Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B43:B42
Extra
PDB:
ATOM 1 O3' A A 42 -12.956 34.902 20.286 1.00 75.73 O
ATOM 2 P A A 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 3 OP1 A A 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 4 OP2 A A 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 5 O5' A A 43 -15.359 35.493 19.860 1.00 75.99 O
ATOM 6 C5' A A 43 -15.766 36.077 21.094 1.00 72.16 C
ATOM 7 C4' A A 43 -16.854 37.081 20.835 1.00 70.00 C
ATOM 8 O4' A A 43 -16.309 38.194 20.096 1.00 70.65 O
ATOM 9 C3' A A 43 -17.964 36.540 19.960 1.00 69.77 C
ATOM 10 O3' A A 43 -18.927 35.857 20.734 1.00 69.86 O
ATOM 11 C2' A A 43 -18.503 37.781 19.266 1.00 69.59 C
ATOM 12 O2' A A 43 -19.443 38.478 20.044 1.00 68.26 O
ATOM 13 C1' A A 43 -17.234 38.618 19.108 1.00 71.04 C
ATOM 14 N9 A A 43 -16.596 38.442 17.803 1.00 72.54 N
ATOM 15 C8 A A 43 -15.501 37.663 17.508 1.00 73.01 C
ATOM 16 N7 A A 43 -15.147 37.706 16.249 1.00 72.84 N
ATOM 17 C5 A A 43 -16.070 38.569 15.675 1.00 72.25 C
ATOM 18 C6 A A 43 -16.242 39.022 14.367 1.00 71.83 C
ATOM 19 N6 A A 43 -15.459 38.658 13.352 1.00 72.70 N
ATOM 20 N1 A A 43 -17.259 39.870 14.125 1.00 71.37 N
ATOM 21 C2 A A 43 -18.046 40.232 15.139 1.00 70.51 C
ATOM 22 N3 A A 43 -17.991 39.871 16.414 1.00 71.33 N
ATOM 23 C4 A A 43 -16.968 39.028 16.620 1.00 71.95 C
ATOM 24 P C A 44 -19.836 34.733 20.046 1.00 69.72 P
ATOM 25 OP1 C A 44 -20.898 34.401 21.034 1.00 70.29 O
ATOM 26 OP2 C A 44 -18.968 33.660 19.495 1.00 70.03 O
ATOM 27 O5' C A 44 -20.535 35.500 18.847 1.00 68.29 O
TER
ATOM 1 O3' C B 41 -10.339 34.693 15.698 1.00 77.55 O
ATOM 2 P A B 42 -9.717 33.876 16.933 1.00 79.04 P
ATOM 3 OP1 A B 42 -8.283 34.256 17.083 1.00 76.70 O
ATOM 4 OP2 A B 42 -10.091 32.445 16.747 1.00 78.64 O
ATOM 5 O5' A B 42 -10.548 34.425 18.172 1.00 77.82 O
ATOM 6 C5' A B 42 -9.918 35.066 19.273 1.00 77.26 C
ATOM 7 C4' A B 42 -10.863 36.073 19.873 1.00 77.17 C
ATOM 8 O4' A B 42 -10.533 37.408 19.419 1.00 77.69 O
ATOM 9 C3' A B 42 -12.312 35.864 19.470 1.00 76.93 C
ATOM 10 O3' A B 42 -12.956 34.902 20.286 1.00 75.73 O
ATOM 11 C2' A B 42 -12.916 37.257 19.595 1.00 77.50 C
ATOM 12 O2' A B 42 -13.367 37.548 20.896 1.00 77.68 O
ATOM 13 C1' A B 42 -11.727 38.153 19.231 1.00 78.44 C
ATOM 14 N9 A B 42 -11.764 38.626 17.846 1.00 79.17 N
ATOM 15 C8 A B 42 -10.932 38.290 16.804 1.00 78.60 C
ATOM 16 N7 A B 42 -11.218 38.904 15.681 1.00 78.80 N
ATOM 17 C5 A B 42 -12.315 39.694 16.002 1.00 78.94 C
ATOM 18 C6 A B 42 -13.090 40.593 15.244 1.00 78.73 C
ATOM 19 N6 A B 42 -12.866 40.867 13.957 1.00 77.82 N
ATOM 20 N1 A B 42 -14.117 41.213 15.865 1.00 79.32 N
ATOM 21 C2 A B 42 -14.337 40.950 17.160 1.00 80.17 C
ATOM 22 N3 A B 42 -13.675 40.131 17.980 1.00 80.23 N
ATOM 23 C4 A B 42 -12.664 39.527 17.330 1.00 79.19 C
ATOM 24 P A B 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 25 OP1 A B 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 26 OP2 A B 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 27 O5' A B 43 -15.359 35.493 19.860 1.00 75.99 O
TER
ATOM 2 P A A 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 3 OP1 A A 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 4 OP2 A A 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 5 O5' A A 43 -15.359 35.493 19.860 1.00 75.99 O
ATOM 6 C5' A A 43 -15.766 36.077 21.094 1.00 72.16 C
ATOM 7 C4' A A 43 -16.854 37.081 20.835 1.00 70.00 C
ATOM 8 O4' A A 43 -16.309 38.194 20.096 1.00 70.65 O
ATOM 9 C3' A A 43 -17.964 36.540 19.960 1.00 69.77 C
ATOM 10 O3' A A 43 -18.927 35.857 20.734 1.00 69.86 O
ATOM 11 C2' A A 43 -18.503 37.781 19.266 1.00 69.59 C
ATOM 12 O2' A A 43 -19.443 38.478 20.044 1.00 68.26 O
ATOM 13 C1' A A 43 -17.234 38.618 19.108 1.00 71.04 C
ATOM 14 N9 A A 43 -16.596 38.442 17.803 1.00 72.54 N
ATOM 15 C8 A A 43 -15.501 37.663 17.508 1.00 73.01 C
ATOM 16 N7 A A 43 -15.147 37.706 16.249 1.00 72.84 N
ATOM 17 C5 A A 43 -16.070 38.569 15.675 1.00 72.25 C
ATOM 18 C6 A A 43 -16.242 39.022 14.367 1.00 71.83 C
ATOM 19 N6 A A 43 -15.459 38.658 13.352 1.00 72.70 N
ATOM 20 N1 A A 43 -17.259 39.870 14.125 1.00 71.37 N
ATOM 21 C2 A A 43 -18.046 40.232 15.139 1.00 70.51 C
ATOM 22 N3 A A 43 -17.991 39.871 16.414 1.00 71.33 N
ATOM 23 C4 A A 43 -16.968 39.028 16.620 1.00 71.95 C
ATOM 24 P C A 44 -19.836 34.733 20.046 1.00 69.72 P
ATOM 25 OP1 C A 44 -20.898 34.401 21.034 1.00 70.29 O
ATOM 26 OP2 C A 44 -18.968 33.660 19.495 1.00 70.03 O
ATOM 27 O5' C A 44 -20.535 35.500 18.847 1.00 68.29 O
TER
ATOM 1 O3' C B 41 -10.339 34.693 15.698 1.00 77.55 O
ATOM 2 P A B 42 -9.717 33.876 16.933 1.00 79.04 P
ATOM 3 OP1 A B 42 -8.283 34.256 17.083 1.00 76.70 O
ATOM 4 OP2 A B 42 -10.091 32.445 16.747 1.00 78.64 O
ATOM 5 O5' A B 42 -10.548 34.425 18.172 1.00 77.82 O
ATOM 6 C5' A B 42 -9.918 35.066 19.273 1.00 77.26 C
ATOM 7 C4' A B 42 -10.863 36.073 19.873 1.00 77.17 C
ATOM 8 O4' A B 42 -10.533 37.408 19.419 1.00 77.69 O
ATOM 9 C3' A B 42 -12.312 35.864 19.470 1.00 76.93 C
ATOM 10 O3' A B 42 -12.956 34.902 20.286 1.00 75.73 O
ATOM 11 C2' A B 42 -12.916 37.257 19.595 1.00 77.50 C
ATOM 12 O2' A B 42 -13.367 37.548 20.896 1.00 77.68 O
ATOM 13 C1' A B 42 -11.727 38.153 19.231 1.00 78.44 C
ATOM 14 N9 A B 42 -11.764 38.626 17.846 1.00 79.17 N
ATOM 15 C8 A B 42 -10.932 38.290 16.804 1.00 78.60 C
ATOM 16 N7 A B 42 -11.218 38.904 15.681 1.00 78.80 N
ATOM 17 C5 A B 42 -12.315 39.694 16.002 1.00 78.94 C
ATOM 18 C6 A B 42 -13.090 40.593 15.244 1.00 78.73 C
ATOM 19 N6 A B 42 -12.866 40.867 13.957 1.00 77.82 N
ATOM 20 N1 A B 42 -14.117 41.213 15.865 1.00 79.32 N
ATOM 21 C2 A B 42 -14.337 40.950 17.160 1.00 80.17 C
ATOM 22 N3 A B 42 -13.675 40.131 17.980 1.00 80.23 N
ATOM 23 C4 A B 42 -12.664 39.527 17.330 1.00 79.19 C
ATOM 24 P A B 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 25 OP1 A B 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 26 OP2 A B 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 27 O5' A B 43 -15.359 35.493 19.860 1.00 75.99 O
TER
Atoms:
OP1: (-14.773,33.222,20.785)
OP2: (-14.200,33.901,18.366)
C3': (-17.964,36.540,19.960)
C1': (-17.234,38.618,19.108)
C5': (-15.766,36.077,21.094)
O4': (-16.309,38.194,20.096)
C8: (-15.501,37.663,17.508)
O2': (-19.443,38.478,20.044)
C6: (-16.242,39.022,14.367)
C5: (-16.070,38.569,15.675)
C4: (-16.968,39.028,16.620)
P: (-14.347,34.262,19.802)
C4': (-16.854,37.081,20.835)
C2': (-18.503,37.781,19.266)
C2: (-18.046,40.232,15.139)
N1: (-17.259,39.870,14.125)
N3: (-17.991,39.871,16.414)
N6: (-15.459,38.658,13.352)
N7: (-15.147,37.706,16.249)
N9: (-16.596,38.442,17.803)
O5': (-15.359,35.493,19.860)
O3': (-18.927,35.857,20.734)
OP2: (-14.200,33.901,18.366)
C3': (-17.964,36.540,19.960)
C1': (-17.234,38.618,19.108)
C5': (-15.766,36.077,21.094)
O4': (-16.309,38.194,20.096)
C8: (-15.501,37.663,17.508)
O2': (-19.443,38.478,20.044)
C6: (-16.242,39.022,14.367)
C5: (-16.070,38.569,15.675)
C4: (-16.968,39.028,16.620)
P: (-14.347,34.262,19.802)
C4': (-16.854,37.081,20.835)
C2': (-18.503,37.781,19.266)
C2: (-18.046,40.232,15.139)
N1: (-17.259,39.870,14.125)
N3: (-17.991,39.871,16.414)
N6: (-15.459,38.658,13.352)
N7: (-15.147,37.706,16.249)
N9: (-16.596,38.442,17.803)
O5': (-15.359,35.493,19.860)
O3': (-18.927,35.857,20.734)
OP1: (-8.283,34.256,17.083)
OP2: (-10.091,32.445,16.747)
C3': (-12.312,35.864,19.470)
C1': (-11.727,38.153,19.231)
C5': (-9.918,35.066,19.273)
O4': (-10.533,37.408,19.419)
C8: (-10.932,38.290,16.804)
O2': (-13.367,37.548,20.896)
C6: (-13.090,40.593,15.244)
C5: (-12.315,39.694,16.002)
C4: (-12.664,39.527,17.330)
P: (-9.717,33.876,16.933)
C4': (-10.863,36.073,19.873)
C2': (-12.916,37.257,19.595)
C2: (-14.337,40.950,17.160)
N1: (-14.117,41.213,15.865)
N3: (-13.675,40.131,17.980)
N6: (-12.866,40.867,13.957)
N7: (-11.218,38.904,15.681)
N9: (-11.764,38.626,17.846)
O5': (-10.548,34.425,18.172)
O3': (-12.956,34.902,20.286)
OP2: (-10.091,32.445,16.747)
C3': (-12.312,35.864,19.470)
C1': (-11.727,38.153,19.231)
C5': (-9.918,35.066,19.273)
O4': (-10.533,37.408,19.419)
C8: (-10.932,38.290,16.804)
O2': (-13.367,37.548,20.896)
C6: (-13.090,40.593,15.244)
C5: (-12.315,39.694,16.002)
C4: (-12.664,39.527,17.330)
P: (-9.717,33.876,16.933)
C4': (-10.863,36.073,19.873)
C2': (-12.916,37.257,19.595)
C2: (-14.337,40.950,17.160)
N1: (-14.117,41.213,15.865)
N3: (-13.675,40.131,17.980)
N6: (-12.866,40.867,13.957)
N7: (-11.218,38.904,15.681)
N9: (-11.764,38.626,17.846)
O5': (-10.548,34.425,18.172)
O3': (-12.956,34.902,20.286)
Image (generated by PyMOL):