Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VQF:A1040:A1041
Extra
PDB:
ATOM 1 O3' U A1039 208.882 124.606 -3.201 1.00 70.69 O
ATOM 2 P C A1040 209.314 125.983 -3.897 1.00 68.44 P
ATOM 3 OP1 C A1040 210.562 125.681 -4.656 1.00 67.35 O
ATOM 4 OP2 C A1040 209.312 127.054 -2.877 1.00 69.98 O
ATOM 5 O5' C A1040 208.130 126.298 -4.920 1.00 67.45 O
ATOM 6 C5' C A1040 208.143 125.780 -6.267 1.00 63.93 C
ATOM 7 C4' C A1040 206.732 125.522 -6.753 1.00 59.03 C
ATOM 8 O4' C A1040 206.084 124.655 -5.775 1.00 59.70 O
ATOM 9 C3' C A1040 205.824 126.738 -6.906 1.00 55.93 C
ATOM 10 O3' C A1040 205.920 127.399 -8.193 1.00 41.82 O
ATOM 11 C2' C A1040 204.443 126.133 -6.663 1.00 58.76 C
ATOM 12 O2' C A1040 203.941 125.571 -7.850 1.00 61.58 O
ATOM 13 C1' C A1040 204.728 125.029 -5.623 1.00 62.63 C
ATOM 14 N1 C A1040 204.541 125.448 -4.208 1.00 70.45 N
ATOM 15 C2 C A1040 203.232 125.620 -3.674 1.00 74.81 C
ATOM 16 O2 C A1040 202.239 125.338 -4.371 1.00 78.15 O
ATOM 17 N3 C A1040 203.095 126.091 -2.402 1.00 76.75 N
ATOM 18 C4 C A1040 204.182 126.374 -1.669 1.00 77.20 C
ATOM 19 N4 C A1040 204.010 126.872 -0.434 1.00 76.45 N
ATOM 20 C5 C A1040 205.500 126.168 -2.167 1.00 76.77 C
ATOM 21 C6 C A1040 205.632 125.704 -3.423 1.00 74.19 C
TER
ATOM 1 P G B1041 205.324 127.558 -8.590 1.00 49.17 P
ATOM 2 OP1 G B1041 203.885 127.860 -8.414 1.00 85.67 O
ATOM 3 OP2 G B1041 205.904 127.550 -9.956 1.00 85.67 O
ATOM 4 O5' G B1041 206.199 128.523 -7.664 1.00 49.17 O
ATOM 5 C5' G B1041 206.328 129.951 -7.922 1.00 49.17 C
ATOM 6 C4' G B1041 206.600 130.685 -6.619 1.00 49.17 C
ATOM 7 O4' G B1041 205.355 130.842 -5.894 1.00 49.17 O
ATOM 8 C3' G B1041 207.556 129.945 -5.673 1.00 49.17 C
ATOM 9 O3' G B1041 208.260 130.837 -4.797 1.00 49.17 O
ATOM 10 C2' G B1041 206.595 129.187 -4.766 1.00 49.17 C
ATOM 11 O2' G B1041 207.166 128.879 -3.514 1.00 49.17 O
ATOM 12 C1' G B1041 205.458 130.198 -4.641 1.00 49.17 C
ATOM 13 N9 G B1041 204.151 129.652 -4.292 1.00 85.67 N
ATOM 14 C8 G B1041 203.358 128.811 -5.031 1.00 85.67 C
ATOM 15 N7 G B1041 202.224 128.536 -4.447 1.00 85.67 N
ATOM 16 C5 G B1041 202.280 129.232 -3.248 1.00 85.67 C
ATOM 17 C6 G B1041 201.335 129.334 -2.190 1.00 85.67 C
ATOM 18 O6 G B1041 200.218 128.811 -2.093 1.00 85.67 O
ATOM 19 N1 G B1041 201.804 130.151 -1.169 1.00 85.67 N
ATOM 20 C2 G B1041 203.018 130.789 -1.165 1.00 85.67 C
ATOM 21 N2 G B1041 203.295 131.530 -0.100 1.00 85.67 N
ATOM 22 N3 G B1041 203.897 130.705 -2.137 1.00 85.67 N
ATOM 23 C4 G B1041 203.467 129.917 -3.139 1.00 85.67 C
TER
ATOM 2 P C A1040 209.314 125.983 -3.897 1.00 68.44 P
ATOM 3 OP1 C A1040 210.562 125.681 -4.656 1.00 67.35 O
ATOM 4 OP2 C A1040 209.312 127.054 -2.877 1.00 69.98 O
ATOM 5 O5' C A1040 208.130 126.298 -4.920 1.00 67.45 O
ATOM 6 C5' C A1040 208.143 125.780 -6.267 1.00 63.93 C
ATOM 7 C4' C A1040 206.732 125.522 -6.753 1.00 59.03 C
ATOM 8 O4' C A1040 206.084 124.655 -5.775 1.00 59.70 O
ATOM 9 C3' C A1040 205.824 126.738 -6.906 1.00 55.93 C
ATOM 10 O3' C A1040 205.920 127.399 -8.193 1.00 41.82 O
ATOM 11 C2' C A1040 204.443 126.133 -6.663 1.00 58.76 C
ATOM 12 O2' C A1040 203.941 125.571 -7.850 1.00 61.58 O
ATOM 13 C1' C A1040 204.728 125.029 -5.623 1.00 62.63 C
ATOM 14 N1 C A1040 204.541 125.448 -4.208 1.00 70.45 N
ATOM 15 C2 C A1040 203.232 125.620 -3.674 1.00 74.81 C
ATOM 16 O2 C A1040 202.239 125.338 -4.371 1.00 78.15 O
ATOM 17 N3 C A1040 203.095 126.091 -2.402 1.00 76.75 N
ATOM 18 C4 C A1040 204.182 126.374 -1.669 1.00 77.20 C
ATOM 19 N4 C A1040 204.010 126.872 -0.434 1.00 76.45 N
ATOM 20 C5 C A1040 205.500 126.168 -2.167 1.00 76.77 C
ATOM 21 C6 C A1040 205.632 125.704 -3.423 1.00 74.19 C
TER
ATOM 1 P G B1041 205.324 127.558 -8.590 1.00 49.17 P
ATOM 2 OP1 G B1041 203.885 127.860 -8.414 1.00 85.67 O
ATOM 3 OP2 G B1041 205.904 127.550 -9.956 1.00 85.67 O
ATOM 4 O5' G B1041 206.199 128.523 -7.664 1.00 49.17 O
ATOM 5 C5' G B1041 206.328 129.951 -7.922 1.00 49.17 C
ATOM 6 C4' G B1041 206.600 130.685 -6.619 1.00 49.17 C
ATOM 7 O4' G B1041 205.355 130.842 -5.894 1.00 49.17 O
ATOM 8 C3' G B1041 207.556 129.945 -5.673 1.00 49.17 C
ATOM 9 O3' G B1041 208.260 130.837 -4.797 1.00 49.17 O
ATOM 10 C2' G B1041 206.595 129.187 -4.766 1.00 49.17 C
ATOM 11 O2' G B1041 207.166 128.879 -3.514 1.00 49.17 O
ATOM 12 C1' G B1041 205.458 130.198 -4.641 1.00 49.17 C
ATOM 13 N9 G B1041 204.151 129.652 -4.292 1.00 85.67 N
ATOM 14 C8 G B1041 203.358 128.811 -5.031 1.00 85.67 C
ATOM 15 N7 G B1041 202.224 128.536 -4.447 1.00 85.67 N
ATOM 16 C5 G B1041 202.280 129.232 -3.248 1.00 85.67 C
ATOM 17 C6 G B1041 201.335 129.334 -2.190 1.00 85.67 C
ATOM 18 O6 G B1041 200.218 128.811 -2.093 1.00 85.67 O
ATOM 19 N1 G B1041 201.804 130.151 -1.169 1.00 85.67 N
ATOM 20 C2 G B1041 203.018 130.789 -1.165 1.00 85.67 C
ATOM 21 N2 G B1041 203.295 131.530 -0.100 1.00 85.67 N
ATOM 22 N3 G B1041 203.897 130.705 -2.137 1.00 85.67 N
ATOM 23 C4 G B1041 203.467 129.917 -3.139 1.00 85.67 C
TER
Atoms:
C2: (203.232,125.620,-3.674)
OP1: (210.562,125.681,-4.656)
OP2: (209.312,127.054,-2.877)
C4: (204.182,126.374,-1.669)
O5': (208.130,126.298,-4.920)
C3': (205.824,126.738,-6.906)
C1': (204.728,125.029,-5.623)
O4': (206.084,124.655,-5.775)
C5': (208.143,125.780,-6.267)
P: (209.314,125.983,-3.897)
O2: (202.239,125.338,-4.371)
C4': (206.732,125.522,-6.753)
C2': (204.443,126.133,-6.663)
O2': (203.941,125.571,-7.850)
N1: (204.541,125.448,-4.208)
N3: (203.095,126.091,-2.402)
N4: (204.010,126.872,-0.434)
C6: (205.632,125.704,-3.423)
C5: (205.500,126.168,-2.167)
O3': (205.920,127.399,-8.193)
OP1: (210.562,125.681,-4.656)
OP2: (209.312,127.054,-2.877)
C4: (204.182,126.374,-1.669)
O5': (208.130,126.298,-4.920)
C3': (205.824,126.738,-6.906)
C1': (204.728,125.029,-5.623)
O4': (206.084,124.655,-5.775)
C5': (208.143,125.780,-6.267)
P: (209.314,125.983,-3.897)
O2: (202.239,125.338,-4.371)
C4': (206.732,125.522,-6.753)
C2': (204.443,126.133,-6.663)
O2': (203.941,125.571,-7.850)
N1: (204.541,125.448,-4.208)
N3: (203.095,126.091,-2.402)
N4: (204.010,126.872,-0.434)
C6: (205.632,125.704,-3.423)
C5: (205.500,126.168,-2.167)
O3': (205.920,127.399,-8.193)
OP1: (203.885,127.860,-8.414)
OP2: (205.904,127.550,-9.956)
C3': (207.556,129.945,-5.673)
C1': (205.458,130.198,-4.641)
C5': (206.328,129.951,-7.922)
O6: (200.218,128.811,-2.093)
O4': (205.355,130.842,-5.894)
C8: (203.358,128.811,-5.031)
C2: (203.018,130.789,-1.165)
C6: (201.335,129.334,-2.190)
C5: (202.280,129.232,-3.248)
C4: (203.467,129.917,-3.139)
P: (205.324,127.558,-8.590)
C4': (206.600,130.685,-6.619)
C2': (206.595,129.187,-4.766)
O2': (207.166,128.879,-3.514)
N1: (201.804,130.151,-1.169)
N2: (203.295,131.530,-0.100)
N3: (203.897,130.705,-2.137)
N7: (202.224,128.536,-4.447)
N9: (204.151,129.652,-4.292)
O5': (206.199,128.523,-7.664)
O3': (208.260,130.837,-4.797)
OP2: (205.904,127.550,-9.956)
C3': (207.556,129.945,-5.673)
C1': (205.458,130.198,-4.641)
C5': (206.328,129.951,-7.922)
O6: (200.218,128.811,-2.093)
O4': (205.355,130.842,-5.894)
C8: (203.358,128.811,-5.031)
C2: (203.018,130.789,-1.165)
C6: (201.335,129.334,-2.190)
C5: (202.280,129.232,-3.248)
C4: (203.467,129.917,-3.139)
P: (205.324,127.558,-8.590)
C4': (206.600,130.685,-6.619)
C2': (206.595,129.187,-4.766)
O2': (207.166,128.879,-3.514)
N1: (201.804,130.151,-1.169)
N2: (203.295,131.530,-0.100)
N3: (203.897,130.705,-2.137)
N7: (202.224,128.536,-4.447)
N9: (204.151,129.652,-4.292)
O5': (206.199,128.523,-7.664)
O3': (208.260,130.837,-4.797)
Image (generated by PyMOL):