Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1K9M:A2023:A2022
Extra
PDB:
ATOM 1 O3' U A2022 35.366 121.621 104.513 1.00 33.07 O
ATOM 2 P C A2023 34.493 120.696 105.474 1.00 33.31 P
ATOM 3 OP1 C A2023 33.163 120.633 104.850 1.00 32.41 O
ATOM 4 OP2 C A2023 34.616 121.159 106.875 1.00 34.11 O
ATOM 5 O5' C A2023 35.168 119.261 105.347 1.00 32.17 O
ATOM 6 C5' C A2023 34.675 118.294 104.413 1.00 30.75 C
ATOM 7 C4' C A2023 34.970 116.904 104.901 1.00 30.17 C
ATOM 8 O4' C A2023 36.400 116.684 104.874 1.00 29.60 O
ATOM 9 C3' C A2023 34.525 116.650 106.325 1.00 28.77 C
ATOM 10 O3' C A2023 33.179 116.153 106.307 1.00 28.83 O
ATOM 11 C2' C A2023 35.546 115.622 106.812 1.00 28.04 C
ATOM 12 O2' C A2023 35.219 114.322 106.398 1.00 29.13 O
ATOM 13 C1' C A2023 36.810 116.017 106.044 1.00 28.85 C
ATOM 14 N1 C A2023 37.767 116.896 106.747 1.00 30.25 N
ATOM 15 C2 C A2023 38.611 116.367 107.727 1.00 30.83 C
ATOM 16 O2 C A2023 38.523 115.163 108.018 1.00 33.58 O
ATOM 17 N3 C A2023 39.507 117.186 108.331 1.00 31.16 N
ATOM 18 C4 C A2023 39.574 118.476 107.992 1.00 31.37 C
ATOM 19 N4 C A2023 40.473 119.244 108.606 1.00 31.64 N
ATOM 20 C5 C A2023 38.725 119.036 107.013 1.00 32.19 C
ATOM 21 C6 C A2023 37.841 118.223 106.424 1.00 31.91 C
ATOM 22 P U A2024 32.108 116.646 107.405 1.00 28.21 P
ATOM 23 OP1 U A2024 30.814 115.978 107.113 1.00 27.11 O
ATOM 24 OP2 U A2024 32.172 118.111 107.515 1.00 29.99 O
ATOM 25 O5' U A2024 32.655 116.043 108.764 1.00 26.88 O
TER
ATOM 1 O3' G B2021 40.584 124.239 107.590 1.00 32.79 O
ATOM 2 P U B2022 40.344 122.766 107.000 1.00 33.33 P
ATOM 3 OP1 U B2022 39.907 121.892 108.086 1.00 32.45 O
ATOM 4 OP2 U B2022 41.544 122.399 106.201 1.00 32.56 O
ATOM 5 O5' U B2022 39.134 122.928 105.980 1.00 33.79 O
ATOM 6 C5' U B2022 37.874 123.469 106.400 1.00 34.47 C
ATOM 7 C4' U B2022 36.842 123.279 105.323 1.00 34.59 C
ATOM 8 O4' U B2022 37.172 124.101 104.185 1.00 33.86 O
ATOM 9 C3' U B2022 36.719 121.852 104.810 1.00 35.08 C
ATOM 10 O3' U B2022 35.366 121.621 104.513 1.00 33.07 O
ATOM 11 C2' U B2022 37.508 121.871 103.509 1.00 35.73 C
ATOM 12 O2' U B2022 37.068 120.932 102.544 1.00 37.98 O
ATOM 13 C1' U B2022 37.255 123.297 103.031 1.00 34.03 C
ATOM 14 N1 U B2022 38.351 123.793 102.193 1.00 34.63 N
ATOM 15 C2 U B2022 38.088 124.031 100.863 1.00 33.69 C
ATOM 16 O2 U B2022 36.982 123.883 100.373 1.00 31.58 O
ATOM 17 N3 U B2022 39.172 124.441 100.130 1.00 32.54 N
ATOM 18 C4 U B2022 40.455 124.632 100.585 1.00 32.70 C
ATOM 19 O4 U B2022 41.340 124.912 99.783 1.00 32.65 O
ATOM 20 C5 U B2022 40.638 124.389 101.980 1.00 33.37 C
ATOM 21 C6 U B2022 39.605 123.990 102.716 1.00 34.49 C
ATOM 22 P C B2023 34.493 120.696 105.474 1.00 33.31 P
ATOM 23 OP1 C B2023 33.163 120.633 104.850 1.00 32.41 O
ATOM 24 OP2 C B2023 34.616 121.159 106.875 1.00 34.11 O
ATOM 25 O5' C B2023 35.168 119.261 105.347 1.00 32.17 O
TER
ATOM 2 P C A2023 34.493 120.696 105.474 1.00 33.31 P
ATOM 3 OP1 C A2023 33.163 120.633 104.850 1.00 32.41 O
ATOM 4 OP2 C A2023 34.616 121.159 106.875 1.00 34.11 O
ATOM 5 O5' C A2023 35.168 119.261 105.347 1.00 32.17 O
ATOM 6 C5' C A2023 34.675 118.294 104.413 1.00 30.75 C
ATOM 7 C4' C A2023 34.970 116.904 104.901 1.00 30.17 C
ATOM 8 O4' C A2023 36.400 116.684 104.874 1.00 29.60 O
ATOM 9 C3' C A2023 34.525 116.650 106.325 1.00 28.77 C
ATOM 10 O3' C A2023 33.179 116.153 106.307 1.00 28.83 O
ATOM 11 C2' C A2023 35.546 115.622 106.812 1.00 28.04 C
ATOM 12 O2' C A2023 35.219 114.322 106.398 1.00 29.13 O
ATOM 13 C1' C A2023 36.810 116.017 106.044 1.00 28.85 C
ATOM 14 N1 C A2023 37.767 116.896 106.747 1.00 30.25 N
ATOM 15 C2 C A2023 38.611 116.367 107.727 1.00 30.83 C
ATOM 16 O2 C A2023 38.523 115.163 108.018 1.00 33.58 O
ATOM 17 N3 C A2023 39.507 117.186 108.331 1.00 31.16 N
ATOM 18 C4 C A2023 39.574 118.476 107.992 1.00 31.37 C
ATOM 19 N4 C A2023 40.473 119.244 108.606 1.00 31.64 N
ATOM 20 C5 C A2023 38.725 119.036 107.013 1.00 32.19 C
ATOM 21 C6 C A2023 37.841 118.223 106.424 1.00 31.91 C
ATOM 22 P U A2024 32.108 116.646 107.405 1.00 28.21 P
ATOM 23 OP1 U A2024 30.814 115.978 107.113 1.00 27.11 O
ATOM 24 OP2 U A2024 32.172 118.111 107.515 1.00 29.99 O
ATOM 25 O5' U A2024 32.655 116.043 108.764 1.00 26.88 O
TER
ATOM 1 O3' G B2021 40.584 124.239 107.590 1.00 32.79 O
ATOM 2 P U B2022 40.344 122.766 107.000 1.00 33.33 P
ATOM 3 OP1 U B2022 39.907 121.892 108.086 1.00 32.45 O
ATOM 4 OP2 U B2022 41.544 122.399 106.201 1.00 32.56 O
ATOM 5 O5' U B2022 39.134 122.928 105.980 1.00 33.79 O
ATOM 6 C5' U B2022 37.874 123.469 106.400 1.00 34.47 C
ATOM 7 C4' U B2022 36.842 123.279 105.323 1.00 34.59 C
ATOM 8 O4' U B2022 37.172 124.101 104.185 1.00 33.86 O
ATOM 9 C3' U B2022 36.719 121.852 104.810 1.00 35.08 C
ATOM 10 O3' U B2022 35.366 121.621 104.513 1.00 33.07 O
ATOM 11 C2' U B2022 37.508 121.871 103.509 1.00 35.73 C
ATOM 12 O2' U B2022 37.068 120.932 102.544 1.00 37.98 O
ATOM 13 C1' U B2022 37.255 123.297 103.031 1.00 34.03 C
ATOM 14 N1 U B2022 38.351 123.793 102.193 1.00 34.63 N
ATOM 15 C2 U B2022 38.088 124.031 100.863 1.00 33.69 C
ATOM 16 O2 U B2022 36.982 123.883 100.373 1.00 31.58 O
ATOM 17 N3 U B2022 39.172 124.441 100.130 1.00 32.54 N
ATOM 18 C4 U B2022 40.455 124.632 100.585 1.00 32.70 C
ATOM 19 O4 U B2022 41.340 124.912 99.783 1.00 32.65 O
ATOM 20 C5 U B2022 40.638 124.389 101.980 1.00 33.37 C
ATOM 21 C6 U B2022 39.605 123.990 102.716 1.00 34.49 C
ATOM 22 P C B2023 34.493 120.696 105.474 1.00 33.31 P
ATOM 23 OP1 C B2023 33.163 120.633 104.850 1.00 32.41 O
ATOM 24 OP2 C B2023 34.616 121.159 106.875 1.00 34.11 O
ATOM 25 O5' C B2023 35.168 119.261 105.347 1.00 32.17 O
TER
Atoms:
C2: (38.611,116.367,107.727)
OP1: (33.163,120.633,104.850)
OP2: (34.616,121.159,106.875)
C4: (39.574,118.476,107.992)
O5': (35.168,119.261,105.347)
C3': (34.525,116.650,106.325)
C1': (36.810,116.017,106.044)
O4': (36.400,116.684,104.874)
C5': (34.675,118.294,104.413)
P: (34.493,120.696,105.474)
O2: (38.523,115.163,108.018)
C4': (34.970,116.904,104.901)
C2': (35.546,115.622,106.812)
O2': (35.219,114.322,106.398)
N1: (37.767,116.896,106.747)
N3: (39.507,117.186,108.331)
N4: (40.473,119.244,108.606)
C6: (37.841,118.223,106.424)
C5: (38.725,119.036,107.013)
O3': (33.179,116.153,106.307)
OP1: (33.163,120.633,104.850)
OP2: (34.616,121.159,106.875)
C4: (39.574,118.476,107.992)
O5': (35.168,119.261,105.347)
C3': (34.525,116.650,106.325)
C1': (36.810,116.017,106.044)
O4': (36.400,116.684,104.874)
C5': (34.675,118.294,104.413)
P: (34.493,120.696,105.474)
O2: (38.523,115.163,108.018)
C4': (34.970,116.904,104.901)
C2': (35.546,115.622,106.812)
O2': (35.219,114.322,106.398)
N1: (37.767,116.896,106.747)
N3: (39.507,117.186,108.331)
N4: (40.473,119.244,108.606)
C6: (37.841,118.223,106.424)
C5: (38.725,119.036,107.013)
O3': (33.179,116.153,106.307)
C4: (40.455,124.632,100.585)
N3: (39.172,124.441,100.130)
OP1: (39.907,121.892,108.086)
OP2: (41.544,122.399,106.201)
C2: (38.088,124.031,100.863)
C1': (37.255,123.297,103.031)
C3': (36.719,121.852,104.810)
O5': (39.134,122.928,105.980)
O4': (37.172,124.101,104.185)
C5': (37.874,123.469,106.400)
P: (40.344,122.766,107.000)
C4': (36.842,123.279,105.323)
C2': (37.508,121.871,103.509)
O2': (37.068,120.932,102.544)
N1: (38.351,123.793,102.193)
O4: (41.340,124.912,99.783)
O2: (36.982,123.883,100.373)
C6: (39.605,123.990,102.716)
C5: (40.638,124.389,101.980)
O3': (35.366,121.621,104.513)
N3: (39.172,124.441,100.130)
OP1: (39.907,121.892,108.086)
OP2: (41.544,122.399,106.201)
C2: (38.088,124.031,100.863)
C1': (37.255,123.297,103.031)
C3': (36.719,121.852,104.810)
O5': (39.134,122.928,105.980)
O4': (37.172,124.101,104.185)
C5': (37.874,123.469,106.400)
P: (40.344,122.766,107.000)
C4': (36.842,123.279,105.323)
C2': (37.508,121.871,103.509)
O2': (37.068,120.932,102.544)
N1: (38.351,123.793,102.193)
O4: (41.340,124.912,99.783)
O2: (36.982,123.883,100.373)
C6: (39.605,123.990,102.716)
C5: (40.638,124.389,101.980)
O3': (35.366,121.621,104.513)
Image (generated by PyMOL):