Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ8:01239:01237
Extra
PDB:
ATOM 1 O3' U A1238 12.166 94.393 65.631 1.00 87.01 O
ATOM 2 P A A1239 10.555 94.465 65.564 1.00 87.86 P
ATOM 3 OP1 A A1239 10.116 95.431 66.610 1.00 87.36 O
ATOM 4 OP2 A A1239 10.020 93.070 65.584 1.00 87.91 O
ATOM 5 O5' A A1239 10.230 95.118 64.146 1.00 84.64 O
ATOM 6 C5' A A1239 10.218 96.550 63.968 1.00 81.68 C
ATOM 7 C4' A A1239 8.800 97.043 63.779 1.00 79.81 C
ATOM 8 O4' A A1239 8.180 96.287 62.702 1.00 79.60 O
ATOM 9 C3' A A1239 7.869 96.836 64.965 1.00 79.33 C
ATOM 10 O3' A A1239 7.976 97.890 65.919 1.00 79.05 O
ATOM 11 C2' A A1239 6.496 96.784 64.304 1.00 78.85 C
ATOM 12 O2' A A1239 5.968 98.058 63.984 1.00 77.99 O
ATOM 13 C1' A A1239 6.818 96.019 63.019 1.00 78.06 C
ATOM 14 N9 A A1239 6.663 94.570 63.178 1.00 75.81 N
ATOM 15 C8 A A1239 7.656 93.631 63.334 1.00 74.91 C
ATOM 16 N7 A A1239 7.211 92.405 63.454 1.00 74.45 N
ATOM 17 C5 A A1239 5.833 92.542 63.370 1.00 73.53 C
ATOM 18 C6 A A1239 4.791 91.606 63.423 1.00 72.79 C
ATOM 19 N6 A A1239 4.985 90.294 63.572 1.00 71.92 N
ATOM 20 N1 A A1239 3.526 92.068 63.317 1.00 72.82 N
ATOM 21 C2 A A1239 3.337 93.386 63.165 1.00 73.58 C
ATOM 22 N3 A A1239 4.237 94.364 63.096 1.00 73.63 N
ATOM 23 C4 A A1239 5.481 93.870 63.204 1.00 73.92 C
ATOM 24 P C A1240 7.349 97.700 67.390 1.00 78.41 P
ATOM 25 OP1 C A1240 7.366 99.025 68.071 1.00 77.97 O
ATOM 26 OP2 C A1240 7.997 96.528 68.040 1.00 78.92 O
ATOM 27 O5' C A1240 5.830 97.322 67.113 1.00 75.41 O
TER
ATOM 1 O3' C B1236 9.942 86.601 58.471 1.00 51.85 O
ATOM 2 P A B1237 9.951 86.516 60.073 1.00 51.94 P
ATOM 3 OP1 A B1237 11.114 85.671 60.449 1.00 50.76 O
ATOM 4 OP2 A B1237 8.590 86.148 60.548 1.00 53.01 O
ATOM 5 O5' A B1237 10.226 88.018 60.519 1.00 53.82 O
ATOM 6 C5' A B1237 11.516 88.627 60.327 1.00 56.73 C
ATOM 7 C4' A B1237 11.467 90.072 60.749 1.00 58.73 C
ATOM 8 O4' A B1237 10.569 90.786 59.865 1.00 58.46 O
ATOM 9 C3' A B1237 10.903 90.302 62.140 1.00 61.07 C
ATOM 10 O3' A B1237 11.923 90.162 63.121 1.00 67.22 O
ATOM 11 C2' A B1237 10.355 91.721 62.046 1.00 59.65 C
ATOM 12 O2' A B1237 11.355 92.709 62.199 1.00 60.50 O
ATOM 13 C1' A B1237 9.835 91.747 60.604 1.00 57.78 C
ATOM 14 N9 A B1237 8.422 91.412 60.472 1.00 56.36 N
ATOM 15 C8 A B1237 7.846 90.169 60.567 1.00 55.96 C
ATOM 16 N7 A B1237 6.548 90.174 60.399 1.00 55.79 N
ATOM 17 C5 A B1237 6.246 91.509 60.184 1.00 56.32 C
ATOM 18 C6 A B1237 5.035 92.172 59.957 1.00 58.15 C
ATOM 19 N6 A B1237 3.850 91.553 59.915 1.00 57.91 N
ATOM 20 N1 A B1237 5.078 93.513 59.778 1.00 58.93 N
ATOM 21 C2 A B1237 6.267 94.130 59.837 1.00 57.28 C
ATOM 22 N3 A B1237 7.474 93.613 60.053 1.00 56.83 N
ATOM 23 C4 A B1237 7.393 92.283 60.220 1.00 56.56 C
ATOM 24 P U B1238 11.565 89.575 64.577 1.00 71.71 P
ATOM 25 OP1 U B1238 11.664 88.093 64.494 1.00 69.75 O
ATOM 26 OP2 U B1238 10.296 90.207 65.035 1.00 71.48 O
ATOM 27 O5' U B1238 12.770 90.094 65.489 1.00 76.08 O
TER
ATOM 2 P A A1239 10.555 94.465 65.564 1.00 87.86 P
ATOM 3 OP1 A A1239 10.116 95.431 66.610 1.00 87.36 O
ATOM 4 OP2 A A1239 10.020 93.070 65.584 1.00 87.91 O
ATOM 5 O5' A A1239 10.230 95.118 64.146 1.00 84.64 O
ATOM 6 C5' A A1239 10.218 96.550 63.968 1.00 81.68 C
ATOM 7 C4' A A1239 8.800 97.043 63.779 1.00 79.81 C
ATOM 8 O4' A A1239 8.180 96.287 62.702 1.00 79.60 O
ATOM 9 C3' A A1239 7.869 96.836 64.965 1.00 79.33 C
ATOM 10 O3' A A1239 7.976 97.890 65.919 1.00 79.05 O
ATOM 11 C2' A A1239 6.496 96.784 64.304 1.00 78.85 C
ATOM 12 O2' A A1239 5.968 98.058 63.984 1.00 77.99 O
ATOM 13 C1' A A1239 6.818 96.019 63.019 1.00 78.06 C
ATOM 14 N9 A A1239 6.663 94.570 63.178 1.00 75.81 N
ATOM 15 C8 A A1239 7.656 93.631 63.334 1.00 74.91 C
ATOM 16 N7 A A1239 7.211 92.405 63.454 1.00 74.45 N
ATOM 17 C5 A A1239 5.833 92.542 63.370 1.00 73.53 C
ATOM 18 C6 A A1239 4.791 91.606 63.423 1.00 72.79 C
ATOM 19 N6 A A1239 4.985 90.294 63.572 1.00 71.92 N
ATOM 20 N1 A A1239 3.526 92.068 63.317 1.00 72.82 N
ATOM 21 C2 A A1239 3.337 93.386 63.165 1.00 73.58 C
ATOM 22 N3 A A1239 4.237 94.364 63.096 1.00 73.63 N
ATOM 23 C4 A A1239 5.481 93.870 63.204 1.00 73.92 C
ATOM 24 P C A1240 7.349 97.700 67.390 1.00 78.41 P
ATOM 25 OP1 C A1240 7.366 99.025 68.071 1.00 77.97 O
ATOM 26 OP2 C A1240 7.997 96.528 68.040 1.00 78.92 O
ATOM 27 O5' C A1240 5.830 97.322 67.113 1.00 75.41 O
TER
ATOM 1 O3' C B1236 9.942 86.601 58.471 1.00 51.85 O
ATOM 2 P A B1237 9.951 86.516 60.073 1.00 51.94 P
ATOM 3 OP1 A B1237 11.114 85.671 60.449 1.00 50.76 O
ATOM 4 OP2 A B1237 8.590 86.148 60.548 1.00 53.01 O
ATOM 5 O5' A B1237 10.226 88.018 60.519 1.00 53.82 O
ATOM 6 C5' A B1237 11.516 88.627 60.327 1.00 56.73 C
ATOM 7 C4' A B1237 11.467 90.072 60.749 1.00 58.73 C
ATOM 8 O4' A B1237 10.569 90.786 59.865 1.00 58.46 O
ATOM 9 C3' A B1237 10.903 90.302 62.140 1.00 61.07 C
ATOM 10 O3' A B1237 11.923 90.162 63.121 1.00 67.22 O
ATOM 11 C2' A B1237 10.355 91.721 62.046 1.00 59.65 C
ATOM 12 O2' A B1237 11.355 92.709 62.199 1.00 60.50 O
ATOM 13 C1' A B1237 9.835 91.747 60.604 1.00 57.78 C
ATOM 14 N9 A B1237 8.422 91.412 60.472 1.00 56.36 N
ATOM 15 C8 A B1237 7.846 90.169 60.567 1.00 55.96 C
ATOM 16 N7 A B1237 6.548 90.174 60.399 1.00 55.79 N
ATOM 17 C5 A B1237 6.246 91.509 60.184 1.00 56.32 C
ATOM 18 C6 A B1237 5.035 92.172 59.957 1.00 58.15 C
ATOM 19 N6 A B1237 3.850 91.553 59.915 1.00 57.91 N
ATOM 20 N1 A B1237 5.078 93.513 59.778 1.00 58.93 N
ATOM 21 C2 A B1237 6.267 94.130 59.837 1.00 57.28 C
ATOM 22 N3 A B1237 7.474 93.613 60.053 1.00 56.83 N
ATOM 23 C4 A B1237 7.393 92.283 60.220 1.00 56.56 C
ATOM 24 P U B1238 11.565 89.575 64.577 1.00 71.71 P
ATOM 25 OP1 U B1238 11.664 88.093 64.494 1.00 69.75 O
ATOM 26 OP2 U B1238 10.296 90.207 65.035 1.00 71.48 O
ATOM 27 O5' U B1238 12.770 90.094 65.489 1.00 76.08 O
TER
Atoms:
OP1: (10.116,95.431,66.610)
OP2: (10.020,93.070,65.584)
C3': (7.869,96.836,64.965)
C1': (6.818,96.019,63.019)
C5': (10.218,96.550,63.968)
O4': (8.180,96.287,62.702)
C8: (7.656,93.631,63.334)
O2': (5.968,98.058,63.984)
C6: (4.791,91.606,63.423)
C5: (5.833,92.542,63.370)
C4: (5.481,93.870,63.204)
P: (10.555,94.465,65.564)
C4': (8.800,97.043,63.779)
C2': (6.496,96.784,64.304)
C2: (3.337,93.386,63.165)
N1: (3.526,92.068,63.317)
N3: (4.237,94.364,63.096)
N6: (4.985,90.294,63.572)
N7: (7.211,92.405,63.454)
N9: (6.663,94.570,63.178)
O5': (10.230,95.118,64.146)
O3': (7.976,97.890,65.919)
OP2: (10.020,93.070,65.584)
C3': (7.869,96.836,64.965)
C1': (6.818,96.019,63.019)
C5': (10.218,96.550,63.968)
O4': (8.180,96.287,62.702)
C8: (7.656,93.631,63.334)
O2': (5.968,98.058,63.984)
C6: (4.791,91.606,63.423)
C5: (5.833,92.542,63.370)
C4: (5.481,93.870,63.204)
P: (10.555,94.465,65.564)
C4': (8.800,97.043,63.779)
C2': (6.496,96.784,64.304)
C2: (3.337,93.386,63.165)
N1: (3.526,92.068,63.317)
N3: (4.237,94.364,63.096)
N6: (4.985,90.294,63.572)
N7: (7.211,92.405,63.454)
N9: (6.663,94.570,63.178)
O5': (10.230,95.118,64.146)
O3': (7.976,97.890,65.919)
OP1: (11.114,85.671,60.449)
OP2: (8.590,86.148,60.548)
C3': (10.903,90.302,62.140)
C1': (9.835,91.747,60.604)
C5': (11.516,88.627,60.327)
O4': (10.569,90.786,59.865)
C8: (7.846,90.169,60.567)
O2': (11.355,92.709,62.199)
C6: (5.035,92.172,59.957)
C5: (6.246,91.509,60.184)
C4: (7.393,92.283,60.220)
P: (9.951,86.516,60.073)
C4': (11.467,90.072,60.749)
C2': (10.355,91.721,62.046)
C2: (6.267,94.130,59.837)
N1: (5.078,93.513,59.778)
N3: (7.474,93.613,60.053)
N6: (3.850,91.553,59.915)
N7: (6.548,90.174,60.399)
N9: (8.422,91.412,60.472)
O5': (10.226,88.018,60.519)
O3': (11.923,90.162,63.121)
OP2: (8.590,86.148,60.548)
C3': (10.903,90.302,62.140)
C1': (9.835,91.747,60.604)
C5': (11.516,88.627,60.327)
O4': (10.569,90.786,59.865)
C8: (7.846,90.169,60.567)
O2': (11.355,92.709,62.199)
C6: (5.035,92.172,59.957)
C5: (6.246,91.509,60.184)
C4: (7.393,92.283,60.220)
P: (9.951,86.516,60.073)
C4': (11.467,90.072,60.749)
C2': (10.355,91.721,62.046)
C2: (6.267,94.130,59.837)
N1: (5.078,93.513,59.778)
N3: (7.474,93.613,60.053)
N6: (3.850,91.553,59.915)
N7: (6.548,90.174,60.399)
N9: (8.422,91.412,60.472)
O5': (10.226,88.018,60.519)
O3': (11.923,90.162,63.121)
Image (generated by PyMOL):