Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2J02:X4:X3
Extra
PDB:
ATOM 1 O3' A A 3 -105.104 23.963 4.460 1.00 31.30 O
ATOM 2 P A A 4 -104.255 24.793 3.399 1.00 25.14 P
ATOM 3 OP1 A A 4 -102.894 24.981 3.952 1.00 25.14 O
ATOM 4 OP2 A A 4 -105.091 25.970 3.046 1.00 25.14 O
ATOM 5 O5' A A 4 -104.165 23.858 2.122 1.00 5.59 O
ATOM 6 C5' A A 4 -103.474 22.625 2.164 1.00 5.59 C
ATOM 7 C4' A A 4 -104.240 21.595 1.391 1.00 5.59 C
ATOM 8 O4' A A 4 -105.471 21.277 2.085 1.00 5.59 O
ATOM 9 C3' A A 4 -104.713 22.027 0.019 1.00 5.59 C
ATOM 10 O3' A A 4 -103.665 21.954 -0.938 1.00 5.59 O
ATOM 11 C2' A A 4 -105.856 21.055 -0.251 1.00 5.59 C
ATOM 12 O2' A A 4 -105.428 19.793 -0.719 1.00 5.59 O
ATOM 13 C1' A A 4 -106.445 20.856 1.147 1.00 5.59 C
ATOM 14 N9 A A 4 -107.676 21.618 1.345 1.00 17.94 N
ATOM 15 C8 A A 4 -107.895 22.694 2.159 1.00 17.94 C
ATOM 16 N7 A A 4 -109.104 23.198 2.056 1.00 17.94 N
ATOM 17 C5 A A 4 -109.722 22.391 1.117 1.00 17.94 C
ATOM 18 C6 A A 4 -111.003 22.420 0.549 1.00 17.94 C
ATOM 19 N6 A A 4 -111.921 23.331 0.851 1.00 17.94 N
ATOM 20 N1 A A 4 -111.310 21.473 -0.357 1.00 17.94 N
ATOM 21 C2 A A 4 -110.379 20.563 -0.666 1.00 17.94 C
ATOM 22 N3 A A 4 -109.131 20.436 -0.205 1.00 17.94 N
ATOM 23 C4 A A 4 -108.864 21.397 0.690 1.00 17.94 C
ATOM 24 P U A 5 -103.634 23.002 -2.162 1.00 19.73 P
ATOM 25 OP1 U A 5 -102.357 22.777 -2.901 1.00 36.10 O
ATOM 26 OP2 U A 5 -103.940 24.352 -1.632 1.00 36.10 O
ATOM 27 O5' U A 5 -104.860 22.540 -3.077 1.00 11.34 O
TER
ATOM 1 O3' A B 2 -103.095 25.920 9.973 1.00 70.52 O
ATOM 2 P A B 3 -102.778 26.309 8.437 1.00 32.48 P
ATOM 3 OP1 A B 3 -101.551 25.556 8.076 1.00 48.85 O
ATOM 4 OP2 A B 3 -102.809 27.789 8.245 1.00 48.85 O
ATOM 5 O5' A B 3 -104.004 25.687 7.634 1.00 31.30 O
ATOM 6 C5' A B 3 -104.158 24.259 7.532 1.00 31.30 C
ATOM 7 C4' A B 3 -105.454 23.918 6.846 1.00 31.30 C
ATOM 8 O4' A B 3 -106.562 24.297 7.691 1.00 31.30 O
ATOM 9 C3' A B 3 -105.696 24.648 5.541 1.00 31.30 C
ATOM 10 O3' A B 3 -105.104 23.963 4.460 1.00 31.30 O
ATOM 11 C2' A B 3 -107.206 24.644 5.422 1.00 31.30 C
ATOM 12 O2' A B 3 -107.667 23.433 4.866 1.00 31.30 O
ATOM 13 C1' A B 3 -107.637 24.744 6.889 1.00 31.30 C
ATOM 14 N9 A B 3 -107.980 26.108 7.287 1.00 92.20 N
ATOM 15 C8 A B 3 -107.211 27.031 7.951 1.00 92.20 C
ATOM 16 N7 A B 3 -107.802 28.188 8.116 1.00 92.20 N
ATOM 17 C5 A B 3 -109.045 28.013 7.527 1.00 92.20 C
ATOM 18 C6 A B 3 -110.140 28.875 7.355 1.00 92.20 C
ATOM 19 N6 A B 3 -110.158 30.146 7.770 1.00 92.20 N
ATOM 20 N1 A B 3 -111.233 28.384 6.729 1.00 92.20 N
ATOM 21 C2 A B 3 -111.214 27.114 6.305 1.00 92.20 C
ATOM 22 N3 A B 3 -110.244 26.212 6.401 1.00 92.20 N
ATOM 23 C4 A B 3 -109.174 26.732 7.028 1.00 92.20 C
ATOM 24 P A B 4 -104.255 24.793 3.399 1.00 25.14 P
ATOM 25 OP1 A B 4 -102.894 24.981 3.952 1.00 25.14 O
ATOM 26 OP2 A B 4 -105.091 25.970 3.046 1.00 25.14 O
ATOM 27 O5' A B 4 -104.165 23.858 2.122 1.00 5.59 O
TER
ATOM 2 P A A 4 -104.255 24.793 3.399 1.00 25.14 P
ATOM 3 OP1 A A 4 -102.894 24.981 3.952 1.00 25.14 O
ATOM 4 OP2 A A 4 -105.091 25.970 3.046 1.00 25.14 O
ATOM 5 O5' A A 4 -104.165 23.858 2.122 1.00 5.59 O
ATOM 6 C5' A A 4 -103.474 22.625 2.164 1.00 5.59 C
ATOM 7 C4' A A 4 -104.240 21.595 1.391 1.00 5.59 C
ATOM 8 O4' A A 4 -105.471 21.277 2.085 1.00 5.59 O
ATOM 9 C3' A A 4 -104.713 22.027 0.019 1.00 5.59 C
ATOM 10 O3' A A 4 -103.665 21.954 -0.938 1.00 5.59 O
ATOM 11 C2' A A 4 -105.856 21.055 -0.251 1.00 5.59 C
ATOM 12 O2' A A 4 -105.428 19.793 -0.719 1.00 5.59 O
ATOM 13 C1' A A 4 -106.445 20.856 1.147 1.00 5.59 C
ATOM 14 N9 A A 4 -107.676 21.618 1.345 1.00 17.94 N
ATOM 15 C8 A A 4 -107.895 22.694 2.159 1.00 17.94 C
ATOM 16 N7 A A 4 -109.104 23.198 2.056 1.00 17.94 N
ATOM 17 C5 A A 4 -109.722 22.391 1.117 1.00 17.94 C
ATOM 18 C6 A A 4 -111.003 22.420 0.549 1.00 17.94 C
ATOM 19 N6 A A 4 -111.921 23.331 0.851 1.00 17.94 N
ATOM 20 N1 A A 4 -111.310 21.473 -0.357 1.00 17.94 N
ATOM 21 C2 A A 4 -110.379 20.563 -0.666 1.00 17.94 C
ATOM 22 N3 A A 4 -109.131 20.436 -0.205 1.00 17.94 N
ATOM 23 C4 A A 4 -108.864 21.397 0.690 1.00 17.94 C
ATOM 24 P U A 5 -103.634 23.002 -2.162 1.00 19.73 P
ATOM 25 OP1 U A 5 -102.357 22.777 -2.901 1.00 36.10 O
ATOM 26 OP2 U A 5 -103.940 24.352 -1.632 1.00 36.10 O
ATOM 27 O5' U A 5 -104.860 22.540 -3.077 1.00 11.34 O
TER
ATOM 1 O3' A B 2 -103.095 25.920 9.973 1.00 70.52 O
ATOM 2 P A B 3 -102.778 26.309 8.437 1.00 32.48 P
ATOM 3 OP1 A B 3 -101.551 25.556 8.076 1.00 48.85 O
ATOM 4 OP2 A B 3 -102.809 27.789 8.245 1.00 48.85 O
ATOM 5 O5' A B 3 -104.004 25.687 7.634 1.00 31.30 O
ATOM 6 C5' A B 3 -104.158 24.259 7.532 1.00 31.30 C
ATOM 7 C4' A B 3 -105.454 23.918 6.846 1.00 31.30 C
ATOM 8 O4' A B 3 -106.562 24.297 7.691 1.00 31.30 O
ATOM 9 C3' A B 3 -105.696 24.648 5.541 1.00 31.30 C
ATOM 10 O3' A B 3 -105.104 23.963 4.460 1.00 31.30 O
ATOM 11 C2' A B 3 -107.206 24.644 5.422 1.00 31.30 C
ATOM 12 O2' A B 3 -107.667 23.433 4.866 1.00 31.30 O
ATOM 13 C1' A B 3 -107.637 24.744 6.889 1.00 31.30 C
ATOM 14 N9 A B 3 -107.980 26.108 7.287 1.00 92.20 N
ATOM 15 C8 A B 3 -107.211 27.031 7.951 1.00 92.20 C
ATOM 16 N7 A B 3 -107.802 28.188 8.116 1.00 92.20 N
ATOM 17 C5 A B 3 -109.045 28.013 7.527 1.00 92.20 C
ATOM 18 C6 A B 3 -110.140 28.875 7.355 1.00 92.20 C
ATOM 19 N6 A B 3 -110.158 30.146 7.770 1.00 92.20 N
ATOM 20 N1 A B 3 -111.233 28.384 6.729 1.00 92.20 N
ATOM 21 C2 A B 3 -111.214 27.114 6.305 1.00 92.20 C
ATOM 22 N3 A B 3 -110.244 26.212 6.401 1.00 92.20 N
ATOM 23 C4 A B 3 -109.174 26.732 7.028 1.00 92.20 C
ATOM 24 P A B 4 -104.255 24.793 3.399 1.00 25.14 P
ATOM 25 OP1 A B 4 -102.894 24.981 3.952 1.00 25.14 O
ATOM 26 OP2 A B 4 -105.091 25.970 3.046 1.00 25.14 O
ATOM 27 O5' A B 4 -104.165 23.858 2.122 1.00 5.59 O
TER
Atoms:
OP1: (-102.894,24.981,3.952)
OP2: (-105.091,25.970,3.046)
C3': (-104.713,22.027,0.019)
C1': (-106.445,20.856,1.147)
C5': (-103.474,22.625,2.164)
O4': (-105.471,21.277,2.085)
C8: (-107.895,22.694,2.159)
O2': (-105.428,19.793,-0.719)
C6: (-111.003,22.420,0.549)
C5: (-109.722,22.391,1.117)
C4: (-108.864,21.397,0.690)
P: (-104.255,24.793,3.399)
C4': (-104.240,21.595,1.391)
C2': (-105.856,21.055,-0.251)
C2: (-110.379,20.563,-0.666)
N1: (-111.310,21.473,-0.357)
N3: (-109.131,20.436,-0.205)
N6: (-111.921,23.331,0.851)
N7: (-109.104,23.198,2.056)
N9: (-107.676,21.618,1.345)
O5': (-104.165,23.858,2.122)
O3': (-103.665,21.954,-0.938)
OP2: (-105.091,25.970,3.046)
C3': (-104.713,22.027,0.019)
C1': (-106.445,20.856,1.147)
C5': (-103.474,22.625,2.164)
O4': (-105.471,21.277,2.085)
C8: (-107.895,22.694,2.159)
O2': (-105.428,19.793,-0.719)
C6: (-111.003,22.420,0.549)
C5: (-109.722,22.391,1.117)
C4: (-108.864,21.397,0.690)
P: (-104.255,24.793,3.399)
C4': (-104.240,21.595,1.391)
C2': (-105.856,21.055,-0.251)
C2: (-110.379,20.563,-0.666)
N1: (-111.310,21.473,-0.357)
N3: (-109.131,20.436,-0.205)
N6: (-111.921,23.331,0.851)
N7: (-109.104,23.198,2.056)
N9: (-107.676,21.618,1.345)
O5': (-104.165,23.858,2.122)
O3': (-103.665,21.954,-0.938)
OP1: (-101.551,25.556,8.076)
OP2: (-102.809,27.789,8.245)
C3': (-105.696,24.648,5.541)
C1': (-107.637,24.744,6.889)
C5': (-104.158,24.259,7.532)
O4': (-106.562,24.297,7.691)
C8: (-107.211,27.031,7.951)
O2': (-107.667,23.433,4.866)
C6: (-110.140,28.875,7.355)
C5: (-109.045,28.013,7.527)
C4: (-109.174,26.732,7.028)
P: (-102.778,26.309,8.437)
C4': (-105.454,23.918,6.846)
C2': (-107.206,24.644,5.422)
C2: (-111.214,27.114,6.305)
N1: (-111.233,28.384,6.729)
N3: (-110.244,26.212,6.401)
N6: (-110.158,30.146,7.770)
N7: (-107.802,28.188,8.116)
N9: (-107.980,26.108,7.287)
O5': (-104.004,25.687,7.634)
O3': (-105.104,23.963,4.460)
OP2: (-102.809,27.789,8.245)
C3': (-105.696,24.648,5.541)
C1': (-107.637,24.744,6.889)
C5': (-104.158,24.259,7.532)
O4': (-106.562,24.297,7.691)
C8: (-107.211,27.031,7.951)
O2': (-107.667,23.433,4.866)
C6: (-110.140,28.875,7.355)
C5: (-109.045,28.013,7.527)
C4: (-109.174,26.732,7.028)
P: (-102.778,26.309,8.437)
C4': (-105.454,23.918,6.846)
C2': (-107.206,24.644,5.422)
C2: (-111.214,27.114,6.305)
N1: (-111.233,28.384,6.729)
N3: (-110.244,26.212,6.401)
N6: (-110.158,30.146,7.770)
N7: (-107.802,28.188,8.116)
N9: (-107.980,26.108,7.287)
O5': (-104.004,25.687,7.634)
O3': (-105.104,23.963,4.460)
Image (generated by PyMOL):