Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G28:G29
Extra
PDB:
ATOM 1 O3' G A 27 -0.463 -30.040 -4.061 1.00 15.05 O
ATOM 2 P C A 28 -0.516 -29.488 -2.550 1.00 18.91 P
ATOM 3 OP1 C A 28 -0.327 -28.021 -2.653 1.00 15.79 O
ATOM 4 OP2 C A 28 0.406 -30.295 -1.696 1.00 13.95 O
ATOM 5 O5' C A 28 -2.022 -29.769 -2.122 1.00 15.46 O
ATOM 6 C5' C A 28 -3.071 -29.065 -2.766 1.00 17.09 C
ATOM 7 C4' C A 28 -4.416 -29.506 -2.248 1.00 17.90 C
ATOM 8 O4' C A 28 -4.714 -30.852 -2.684 1.00 17.93 O
ATOM 9 C3' C A 28 -4.584 -29.568 -0.739 1.00 18.54 C
ATOM 10 O3' C A 28 -4.827 -28.279 -0.192 1.00 18.69 O
ATOM 11 C2' C A 28 -5.817 -30.445 -0.607 1.00 19.47 C
ATOM 12 O2' C A 28 -6.996 -29.708 -0.850 1.00 22.68 O
ATOM 13 C1' C A 28 -5.602 -31.446 -1.753 1.00 19.00 C
ATOM 14 N1 C A 28 -5.009 -32.694 -1.272 1.00 19.07 N
ATOM 15 C2 C A 28 -5.859 -33.717 -0.880 1.00 19.08 C
ATOM 16 O2 C A 28 -7.079 -33.566 -1.037 1.00 21.04 O
ATOM 17 N3 C A 28 -5.336 -34.845 -0.350 1.00 19.34 N
ATOM 18 C4 C A 28 -4.013 -34.972 -0.234 1.00 19.64 C
ATOM 19 N4 C A 28 -3.537 -36.088 0.320 1.00 21.79 N
ATOM 20 C5 C A 28 -3.120 -33.958 -0.673 1.00 19.04 C
ATOM 21 C6 C A 28 -3.656 -32.844 -1.181 1.00 19.00 C
ATOM 22 P G A 29 -4.442 -27.969 1.341 1.00 23.20 P
ATOM 23 OP1 G A 29 -5.510 -28.480 2.251 1.00 19.85 O
ATOM 24 OP2 G A 29 -4.067 -26.535 1.387 1.00 21.96 O
ATOM 25 O5' G A 29 -3.130 -28.834 1.602 1.00 20.70 O
TER
ATOM 1 O3' C B 28 -4.827 -28.279 -0.192 1.00 18.69 O
ATOM 2 P G B 29 -4.442 -27.969 1.341 1.00 23.20 P
ATOM 3 OP1 G B 29 -5.510 -28.480 2.251 1.00 19.85 O
ATOM 4 OP2 G B 29 -4.067 -26.535 1.387 1.00 21.96 O
ATOM 5 O5' G B 29 -3.130 -28.834 1.602 1.00 20.70 O
ATOM 6 C5' G B 29 -2.072 -28.322 2.398 1.00 18.21 C
ATOM 7 C4' G B 29 -0.940 -29.305 2.435 1.00 18.17 C
ATOM 8 O4' G B 29 -1.398 -30.503 3.110 1.00 17.57 O
ATOM 9 C3' G B 29 -0.446 -29.763 1.070 1.00 19.98 C
ATOM 10 O3' G B 29 0.920 -30.139 1.180 1.00 23.62 O
ATOM 11 C2' G B 29 -1.278 -31.014 0.826 1.00 18.79 C
ATOM 12 O2' G B 29 -0.629 -31.896 -0.059 1.00 19.33 O
ATOM 13 C1' G B 29 -1.327 -31.609 2.232 1.00 16.96 C
ATOM 14 N9 G B 29 -2.493 -32.445 2.490 1.00 13.74 N
ATOM 15 C8 G B 29 -3.803 -32.074 2.349 1.00 14.64 C
ATOM 16 N7 G B 29 -4.639 -33.015 2.696 1.00 14.33 N
ATOM 17 C5 G B 29 -3.830 -34.073 3.077 1.00 11.09 C
ATOM 18 C6 G B 29 -4.174 -35.356 3.553 1.00 12.80 C
ATOM 19 O6 G B 29 -5.300 -35.831 3.749 1.00 18.54 O
ATOM 20 N1 G B 29 -3.050 -36.121 3.818 1.00 13.28 N
ATOM 21 C2 G B 29 -1.764 -35.706 3.648 1.00 13.21 C
ATOM 22 N2 G B 29 -0.820 -36.605 3.944 1.00 11.08 N
ATOM 23 N3 G B 29 -1.427 -34.503 3.213 1.00 14.63 N
ATOM 24 C4 G B 29 -2.504 -33.744 2.948 1.00 11.24 C
ATOM 25 P A B 30 2.072 -29.126 0.711 1.00 24.02 P
ATOM 26 OP1 A B 30 1.803 -28.635 -0.662 1.00 22.81 O
ATOM 27 OP2 A B 30 3.351 -29.809 1.024 1.00 21.77 O
ATOM 28 O5' A B 30 1.938 -27.905 1.714 1.00 24.73 O
TER
ATOM 2 P C A 28 -0.516 -29.488 -2.550 1.00 18.91 P
ATOM 3 OP1 C A 28 -0.327 -28.021 -2.653 1.00 15.79 O
ATOM 4 OP2 C A 28 0.406 -30.295 -1.696 1.00 13.95 O
ATOM 5 O5' C A 28 -2.022 -29.769 -2.122 1.00 15.46 O
ATOM 6 C5' C A 28 -3.071 -29.065 -2.766 1.00 17.09 C
ATOM 7 C4' C A 28 -4.416 -29.506 -2.248 1.00 17.90 C
ATOM 8 O4' C A 28 -4.714 -30.852 -2.684 1.00 17.93 O
ATOM 9 C3' C A 28 -4.584 -29.568 -0.739 1.00 18.54 C
ATOM 10 O3' C A 28 -4.827 -28.279 -0.192 1.00 18.69 O
ATOM 11 C2' C A 28 -5.817 -30.445 -0.607 1.00 19.47 C
ATOM 12 O2' C A 28 -6.996 -29.708 -0.850 1.00 22.68 O
ATOM 13 C1' C A 28 -5.602 -31.446 -1.753 1.00 19.00 C
ATOM 14 N1 C A 28 -5.009 -32.694 -1.272 1.00 19.07 N
ATOM 15 C2 C A 28 -5.859 -33.717 -0.880 1.00 19.08 C
ATOM 16 O2 C A 28 -7.079 -33.566 -1.037 1.00 21.04 O
ATOM 17 N3 C A 28 -5.336 -34.845 -0.350 1.00 19.34 N
ATOM 18 C4 C A 28 -4.013 -34.972 -0.234 1.00 19.64 C
ATOM 19 N4 C A 28 -3.537 -36.088 0.320 1.00 21.79 N
ATOM 20 C5 C A 28 -3.120 -33.958 -0.673 1.00 19.04 C
ATOM 21 C6 C A 28 -3.656 -32.844 -1.181 1.00 19.00 C
ATOM 22 P G A 29 -4.442 -27.969 1.341 1.00 23.20 P
ATOM 23 OP1 G A 29 -5.510 -28.480 2.251 1.00 19.85 O
ATOM 24 OP2 G A 29 -4.067 -26.535 1.387 1.00 21.96 O
ATOM 25 O5' G A 29 -3.130 -28.834 1.602 1.00 20.70 O
TER
ATOM 1 O3' C B 28 -4.827 -28.279 -0.192 1.00 18.69 O
ATOM 2 P G B 29 -4.442 -27.969 1.341 1.00 23.20 P
ATOM 3 OP1 G B 29 -5.510 -28.480 2.251 1.00 19.85 O
ATOM 4 OP2 G B 29 -4.067 -26.535 1.387 1.00 21.96 O
ATOM 5 O5' G B 29 -3.130 -28.834 1.602 1.00 20.70 O
ATOM 6 C5' G B 29 -2.072 -28.322 2.398 1.00 18.21 C
ATOM 7 C4' G B 29 -0.940 -29.305 2.435 1.00 18.17 C
ATOM 8 O4' G B 29 -1.398 -30.503 3.110 1.00 17.57 O
ATOM 9 C3' G B 29 -0.446 -29.763 1.070 1.00 19.98 C
ATOM 10 O3' G B 29 0.920 -30.139 1.180 1.00 23.62 O
ATOM 11 C2' G B 29 -1.278 -31.014 0.826 1.00 18.79 C
ATOM 12 O2' G B 29 -0.629 -31.896 -0.059 1.00 19.33 O
ATOM 13 C1' G B 29 -1.327 -31.609 2.232 1.00 16.96 C
ATOM 14 N9 G B 29 -2.493 -32.445 2.490 1.00 13.74 N
ATOM 15 C8 G B 29 -3.803 -32.074 2.349 1.00 14.64 C
ATOM 16 N7 G B 29 -4.639 -33.015 2.696 1.00 14.33 N
ATOM 17 C5 G B 29 -3.830 -34.073 3.077 1.00 11.09 C
ATOM 18 C6 G B 29 -4.174 -35.356 3.553 1.00 12.80 C
ATOM 19 O6 G B 29 -5.300 -35.831 3.749 1.00 18.54 O
ATOM 20 N1 G B 29 -3.050 -36.121 3.818 1.00 13.28 N
ATOM 21 C2 G B 29 -1.764 -35.706 3.648 1.00 13.21 C
ATOM 22 N2 G B 29 -0.820 -36.605 3.944 1.00 11.08 N
ATOM 23 N3 G B 29 -1.427 -34.503 3.213 1.00 14.63 N
ATOM 24 C4 G B 29 -2.504 -33.744 2.948 1.00 11.24 C
ATOM 25 P A B 30 2.072 -29.126 0.711 1.00 24.02 P
ATOM 26 OP1 A B 30 1.803 -28.635 -0.662 1.00 22.81 O
ATOM 27 OP2 A B 30 3.351 -29.809 1.024 1.00 21.77 O
ATOM 28 O5' A B 30 1.938 -27.905 1.714 1.00 24.73 O
TER
Atoms:
C2: (-5.859,-33.717,-0.880)
OP1: (-0.327,-28.021,-2.653)
OP2: (0.406,-30.295,-1.696)
C4: (-4.013,-34.972,-0.234)
O5': (-2.022,-29.769,-2.122)
C3': (-4.584,-29.568,-0.739)
C1': (-5.602,-31.446,-1.753)
O4': (-4.714,-30.852,-2.684)
C5': (-3.071,-29.065,-2.766)
P: (-0.516,-29.488,-2.550)
O2: (-7.079,-33.566,-1.037)
C4': (-4.416,-29.506,-2.248)
C2': (-5.817,-30.445,-0.607)
O2': (-6.996,-29.708,-0.850)
N1: (-5.009,-32.694,-1.272)
N3: (-5.336,-34.845,-0.350)
N4: (-3.537,-36.088,0.320)
C6: (-3.656,-32.844,-1.181)
C5: (-3.120,-33.958,-0.673)
O3': (-4.827,-28.279,-0.192)
OP1: (-0.327,-28.021,-2.653)
OP2: (0.406,-30.295,-1.696)
C4: (-4.013,-34.972,-0.234)
O5': (-2.022,-29.769,-2.122)
C3': (-4.584,-29.568,-0.739)
C1': (-5.602,-31.446,-1.753)
O4': (-4.714,-30.852,-2.684)
C5': (-3.071,-29.065,-2.766)
P: (-0.516,-29.488,-2.550)
O2: (-7.079,-33.566,-1.037)
C4': (-4.416,-29.506,-2.248)
C2': (-5.817,-30.445,-0.607)
O2': (-6.996,-29.708,-0.850)
N1: (-5.009,-32.694,-1.272)
N3: (-5.336,-34.845,-0.350)
N4: (-3.537,-36.088,0.320)
C6: (-3.656,-32.844,-1.181)
C5: (-3.120,-33.958,-0.673)
O3': (-4.827,-28.279,-0.192)
OP1: (-5.510,-28.480,2.251)
OP2: (-4.067,-26.535,1.387)
C3': (-0.446,-29.763,1.070)
C1': (-1.327,-31.609,2.232)
C5': (-2.072,-28.322,2.398)
O6: (-5.300,-35.831,3.749)
O4': (-1.398,-30.503,3.110)
C8: (-3.803,-32.074,2.349)
C2: (-1.764,-35.706,3.648)
C6: (-4.174,-35.356,3.553)
C5: (-3.830,-34.073,3.077)
C4: (-2.504,-33.744,2.948)
P: (-4.442,-27.969,1.341)
C4': (-0.940,-29.305,2.435)
C2': (-1.278,-31.014,0.826)
O2': (-0.629,-31.896,-0.059)
N1: (-3.050,-36.121,3.818)
N2: (-0.820,-36.605,3.944)
N3: (-1.427,-34.503,3.213)
N7: (-4.639,-33.015,2.696)
N9: (-2.493,-32.445,2.490)
O5': (-3.130,-28.834,1.602)
O3': (0.920,-30.139,1.180)
OP2: (-4.067,-26.535,1.387)
C3': (-0.446,-29.763,1.070)
C1': (-1.327,-31.609,2.232)
C5': (-2.072,-28.322,2.398)
O6: (-5.300,-35.831,3.749)
O4': (-1.398,-30.503,3.110)
C8: (-3.803,-32.074,2.349)
C2: (-1.764,-35.706,3.648)
C6: (-4.174,-35.356,3.553)
C5: (-3.830,-34.073,3.077)
C4: (-2.504,-33.744,2.948)
P: (-4.442,-27.969,1.341)
C4': (-0.940,-29.305,2.435)
C2': (-1.278,-31.014,0.826)
O2': (-0.629,-31.896,-0.059)
N1: (-3.050,-36.121,3.818)
N2: (-0.820,-36.605,3.944)
N3: (-1.427,-34.503,3.213)
N7: (-4.639,-33.015,2.696)
N9: (-2.493,-32.445,2.490)
O5': (-3.130,-28.834,1.602)
O3': (0.920,-30.139,1.180)
Image (generated by PyMOL):