Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1208:1206
Extra
PDB:
ATOM 1 O3' U A 207 104.836 -15.871 108.037 1.00 59.94 O
ATOM 2 P A A 208 104.558 -15.213 106.540 1.00 55.14 P
ATOM 3 OP1 A A 208 103.345 -15.862 106.013 1.00 54.64 O
ATOM 4 OP2 A A 208 105.819 -15.334 105.750 1.00 55.31 O
ATOM 5 O5' A A 208 104.222 -13.663 106.832 1.00 55.06 O
ATOM 6 C5' A A 208 102.868 -13.218 106.901 1.00 54.64 C
ATOM 7 C4' A A 208 102.728 -11.724 107.146 1.00 54.63 C
ATOM 8 O4' A A 208 103.438 -11.348 108.361 1.00 55.21 O
ATOM 9 C3' A A 208 103.262 -10.805 106.044 1.00 54.43 C
ATOM 10 O3' A A 208 102.500 -9.588 106.031 1.00 54.18 O
ATOM 11 C2' A A 208 104.659 -10.492 106.556 1.00 55.02 C
ATOM 12 O2' A A 208 105.242 -9.340 106.004 1.00 55.01 O
ATOM 13 C1' A A 208 104.376 -10.325 108.047 1.00 55.39 C
ATOM 14 N9 A A 208 105.553 -10.465 108.914 1.00 56.04 N
ATOM 15 C8 A A 208 106.704 -11.199 108.756 1.00 56.37 C
ATOM 16 N7 A A 208 107.597 -11.061 109.736 1.00 56.98 N
ATOM 17 C5 A A 208 106.977 -10.167 110.598 1.00 57.05 C
ATOM 18 C6 A A 208 107.369 -9.601 111.827 1.00 57.58 C
ATOM 19 N6 A A 208 108.508 -9.853 112.432 1.00 58.17 N
ATOM 20 N1 A A 208 106.540 -8.739 112.431 1.00 57.51 N
ATOM 21 C2 A A 208 105.375 -8.486 111.802 1.00 56.91 C
ATOM 22 N3 A A 208 104.880 -8.932 110.640 1.00 56.37 N
ATOM 23 C4 A A 208 105.738 -9.788 110.083 1.00 56.47 C
ATOM 24 P G A 209 101.100 -9.508 105.257 1.00 54.01 P
ATOM 25 OP1 G A 209 100.641 -8.103 105.287 1.00 53.87 O
ATOM 26 OP2 G A 209 100.230 -10.526 105.838 1.00 53.94 O
ATOM 27 O5' G A 209 101.499 -9.917 103.767 1.00 53.70 O
TER
ATOM 1 O3' C B 205 113.539 -10.196 108.517 1.00 65.55 O
ATOM 2 P A B 206 113.561 -11.786 108.257 1.00 59.25 P
ATOM 3 OP1 A B 206 113.601 -12.442 109.583 1.00 59.72 O
ATOM 4 OP2 A B 206 114.635 -12.068 107.282 1.00 59.33 O
ATOM 5 O5' A B 206 112.148 -12.043 107.596 1.00 58.55 O
ATOM 6 C5' A B 206 110.977 -11.607 108.260 1.00 58.34 C
ATOM 7 C4' A B 206 109.769 -11.998 107.505 1.00 57.70 C
ATOM 8 O4' A B 206 109.612 -11.186 106.306 1.00 57.25 O
ATOM 9 C3' A B 206 109.791 -13.410 107.004 1.00 57.60 C
ATOM 10 O3' A B 206 109.488 -14.318 108.056 1.00 57.86 O
ATOM 11 C2' A B 206 108.758 -13.362 105.889 1.00 56.91 C
ATOM 12 O2' A B 206 107.465 -13.418 106.441 1.00 56.65 O
ATOM 13 C1' A B 206 108.991 -11.948 105.311 1.00 56.76 C
ATOM 14 N9 A B 206 109.883 -11.961 104.147 1.00 56.71 N
ATOM 15 C8 A B 206 111.240 -11.845 104.187 1.00 57.18 C
ATOM 16 N7 A B 206 111.846 -11.882 103.013 1.00 57.05 N
ATOM 17 C5 A B 206 110.801 -12.006 102.129 1.00 56.44 C
ATOM 18 C6 A B 206 110.768 -12.086 100.734 1.00 56.05 C
ATOM 19 N6 A B 206 111.822 -12.089 99.928 1.00 56.19 N
ATOM 20 N1 A B 206 109.550 -12.188 100.170 1.00 55.49 N
ATOM 21 C2 A B 206 108.460 -12.209 100.952 1.00 55.34 C
ATOM 22 N3 A B 206 108.371 -12.129 102.278 1.00 55.68 N
ATOM 23 C4 A B 206 109.591 -12.044 102.814 1.00 56.23 C
ATOM 24 P U B 207 110.133 -15.773 108.097 1.00 61.70 P
ATOM 25 OP1 U B 207 110.316 -16.107 109.507 1.00 62.23 O
ATOM 26 OP2 U B 207 111.308 -15.766 107.212 1.00 61.82 O
ATOM 27 O5' U B 207 108.979 -16.662 107.461 1.00 61.16 O
TER
ATOM 2 P A A 208 104.558 -15.213 106.540 1.00 55.14 P
ATOM 3 OP1 A A 208 103.345 -15.862 106.013 1.00 54.64 O
ATOM 4 OP2 A A 208 105.819 -15.334 105.750 1.00 55.31 O
ATOM 5 O5' A A 208 104.222 -13.663 106.832 1.00 55.06 O
ATOM 6 C5' A A 208 102.868 -13.218 106.901 1.00 54.64 C
ATOM 7 C4' A A 208 102.728 -11.724 107.146 1.00 54.63 C
ATOM 8 O4' A A 208 103.438 -11.348 108.361 1.00 55.21 O
ATOM 9 C3' A A 208 103.262 -10.805 106.044 1.00 54.43 C
ATOM 10 O3' A A 208 102.500 -9.588 106.031 1.00 54.18 O
ATOM 11 C2' A A 208 104.659 -10.492 106.556 1.00 55.02 C
ATOM 12 O2' A A 208 105.242 -9.340 106.004 1.00 55.01 O
ATOM 13 C1' A A 208 104.376 -10.325 108.047 1.00 55.39 C
ATOM 14 N9 A A 208 105.553 -10.465 108.914 1.00 56.04 N
ATOM 15 C8 A A 208 106.704 -11.199 108.756 1.00 56.37 C
ATOM 16 N7 A A 208 107.597 -11.061 109.736 1.00 56.98 N
ATOM 17 C5 A A 208 106.977 -10.167 110.598 1.00 57.05 C
ATOM 18 C6 A A 208 107.369 -9.601 111.827 1.00 57.58 C
ATOM 19 N6 A A 208 108.508 -9.853 112.432 1.00 58.17 N
ATOM 20 N1 A A 208 106.540 -8.739 112.431 1.00 57.51 N
ATOM 21 C2 A A 208 105.375 -8.486 111.802 1.00 56.91 C
ATOM 22 N3 A A 208 104.880 -8.932 110.640 1.00 56.37 N
ATOM 23 C4 A A 208 105.738 -9.788 110.083 1.00 56.47 C
ATOM 24 P G A 209 101.100 -9.508 105.257 1.00 54.01 P
ATOM 25 OP1 G A 209 100.641 -8.103 105.287 1.00 53.87 O
ATOM 26 OP2 G A 209 100.230 -10.526 105.838 1.00 53.94 O
ATOM 27 O5' G A 209 101.499 -9.917 103.767 1.00 53.70 O
TER
ATOM 1 O3' C B 205 113.539 -10.196 108.517 1.00 65.55 O
ATOM 2 P A B 206 113.561 -11.786 108.257 1.00 59.25 P
ATOM 3 OP1 A B 206 113.601 -12.442 109.583 1.00 59.72 O
ATOM 4 OP2 A B 206 114.635 -12.068 107.282 1.00 59.33 O
ATOM 5 O5' A B 206 112.148 -12.043 107.596 1.00 58.55 O
ATOM 6 C5' A B 206 110.977 -11.607 108.260 1.00 58.34 C
ATOM 7 C4' A B 206 109.769 -11.998 107.505 1.00 57.70 C
ATOM 8 O4' A B 206 109.612 -11.186 106.306 1.00 57.25 O
ATOM 9 C3' A B 206 109.791 -13.410 107.004 1.00 57.60 C
ATOM 10 O3' A B 206 109.488 -14.318 108.056 1.00 57.86 O
ATOM 11 C2' A B 206 108.758 -13.362 105.889 1.00 56.91 C
ATOM 12 O2' A B 206 107.465 -13.418 106.441 1.00 56.65 O
ATOM 13 C1' A B 206 108.991 -11.948 105.311 1.00 56.76 C
ATOM 14 N9 A B 206 109.883 -11.961 104.147 1.00 56.71 N
ATOM 15 C8 A B 206 111.240 -11.845 104.187 1.00 57.18 C
ATOM 16 N7 A B 206 111.846 -11.882 103.013 1.00 57.05 N
ATOM 17 C5 A B 206 110.801 -12.006 102.129 1.00 56.44 C
ATOM 18 C6 A B 206 110.768 -12.086 100.734 1.00 56.05 C
ATOM 19 N6 A B 206 111.822 -12.089 99.928 1.00 56.19 N
ATOM 20 N1 A B 206 109.550 -12.188 100.170 1.00 55.49 N
ATOM 21 C2 A B 206 108.460 -12.209 100.952 1.00 55.34 C
ATOM 22 N3 A B 206 108.371 -12.129 102.278 1.00 55.68 N
ATOM 23 C4 A B 206 109.591 -12.044 102.814 1.00 56.23 C
ATOM 24 P U B 207 110.133 -15.773 108.097 1.00 61.70 P
ATOM 25 OP1 U B 207 110.316 -16.107 109.507 1.00 62.23 O
ATOM 26 OP2 U B 207 111.308 -15.766 107.212 1.00 61.82 O
ATOM 27 O5' U B 207 108.979 -16.662 107.461 1.00 61.16 O
TER
Atoms:
OP1: (103.345,-15.862,106.013)
OP2: (105.819,-15.334,105.750)
C3': (103.262,-10.805,106.044)
C1': (104.376,-10.325,108.047)
C5': (102.868,-13.218,106.901)
O4': (103.438,-11.348,108.361)
C8: (106.704,-11.199,108.756)
O2': (105.242,-9.340,106.004)
C6: (107.369,-9.601,111.827)
C5: (106.977,-10.167,110.598)
C4: (105.738,-9.788,110.083)
P: (104.558,-15.213,106.540)
C4': (102.728,-11.724,107.146)
C2': (104.659,-10.492,106.556)
C2: (105.375,-8.486,111.802)
N1: (106.540,-8.739,112.431)
N3: (104.880,-8.932,110.640)
N6: (108.508,-9.853,112.432)
N7: (107.597,-11.061,109.736)
N9: (105.553,-10.465,108.914)
O5': (104.222,-13.663,106.832)
O3': (102.500,-9.588,106.031)
OP2: (105.819,-15.334,105.750)
C3': (103.262,-10.805,106.044)
C1': (104.376,-10.325,108.047)
C5': (102.868,-13.218,106.901)
O4': (103.438,-11.348,108.361)
C8: (106.704,-11.199,108.756)
O2': (105.242,-9.340,106.004)
C6: (107.369,-9.601,111.827)
C5: (106.977,-10.167,110.598)
C4: (105.738,-9.788,110.083)
P: (104.558,-15.213,106.540)
C4': (102.728,-11.724,107.146)
C2': (104.659,-10.492,106.556)
C2: (105.375,-8.486,111.802)
N1: (106.540,-8.739,112.431)
N3: (104.880,-8.932,110.640)
N6: (108.508,-9.853,112.432)
N7: (107.597,-11.061,109.736)
N9: (105.553,-10.465,108.914)
O5': (104.222,-13.663,106.832)
O3': (102.500,-9.588,106.031)
OP1: (113.601,-12.442,109.583)
OP2: (114.635,-12.068,107.282)
C3': (109.791,-13.410,107.004)
C1': (108.991,-11.948,105.311)
C5': (110.977,-11.607,108.260)
O4': (109.612,-11.186,106.306)
C8: (111.240,-11.845,104.187)
O2': (107.465,-13.418,106.441)
C6: (110.768,-12.086,100.734)
C5: (110.801,-12.006,102.129)
C4: (109.591,-12.044,102.814)
P: (113.561,-11.786,108.257)
C4': (109.769,-11.998,107.505)
C2': (108.758,-13.362,105.889)
C2: (108.460,-12.209,100.952)
N1: (109.550,-12.188,100.170)
N3: (108.371,-12.129,102.278)
N6: (111.822,-12.089,99.928)
N7: (111.846,-11.882,103.013)
N9: (109.883,-11.961,104.147)
O5': (112.148,-12.043,107.596)
O3': (109.488,-14.318,108.056)
OP2: (114.635,-12.068,107.282)
C3': (109.791,-13.410,107.004)
C1': (108.991,-11.948,105.311)
C5': (110.977,-11.607,108.260)
O4': (109.612,-11.186,106.306)
C8: (111.240,-11.845,104.187)
O2': (107.465,-13.418,106.441)
C6: (110.768,-12.086,100.734)
C5: (110.801,-12.006,102.129)
C4: (109.591,-12.044,102.814)
P: (113.561,-11.786,108.257)
C4': (109.769,-11.998,107.505)
C2': (108.758,-13.362,105.889)
C2: (108.460,-12.209,100.952)
N1: (109.550,-12.188,100.170)
N3: (108.371,-12.129,102.278)
N6: (111.822,-12.089,99.928)
N7: (111.846,-11.882,103.013)
N9: (109.883,-11.961,104.147)
O5': (112.148,-12.043,107.596)
O3': (109.488,-14.318,108.056)
Image (generated by PyMOL):