Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0583:0582
Extra
PDB:
ATOM 1 O3' C A 582 -0.675 107.991 91.799 1.00 53.08 O
ATOM 2 P U A 583 -1.799 109.046 91.350 1.00 53.44 P
ATOM 3 OP1 U A 583 -1.248 109.846 90.230 1.00 52.75 O
ATOM 4 OP2 U A 583 -2.301 109.737 92.558 1.00 53.97 O
ATOM 5 O5' U A 583 -2.957 108.130 90.757 1.00 53.30 O
ATOM 6 C5' U A 583 -2.792 107.485 89.487 1.00 56.20 C
ATOM 7 C4' U A 583 -4.042 106.735 89.116 1.00 59.40 C
ATOM 8 O4' U A 583 -4.257 105.663 90.071 1.00 60.75 O
ATOM 9 C3' U A 583 -5.333 107.533 89.181 1.00 60.89 C
ATOM 10 O3' U A 583 -5.546 108.350 88.046 1.00 62.52 O
ATOM 11 C2' U A 583 -6.366 106.432 89.316 1.00 61.33 C
ATOM 12 O2' U A 583 -6.609 105.768 88.093 1.00 60.48 O
ATOM 13 C1' U A 583 -5.649 105.497 90.292 1.00 62.03 C
ATOM 14 N1 U A 583 -5.944 105.865 91.687 1.00 63.55 N
ATOM 15 C2 U A 583 -6.913 105.142 92.349 1.00 64.15 C
ATOM 16 O2 U A 583 -7.502 104.207 91.844 1.00 67.13 O
ATOM 17 N3 U A 583 -7.168 105.552 93.631 1.00 64.18 N
ATOM 18 C4 U A 583 -6.564 106.581 94.308 1.00 64.69 C
ATOM 19 O4 U A 583 -6.877 106.798 95.478 1.00 66.00 O
ATOM 20 C5 U A 583 -5.565 107.279 93.562 1.00 65.24 C
ATOM 21 C6 U A 583 -5.292 106.906 92.311 1.00 64.38 C
ATOM 22 P C A 584 -6.359 109.728 88.208 1.00 64.55 P
ATOM 23 OP1 C A 584 -6.095 110.545 86.991 1.00 64.70 O
ATOM 24 OP2 C A 584 -6.108 110.315 89.556 1.00 62.30 O
ATOM 25 O5' C A 584 -7.877 109.256 88.167 1.00 66.82 O
TER
ATOM 1 O3' A B 581 0.527 107.298 97.811 1.00 63.21 O
ATOM 2 P C B 582 -0.530 108.238 97.052 1.00 60.27 P
ATOM 3 OP1 C B 582 0.052 109.590 96.910 1.00 60.03 O
ATOM 4 OP2 C B 582 -1.836 108.077 97.724 1.00 63.76 O
ATOM 5 O5' C B 582 -0.649 107.588 95.606 1.00 58.88 O
ATOM 6 C5' C B 582 0.492 107.485 94.755 1.00 55.41 C
ATOM 7 C4' C B 582 0.191 106.583 93.589 1.00 54.49 C
ATOM 8 O4' C B 582 -0.155 105.263 94.082 1.00 55.13 O
ATOM 9 C3' C B 582 -1.001 106.971 92.734 1.00 53.38 C
ATOM 10 O3' C B 582 -0.675 107.991 91.799 1.00 53.08 O
ATOM 11 C2' C B 582 -1.338 105.646 92.065 1.00 54.15 C
ATOM 12 O2' C B 582 -0.434 105.314 91.028 1.00 52.36 O
ATOM 13 C1' C B 582 -1.131 104.676 93.230 1.00 54.96 C
ATOM 14 N1 C B 582 -2.367 104.454 94.011 1.00 56.91 N
ATOM 15 C2 C B 582 -3.276 103.453 93.596 1.00 58.54 C
ATOM 16 O2 C B 582 -2.990 102.730 92.620 1.00 58.64 O
ATOM 17 N3 C B 582 -4.440 103.301 94.279 1.00 58.42 N
ATOM 18 C4 C B 582 -4.704 104.082 95.333 1.00 56.60 C
ATOM 19 N4 C B 582 -5.878 103.929 95.949 1.00 55.58 N
ATOM 20 C5 C B 582 -3.781 105.064 95.797 1.00 54.95 C
ATOM 21 C6 C B 582 -2.643 105.218 95.115 1.00 55.81 C
ATOM 22 P U B 583 -1.799 109.046 91.350 1.00 53.44 P
ATOM 23 OP1 U B 583 -1.248 109.846 90.230 1.00 52.75 O
ATOM 24 OP2 U B 583 -2.301 109.737 92.558 1.00 53.97 O
ATOM 25 O5' U B 583 -2.957 108.130 90.757 1.00 53.30 O
TER
ATOM 2 P U A 583 -1.799 109.046 91.350 1.00 53.44 P
ATOM 3 OP1 U A 583 -1.248 109.846 90.230 1.00 52.75 O
ATOM 4 OP2 U A 583 -2.301 109.737 92.558 1.00 53.97 O
ATOM 5 O5' U A 583 -2.957 108.130 90.757 1.00 53.30 O
ATOM 6 C5' U A 583 -2.792 107.485 89.487 1.00 56.20 C
ATOM 7 C4' U A 583 -4.042 106.735 89.116 1.00 59.40 C
ATOM 8 O4' U A 583 -4.257 105.663 90.071 1.00 60.75 O
ATOM 9 C3' U A 583 -5.333 107.533 89.181 1.00 60.89 C
ATOM 10 O3' U A 583 -5.546 108.350 88.046 1.00 62.52 O
ATOM 11 C2' U A 583 -6.366 106.432 89.316 1.00 61.33 C
ATOM 12 O2' U A 583 -6.609 105.768 88.093 1.00 60.48 O
ATOM 13 C1' U A 583 -5.649 105.497 90.292 1.00 62.03 C
ATOM 14 N1 U A 583 -5.944 105.865 91.687 1.00 63.55 N
ATOM 15 C2 U A 583 -6.913 105.142 92.349 1.00 64.15 C
ATOM 16 O2 U A 583 -7.502 104.207 91.844 1.00 67.13 O
ATOM 17 N3 U A 583 -7.168 105.552 93.631 1.00 64.18 N
ATOM 18 C4 U A 583 -6.564 106.581 94.308 1.00 64.69 C
ATOM 19 O4 U A 583 -6.877 106.798 95.478 1.00 66.00 O
ATOM 20 C5 U A 583 -5.565 107.279 93.562 1.00 65.24 C
ATOM 21 C6 U A 583 -5.292 106.906 92.311 1.00 64.38 C
ATOM 22 P C A 584 -6.359 109.728 88.208 1.00 64.55 P
ATOM 23 OP1 C A 584 -6.095 110.545 86.991 1.00 64.70 O
ATOM 24 OP2 C A 584 -6.108 110.315 89.556 1.00 62.30 O
ATOM 25 O5' C A 584 -7.877 109.256 88.167 1.00 66.82 O
TER
ATOM 1 O3' A B 581 0.527 107.298 97.811 1.00 63.21 O
ATOM 2 P C B 582 -0.530 108.238 97.052 1.00 60.27 P
ATOM 3 OP1 C B 582 0.052 109.590 96.910 1.00 60.03 O
ATOM 4 OP2 C B 582 -1.836 108.077 97.724 1.00 63.76 O
ATOM 5 O5' C B 582 -0.649 107.588 95.606 1.00 58.88 O
ATOM 6 C5' C B 582 0.492 107.485 94.755 1.00 55.41 C
ATOM 7 C4' C B 582 0.191 106.583 93.589 1.00 54.49 C
ATOM 8 O4' C B 582 -0.155 105.263 94.082 1.00 55.13 O
ATOM 9 C3' C B 582 -1.001 106.971 92.734 1.00 53.38 C
ATOM 10 O3' C B 582 -0.675 107.991 91.799 1.00 53.08 O
ATOM 11 C2' C B 582 -1.338 105.646 92.065 1.00 54.15 C
ATOM 12 O2' C B 582 -0.434 105.314 91.028 1.00 52.36 O
ATOM 13 C1' C B 582 -1.131 104.676 93.230 1.00 54.96 C
ATOM 14 N1 C B 582 -2.367 104.454 94.011 1.00 56.91 N
ATOM 15 C2 C B 582 -3.276 103.453 93.596 1.00 58.54 C
ATOM 16 O2 C B 582 -2.990 102.730 92.620 1.00 58.64 O
ATOM 17 N3 C B 582 -4.440 103.301 94.279 1.00 58.42 N
ATOM 18 C4 C B 582 -4.704 104.082 95.333 1.00 56.60 C
ATOM 19 N4 C B 582 -5.878 103.929 95.949 1.00 55.58 N
ATOM 20 C5 C B 582 -3.781 105.064 95.797 1.00 54.95 C
ATOM 21 C6 C B 582 -2.643 105.218 95.115 1.00 55.81 C
ATOM 22 P U B 583 -1.799 109.046 91.350 1.00 53.44 P
ATOM 23 OP1 U B 583 -1.248 109.846 90.230 1.00 52.75 O
ATOM 24 OP2 U B 583 -2.301 109.737 92.558 1.00 53.97 O
ATOM 25 O5' U B 583 -2.957 108.130 90.757 1.00 53.30 O
TER
Atoms:
C4: (-6.564,106.581,94.308)
N3: (-7.168,105.552,93.631)
OP1: (-1.248,109.846,90.230)
OP2: (-2.301,109.737,92.558)
C2: (-6.913,105.142,92.349)
C1': (-5.649,105.497,90.292)
C3': (-5.333,107.533,89.181)
O5': (-2.957,108.130,90.757)
O4': (-4.257,105.663,90.071)
C5': (-2.792,107.485,89.487)
P: (-1.799,109.046,91.350)
C4': (-4.042,106.735,89.116)
C2': (-6.366,106.432,89.316)
O2': (-6.609,105.768,88.093)
N1: (-5.944,105.865,91.687)
O4: (-6.877,106.798,95.478)
O2: (-7.502,104.207,91.844)
C6: (-5.292,106.906,92.311)
C5: (-5.565,107.279,93.562)
O3': (-5.546,108.350,88.046)
N3: (-7.168,105.552,93.631)
OP1: (-1.248,109.846,90.230)
OP2: (-2.301,109.737,92.558)
C2: (-6.913,105.142,92.349)
C1': (-5.649,105.497,90.292)
C3': (-5.333,107.533,89.181)
O5': (-2.957,108.130,90.757)
O4': (-4.257,105.663,90.071)
C5': (-2.792,107.485,89.487)
P: (-1.799,109.046,91.350)
C4': (-4.042,106.735,89.116)
C2': (-6.366,106.432,89.316)
O2': (-6.609,105.768,88.093)
N1: (-5.944,105.865,91.687)
O4: (-6.877,106.798,95.478)
O2: (-7.502,104.207,91.844)
C6: (-5.292,106.906,92.311)
C5: (-5.565,107.279,93.562)
O3': (-5.546,108.350,88.046)
C2: (-3.276,103.453,93.596)
OP1: (0.052,109.590,96.910)
OP2: (-1.836,108.077,97.724)
C4: (-4.704,104.082,95.333)
O5': (-0.649,107.588,95.606)
C3': (-1.001,106.971,92.734)
C1': (-1.131,104.676,93.230)
O4': (-0.155,105.263,94.082)
C5': (0.492,107.485,94.755)
P: (-0.530,108.238,97.052)
O2: (-2.990,102.730,92.620)
C4': (0.191,106.583,93.589)
C2': (-1.338,105.646,92.065)
O2': (-0.434,105.314,91.028)
N1: (-2.367,104.454,94.011)
N3: (-4.440,103.301,94.279)
N4: (-5.878,103.929,95.949)
C6: (-2.643,105.218,95.115)
C5: (-3.781,105.064,95.797)
O3': (-0.675,107.991,91.799)
OP1: (0.052,109.590,96.910)
OP2: (-1.836,108.077,97.724)
C4: (-4.704,104.082,95.333)
O5': (-0.649,107.588,95.606)
C3': (-1.001,106.971,92.734)
C1': (-1.131,104.676,93.230)
O4': (-0.155,105.263,94.082)
C5': (0.492,107.485,94.755)
P: (-0.530,108.238,97.052)
O2: (-2.990,102.730,92.620)
C4': (0.191,106.583,93.589)
C2': (-1.338,105.646,92.065)
O2': (-0.434,105.314,91.028)
N1: (-2.367,104.454,94.011)
N3: (-4.440,103.301,94.279)
N4: (-5.878,103.929,95.949)
C6: (-2.643,105.218,95.115)
C5: (-3.781,105.064,95.797)
O3': (-0.675,107.991,91.799)
Image (generated by PyMOL):