.373 -1.139 1.00 66.05 N
ATOM 17 C5 A A 3 109.384 21.527 -0.385 1.00 66.77 C
ATOM 18 C6 A A 3 110.714 21.628 0.046 1.00 68.12 C
ATOM 19 N6 A A 3 111.498 22.685 -0.211 1.00 68.40 N
ATOM 20 N1 A A 3 111.216 20.603 0.774 1.00 67.08 N
ATOM 21 C2 A A 3 110.416 19.565 1.060 1.00 65.91 C
ATOM 22 N3 A A 3 109.144 19.368 0.731 1.00 65.56 N
ATOM 23 C4 A A 3 108.681 20.397 0.000 1.00 65.99 C
ATOM 24 P U A 4 103.803 22.603 2.702 1.00 64.18 P
ATOM 25 OP1 U A 4 102.474 22.914 3.292 1.00 62.97 O
ATOM 26 OP2 U A 4 104.585 23.687 2.040 1.00 62.40 O
ATOM 27 O5' U A 4 104.713 21.980 3.855 1.00 64.95 O
TER
ATOM 1 O3' A B 1 101.578 23.794 -9.072 1.00121.21 O
ATOM 2 P A B 2 101.617 24.290 -7.531 1.00118.27 P
ATOM 3 OP1 A B 2 100.786 23.360 -6.719 1.00118.91 O
ATOM 4 OP2 A B 2 101.283 25.739 -7.545 1.00118.16 O
ATOM 5 O5' A B 2 103.150 24.155 -7.084 1.00113.93 O
ATOM 6 C5' A B 2 103.736 22.888 -6.744 1.00107.48 C
ATOM 7 C4' A B 2 105.201 23.063 -6.371 1.00103.45 C
ATOM 8 O4' A B 2 105.906 23.619 -7.511 1.00104.70 O
ATOM 9 C3' A B 2 105.480 24.022 -5.218 1.00 99.75 C
ATOM 10 O3' A B 2 105.472 23.336 -3.966 1.00 90.48 O
ATOM 11 C2' A B 2 106.867 24.575 -5.544 1.00101.83 C
ATOM 12 O2' A B 2 107.921 23.758 -5.076 1.00102.98 O
ATOM 13 C1' A B 2 106.864 24.572 -7.076 1.00104.62 C
ATOM 14 N9 A B 2 106.539 25.864 -7.699 1.00107.21 N
ATOM 15 C8 A B 2 105.288 26.333 -8.052 1.00107.73 C
ATOM 16 N7 A B 2 105.302 27.520 -8.612 1.00108.13 N
ATOM 17 C5 A B 2 106.649 27.866 -8.627 1.00108.78 C
ATOM 18 C6 A B 2 107.328 29.015 -9.092 1.00108.77 C
ATOM 19 N6 A B 2 106.719 30.061 -9.656 1.00108.29 N
ATOM 20 N1 A B 2 108.672 29.050 -8.953 1.00108.73 N
ATOM 21 C2 A B 2 109.285 27.997 -8.387 1.00108.51 C
ATOM 22 N3 A B 2 108.762 26.862 -7.915 1.00107.87 N
ATOM 23 C4 A B 2 107.424 26.857 -8.065 1.00108.07 C
ATOM 24 P A B 3 104.642 23.940 -2.723 1.00 84.35 P
ATOM 25 OP1 A B 3 103.224 24.129 -3.144 1.00 83.72 O
ATOM 26 OP2 A B 3 105.393 25.091 -2.169 1.00 83.11 O
ATOM 27 O5' A B 3 104.708 22.776 -1.635 1.00 80.58 O
TER
Atoms:
OP1: (103.224,24.129,-3.144)
OP2: (105.393,25.091,-2.169)
C3': (104.667,21.158,0.698)
C1': (106.256,19.694,-0.229)
C5': (103.721,21.743,-1.588)
O4': (105.275,19.947,-1.225)
C8: (107.430,21.758,-1.179)
O2': (105.021,18.956,1.711)
C6: (110.714,21.628,0.046)
C5: (109.384,21.527,-0.385)
C4: (108.681,20.397,0.000)
P: (104.642,23.940,-2.723)
C4': (104.152,20.651,-0.639)
C2': (105.642,20.072,1.117)
C2: (110.416,19.565,1.060)
N1: (111.216,20.603,0.774)
N3: (109.144,19.368,0.731)
N6: (111.498,22.685,-0.211)
N7: (108.586,22.373,-1.139)
N9: (107.405,20.571,-0.481)
O5': (104.708,22.776,-1.635)
O3': (103.639,21.395,1.644)
OP2: (105.393,25.091,-2.169)
C3': (104.667,21.158,0.698)
C1': (106.256,19.694,-0.229)
C5': (103.721,21.743,-1.588)
O4': (105.275,19.947,-1.225)
C8: (107.430,21.758,-1.179)
O2': (105.021,18.956,1.711)
C6: (110.714,21.628,0.046)
C5: (109.384,21.527,-0.385)
C4: (108.681,20.397,0.000)
P: (104.642,23.940,-2.723)
C4': (104.152,20.651,-0.639)
C2': (105.642,20.072,1.117)
C2: (110.416,19.565,1.060)
N1: (111.216,20.603,0.774)
N3: (109.144,19.368,0.731)
N6: (111.498,22.685,-0.211)
N7: (108.586,22.373,-1.139)
N9: (107.405,20.571,-0.481)
O5': (104.708,22.776,-1.635)
O3': (103.639,21.395,1.644)
OP1: (100.786,23.360,-6.719)
OP2: (101.283,25.739,-7.545)
C3': (105.480,24.022,-5.218)
C1': (106.864,24.572,-7.076)
C5': (103.736,22.888,-6.744)
O4': (105.906,23.619,-7.511)
C8: (105.288,26.333,-8.052)
O2': (107.921,23.758,-5.076)
C6: (107.328,29.015,-9.092)
C5: (106.649,27.866,-8.627)
C4: (107.424,26.857,-8.065)
P: (101.617,24.290,-7.531)
C4': (105.201,23.063,-6.371)
C2': (106.867,24.575,-5.544)
C2: (109.285,27.997,-8.387)
N1: (108.672,29.050,-8.953)
N3: (108.762,26.862,-7.915)
N6: (106.719,30.061,-9.656)
N7: (105.302,27.520,-8.612)
N9: (106.539,25.864,-7.699)
O5': (103.150,24.155,-7.084)
O3': (105.472,23.336,-3.966)
OP2: (101.283,25.739,-7.545)
C3': (105.480,24.022,-5.218)
C1': (106.864,24.572,-7.076)
C5': (103.736,22.888,-6.744)
O4': (105.906,23.619,-7.511)
C8: (105.288,26.333,-8.052)
O2': (107.921,23.758,-5.076)
C6: (107.328,29.015,-9.092)
C5: (106.649,27.866,-8.627)
C4: (107.424,26.857,-8.065)
P: (101.617,24.290,-7.531)
C4': (105.201,23.063,-6.371)
C2': (106.867,24.575,-5.544)
C2: (109.285,27.997,-8.387)
N1: (108.672,29.050,-8.953)
N3: (108.762,26.862,-7.915)
N6: (106.719,30.061,-9.656)
N7: (105.302,27.520,-8.612)
N9: (106.539,25.864,-7.699)
O5': (103.150,24.155,-7.084)
O3': (105.472,23.336,-3.966)
Image (generated by PyMOL):