Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQK:01239:01237
Extra
PDB:
ATOM 1 O3' U A1238 12.233 94.395 65.862 1.00100.22 O
ATOM 2 P A A1239 10.626 94.472 65.750 1.00100.64 P
ATOM 3 OP1 A A1239 10.151 95.426 66.789 1.00100.39 O
ATOM 4 OP2 A A1239 10.099 93.078 65.739 1.00100.71 O
ATOM 5 O5' A A1239 10.351 95.128 64.323 1.00 97.31 O
ATOM 6 C5' A A1239 10.329 96.560 64.151 1.00 93.91 C
ATOM 7 C4' A A1239 8.911 97.035 63.917 1.00 91.72 C
ATOM 8 O4' A A1239 8.326 96.253 62.839 1.00 91.14 O
ATOM 9 C3' A A1239 7.950 96.838 65.081 1.00 90.86 C
ATOM 10 O3' A A1239 8.025 97.907 66.020 1.00 90.21 O
ATOM 11 C2' A A1239 6.598 96.778 64.382 1.00 90.40 C
ATOM 12 O2' A A1239 6.090 98.052 64.029 1.00 89.63 O
ATOM 13 C1' A A1239 6.955 95.998 63.116 1.00 89.42 C
ATOM 14 N9 A A1239 6.780 94.552 63.279 1.00 87.08 N
ATOM 15 C8 A A1239 7.758 93.597 63.419 1.00 86.26 C
ATOM 16 N7 A A1239 7.296 92.380 63.544 1.00 85.36 N
ATOM 17 C5 A A1239 5.920 92.539 63.483 1.00 84.64 C
ATOM 18 C6 A A1239 4.864 91.622 63.551 1.00 83.84 C
ATOM 19 N6 A A1239 5.035 90.307 63.698 1.00 83.00 N
ATOM 20 N1 A A1239 3.607 92.105 63.462 1.00 84.00 N
ATOM 21 C2 A A1239 3.438 93.424 63.312 1.00 84.53 C
ATOM 22 N3 A A1239 4.351 94.386 63.231 1.00 84.95 N
ATOM 23 C4 A A1239 5.587 93.872 63.323 1.00 85.36 C
ATOM 24 P C A1240 7.354 97.739 67.473 1.00 88.97 P
ATOM 25 OP1 C A1240 7.340 99.072 68.132 1.00 88.56 O
ATOM 26 OP2 C A1240 7.988 96.583 68.162 1.00 89.70 O
ATOM 27 O5' C A1240 5.844 97.349 67.160 1.00 86.37 O
TER
ATOM 1 O3' C B1236 10.113 86.708 58.603 1.00 57.03 O
ATOM 2 P A B1237 10.087 86.564 60.198 1.00 57.89 P
ATOM 3 OP1 A B1237 11.241 85.719 60.577 1.00 55.33 O
ATOM 4 OP2 A B1237 8.719 86.173 60.622 1.00 59.47 O
ATOM 5 O5' A B1237 10.342 88.048 60.710 1.00 61.84 O
ATOM 6 C5' A B1237 11.631 88.673 60.569 1.00 65.97 C
ATOM 7 C4' A B1237 11.537 90.136 60.920 1.00 68.12 C
ATOM 8 O4' A B1237 10.643 90.788 59.987 1.00 67.43 O
ATOM 9 C3' A B1237 10.940 90.424 62.286 1.00 71.32 C
ATOM 10 O3' A B1237 11.939 90.349 63.293 1.00 77.77 O
ATOM 11 C2' A B1237 10.386 91.832 62.115 1.00 69.94 C
ATOM 12 O2' A B1237 11.367 92.839 62.262 1.00 70.79 O
ATOM 13 C1' A B1237 9.901 91.791 60.662 1.00 68.51 C
ATOM 14 N9 A B1237 8.484 91.467 60.531 1.00 66.90 N
ATOM 15 C8 A B1237 7.893 90.233 60.613 1.00 67.13 C
ATOM 16 N7 A B1237 6.594 90.260 60.468 1.00 67.21 N
ATOM 17 C5 A B1237 6.309 91.601 60.277 1.00 67.33 C
ATOM 18 C6 A B1237 5.104 92.287 60.075 1.00 68.78 C
ATOM 19 N6 A B1237 3.909 91.689 60.041 1.00 68.48 N
ATOM 20 N1 A B1237 5.166 93.628 59.911 1.00 69.73 N
ATOM 21 C2 A B1237 6.365 94.225 59.961 1.00 68.73 C
ATOM 22 N3 A B1237 7.565 93.686 60.155 1.00 67.77 N
ATOM 23 C4 A B1237 7.466 92.356 60.307 1.00 67.10 C
ATOM 24 P U B1238 11.599 89.690 64.721 1.00 83.12 P
ATOM 25 OP1 U B1238 11.666 88.215 64.554 1.00 81.65 O
ATOM 26 OP2 U B1238 10.355 90.318 65.249 1.00 82.53 O
ATOM 27 O5' U B1238 12.836 90.135 65.627 1.00 87.97 O
TER
ATOM 2 P A A1239 10.626 94.472 65.750 1.00100.64 P
ATOM 3 OP1 A A1239 10.151 95.426 66.789 1.00100.39 O
ATOM 4 OP2 A A1239 10.099 93.078 65.739 1.00100.71 O
ATOM 5 O5' A A1239 10.351 95.128 64.323 1.00 97.31 O
ATOM 6 C5' A A1239 10.329 96.560 64.151 1.00 93.91 C
ATOM 7 C4' A A1239 8.911 97.035 63.917 1.00 91.72 C
ATOM 8 O4' A A1239 8.326 96.253 62.839 1.00 91.14 O
ATOM 9 C3' A A1239 7.950 96.838 65.081 1.00 90.86 C
ATOM 10 O3' A A1239 8.025 97.907 66.020 1.00 90.21 O
ATOM 11 C2' A A1239 6.598 96.778 64.382 1.00 90.40 C
ATOM 12 O2' A A1239 6.090 98.052 64.029 1.00 89.63 O
ATOM 13 C1' A A1239 6.955 95.998 63.116 1.00 89.42 C
ATOM 14 N9 A A1239 6.780 94.552 63.279 1.00 87.08 N
ATOM 15 C8 A A1239 7.758 93.597 63.419 1.00 86.26 C
ATOM 16 N7 A A1239 7.296 92.380 63.544 1.00 85.36 N
ATOM 17 C5 A A1239 5.920 92.539 63.483 1.00 84.64 C
ATOM 18 C6 A A1239 4.864 91.622 63.551 1.00 83.84 C
ATOM 19 N6 A A1239 5.035 90.307 63.698 1.00 83.00 N
ATOM 20 N1 A A1239 3.607 92.105 63.462 1.00 84.00 N
ATOM 21 C2 A A1239 3.438 93.424 63.312 1.00 84.53 C
ATOM 22 N3 A A1239 4.351 94.386 63.231 1.00 84.95 N
ATOM 23 C4 A A1239 5.587 93.872 63.323 1.00 85.36 C
ATOM 24 P C A1240 7.354 97.739 67.473 1.00 88.97 P
ATOM 25 OP1 C A1240 7.340 99.072 68.132 1.00 88.56 O
ATOM 26 OP2 C A1240 7.988 96.583 68.162 1.00 89.70 O
ATOM 27 O5' C A1240 5.844 97.349 67.160 1.00 86.37 O
TER
ATOM 1 O3' C B1236 10.113 86.708 58.603 1.00 57.03 O
ATOM 2 P A B1237 10.087 86.564 60.198 1.00 57.89 P
ATOM 3 OP1 A B1237 11.241 85.719 60.577 1.00 55.33 O
ATOM 4 OP2 A B1237 8.719 86.173 60.622 1.00 59.47 O
ATOM 5 O5' A B1237 10.342 88.048 60.710 1.00 61.84 O
ATOM 6 C5' A B1237 11.631 88.673 60.569 1.00 65.97 C
ATOM 7 C4' A B1237 11.537 90.136 60.920 1.00 68.12 C
ATOM 8 O4' A B1237 10.643 90.788 59.987 1.00 67.43 O
ATOM 9 C3' A B1237 10.940 90.424 62.286 1.00 71.32 C
ATOM 10 O3' A B1237 11.939 90.349 63.293 1.00 77.77 O
ATOM 11 C2' A B1237 10.386 91.832 62.115 1.00 69.94 C
ATOM 12 O2' A B1237 11.367 92.839 62.262 1.00 70.79 O
ATOM 13 C1' A B1237 9.901 91.791 60.662 1.00 68.51 C
ATOM 14 N9 A B1237 8.484 91.467 60.531 1.00 66.90 N
ATOM 15 C8 A B1237 7.893 90.233 60.613 1.00 67.13 C
ATOM 16 N7 A B1237 6.594 90.260 60.468 1.00 67.21 N
ATOM 17 C5 A B1237 6.309 91.601 60.277 1.00 67.33 C
ATOM 18 C6 A B1237 5.104 92.287 60.075 1.00 68.78 C
ATOM 19 N6 A B1237 3.909 91.689 60.041 1.00 68.48 N
ATOM 20 N1 A B1237 5.166 93.628 59.911 1.00 69.73 N
ATOM 21 C2 A B1237 6.365 94.225 59.961 1.00 68.73 C
ATOM 22 N3 A B1237 7.565 93.686 60.155 1.00 67.77 N
ATOM 23 C4 A B1237 7.466 92.356 60.307 1.00 67.10 C
ATOM 24 P U B1238 11.599 89.690 64.721 1.00 83.12 P
ATOM 25 OP1 U B1238 11.666 88.215 64.554 1.00 81.65 O
ATOM 26 OP2 U B1238 10.355 90.318 65.249 1.00 82.53 O
ATOM 27 O5' U B1238 12.836 90.135 65.627 1.00 87.97 O
TER
Atoms:
OP1: (10.151,95.426,66.789)
OP2: (10.099,93.078,65.739)
C3': (7.950,96.838,65.081)
C1': (6.955,95.998,63.116)
C5': (10.329,96.560,64.151)
O4': (8.326,96.253,62.839)
C8: (7.758,93.597,63.419)
O2': (6.090,98.052,64.029)
C6: (4.864,91.622,63.551)
C5: (5.920,92.539,63.483)
C4: (5.587,93.872,63.323)
P: (10.626,94.472,65.750)
C4': (8.911,97.035,63.917)
C2': (6.598,96.778,64.382)
C2: (3.438,93.424,63.312)
N1: (3.607,92.105,63.462)
N3: (4.351,94.386,63.231)
N6: (5.035,90.307,63.698)
N7: (7.296,92.380,63.544)
N9: (6.780,94.552,63.279)
O5': (10.351,95.128,64.323)
O3': (8.025,97.907,66.020)
OP2: (10.099,93.078,65.739)
C3': (7.950,96.838,65.081)
C1': (6.955,95.998,63.116)
C5': (10.329,96.560,64.151)
O4': (8.326,96.253,62.839)
C8: (7.758,93.597,63.419)
O2': (6.090,98.052,64.029)
C6: (4.864,91.622,63.551)
C5: (5.920,92.539,63.483)
C4: (5.587,93.872,63.323)
P: (10.626,94.472,65.750)
C4': (8.911,97.035,63.917)
C2': (6.598,96.778,64.382)
C2: (3.438,93.424,63.312)
N1: (3.607,92.105,63.462)
N3: (4.351,94.386,63.231)
N6: (5.035,90.307,63.698)
N7: (7.296,92.380,63.544)
N9: (6.780,94.552,63.279)
O5': (10.351,95.128,64.323)
O3': (8.025,97.907,66.020)
OP1: (11.241,85.719,60.577)
OP2: (8.719,86.173,60.622)
C3': (10.940,90.424,62.286)
C1': (9.901,91.791,60.662)
C5': (11.631,88.673,60.569)
O4': (10.643,90.788,59.987)
C8: (7.893,90.233,60.613)
O2': (11.367,92.839,62.262)
C6: (5.104,92.287,60.075)
C5: (6.309,91.601,60.277)
C4: (7.466,92.356,60.307)
P: (10.087,86.564,60.198)
C4': (11.537,90.136,60.920)
C2': (10.386,91.832,62.115)
C2: (6.365,94.225,59.961)
N1: (5.166,93.628,59.911)
N3: (7.565,93.686,60.155)
N6: (3.909,91.689,60.041)
N7: (6.594,90.260,60.468)
N9: (8.484,91.467,60.531)
O5': (10.342,88.048,60.710)
O3': (11.939,90.349,63.293)
OP2: (8.719,86.173,60.622)
C3': (10.940,90.424,62.286)
C1': (9.901,91.791,60.662)
C5': (11.631,88.673,60.569)
O4': (10.643,90.788,59.987)
C8: (7.893,90.233,60.613)
O2': (11.367,92.839,62.262)
C6: (5.104,92.287,60.075)
C5: (6.309,91.601,60.277)
C4: (7.466,92.356,60.307)
P: (10.087,86.564,60.198)
C4': (11.537,90.136,60.920)
C2': (10.386,91.832,62.115)
C2: (6.365,94.225,59.961)
N1: (5.166,93.628,59.911)
N3: (7.565,93.686,60.155)
N6: (3.909,91.689,60.041)
N7: (6.594,90.260,60.468)
N9: (8.484,91.467,60.531)
O5': (10.342,88.048,60.710)
O3': (11.939,90.349,63.293)
Image (generated by PyMOL):