Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A1948:A1923
Extra
PDB:
ATOM 1 O3' G A1947 113.568 123.954 118.340 1.00 59.24 O
ATOM 2 P C A1948 113.713 122.741 117.278 1.00 60.63 P
ATOM 3 OP1 C A1948 115.127 122.319 117.199 1.00 60.08 O
ATOM 4 OP2 C A1948 113.026 123.179 116.037 1.00 60.89 O
ATOM 5 O5' C A1948 112.887 121.533 117.941 1.00 60.08 O
ATOM 6 C5' C A1948 113.157 121.105 119.311 1.00 60.10 C
ATOM 7 C4' C A1948 112.185 120.038 119.784 1.00 60.40 C
ATOM 8 O4' C A1948 110.878 120.572 120.092 1.00 61.19 O
ATOM 9 C3' C A1948 111.934 118.849 118.891 1.00 60.77 C
ATOM 10 O3' C A1948 112.993 117.913 118.982 1.00 60.46 O
ATOM 11 C2' C A1948 110.618 118.291 119.433 1.00 61.75 C
ATOM 12 O2' C A1948 110.729 117.349 120.484 1.00 62.55 O
ATOM 13 C1' C A1948 109.901 119.558 119.917 1.00 61.86 C
ATOM 14 N1 C A1948 108.896 120.043 118.952 1.00 62.07 N
ATOM 15 C2 C A1948 107.559 119.571 119.022 1.00 61.85 C
ATOM 16 O2 C A1948 107.208 118.859 119.971 1.00 61.81 O
ATOM 17 N3 C A1948 106.687 119.928 118.049 1.00 62.60 N
ATOM 18 C4 C A1948 107.085 120.730 117.057 1.00 62.57 C
ATOM 19 N4 C A1948 106.223 120.990 116.066 1.00 61.33 N
ATOM 20 C5 C A1948 108.396 121.285 117.018 1.00 62.56 C
ATOM 21 C6 C A1948 109.260 120.917 117.969 1.00 61.88 C
ATOM 22 P U A1949 113.461 117.146 117.662 1.00 61.95 P
ATOM 23 OP1 U A1949 114.269 115.966 118.060 1.00 62.02 O
ATOM 24 OP2 U A1949 114.035 118.158 116.737 1.00 59.16 O
ATOM 25 O5' U A1949 112.096 116.580 117.048 1.00 65.34 O
TER
ATOM 1 O3' G B1922 105.948 122.124 110.765 1.00 52.97 O
ATOM 2 P U B1923 105.406 122.009 112.282 1.00 51.53 P
ATOM 3 OP1 U B1923 104.523 123.157 112.565 1.00 51.75 O
ATOM 4 OP2 U B1923 106.545 121.719 113.193 1.00 51.66 O
ATOM 5 O5' U B1923 104.476 120.724 112.248 1.00 52.69 O
ATOM 6 C5' U B1923 103.621 120.475 111.128 1.00 52.25 C
ATOM 7 C4' U B1923 102.208 120.248 111.588 1.00 52.51 C
ATOM 8 O4' U B1923 102.121 118.943 112.225 1.00 53.81 O
ATOM 9 C3' U B1923 101.640 121.272 112.570 1.00 51.66 C
ATOM 10 O3' U B1923 100.291 121.573 112.204 1.00 52.77 O
ATOM 11 C2' U B1923 101.695 120.513 113.901 1.00 52.05 C
ATOM 12 O2' U B1923 100.698 120.844 114.832 1.00 52.33 O
ATOM 13 C1' U B1923 101.462 119.071 113.465 1.00 53.44 C
ATOM 14 N1 U B1923 101.961 118.055 114.413 1.00 55.78 N
ATOM 15 C2 U B1923 101.015 117.284 115.101 1.00 56.56 C
ATOM 16 O2 U B1923 99.818 117.431 114.976 1.00 56.59 O
ATOM 17 N3 U B1923 101.531 116.333 115.945 1.00 57.86 N
ATOM 18 C4 U B1923 102.859 116.068 116.178 1.00 58.69 C
ATOM 19 O4 U B1923 103.162 115.087 116.863 1.00 60.78 O
ATOM 20 C5 U B1923 103.776 116.918 115.462 1.00 57.72 C
ATOM 21 C6 U B1923 103.309 117.853 114.625 1.00 56.47 C
ATOM 22 P A B1924 99.897 123.031 111.614 1.00 52.19 P
ATOM 23 OP1 A B1924 100.195 124.077 112.638 1.00 52.69 O
ATOM 24 OP2 A B1924 98.506 122.846 111.158 1.00 52.89 O
ATOM 25 O5' A B1924 100.807 123.219 110.318 1.00 49.69 O
TER
ATOM 2 P C A1948 113.713 122.741 117.278 1.00 60.63 P
ATOM 3 OP1 C A1948 115.127 122.319 117.199 1.00 60.08 O
ATOM 4 OP2 C A1948 113.026 123.179 116.037 1.00 60.89 O
ATOM 5 O5' C A1948 112.887 121.533 117.941 1.00 60.08 O
ATOM 6 C5' C A1948 113.157 121.105 119.311 1.00 60.10 C
ATOM 7 C4' C A1948 112.185 120.038 119.784 1.00 60.40 C
ATOM 8 O4' C A1948 110.878 120.572 120.092 1.00 61.19 O
ATOM 9 C3' C A1948 111.934 118.849 118.891 1.00 60.77 C
ATOM 10 O3' C A1948 112.993 117.913 118.982 1.00 60.46 O
ATOM 11 C2' C A1948 110.618 118.291 119.433 1.00 61.75 C
ATOM 12 O2' C A1948 110.729 117.349 120.484 1.00 62.55 O
ATOM 13 C1' C A1948 109.901 119.558 119.917 1.00 61.86 C
ATOM 14 N1 C A1948 108.896 120.043 118.952 1.00 62.07 N
ATOM 15 C2 C A1948 107.559 119.571 119.022 1.00 61.85 C
ATOM 16 O2 C A1948 107.208 118.859 119.971 1.00 61.81 O
ATOM 17 N3 C A1948 106.687 119.928 118.049 1.00 62.60 N
ATOM 18 C4 C A1948 107.085 120.730 117.057 1.00 62.57 C
ATOM 19 N4 C A1948 106.223 120.990 116.066 1.00 61.33 N
ATOM 20 C5 C A1948 108.396 121.285 117.018 1.00 62.56 C
ATOM 21 C6 C A1948 109.260 120.917 117.969 1.00 61.88 C
ATOM 22 P U A1949 113.461 117.146 117.662 1.00 61.95 P
ATOM 23 OP1 U A1949 114.269 115.966 118.060 1.00 62.02 O
ATOM 24 OP2 U A1949 114.035 118.158 116.737 1.00 59.16 O
ATOM 25 O5' U A1949 112.096 116.580 117.048 1.00 65.34 O
TER
ATOM 1 O3' G B1922 105.948 122.124 110.765 1.00 52.97 O
ATOM 2 P U B1923 105.406 122.009 112.282 1.00 51.53 P
ATOM 3 OP1 U B1923 104.523 123.157 112.565 1.00 51.75 O
ATOM 4 OP2 U B1923 106.545 121.719 113.193 1.00 51.66 O
ATOM 5 O5' U B1923 104.476 120.724 112.248 1.00 52.69 O
ATOM 6 C5' U B1923 103.621 120.475 111.128 1.00 52.25 C
ATOM 7 C4' U B1923 102.208 120.248 111.588 1.00 52.51 C
ATOM 8 O4' U B1923 102.121 118.943 112.225 1.00 53.81 O
ATOM 9 C3' U B1923 101.640 121.272 112.570 1.00 51.66 C
ATOM 10 O3' U B1923 100.291 121.573 112.204 1.00 52.77 O
ATOM 11 C2' U B1923 101.695 120.513 113.901 1.00 52.05 C
ATOM 12 O2' U B1923 100.698 120.844 114.832 1.00 52.33 O
ATOM 13 C1' U B1923 101.462 119.071 113.465 1.00 53.44 C
ATOM 14 N1 U B1923 101.961 118.055 114.413 1.00 55.78 N
ATOM 15 C2 U B1923 101.015 117.284 115.101 1.00 56.56 C
ATOM 16 O2 U B1923 99.818 117.431 114.976 1.00 56.59 O
ATOM 17 N3 U B1923 101.531 116.333 115.945 1.00 57.86 N
ATOM 18 C4 U B1923 102.859 116.068 116.178 1.00 58.69 C
ATOM 19 O4 U B1923 103.162 115.087 116.863 1.00 60.78 O
ATOM 20 C5 U B1923 103.776 116.918 115.462 1.00 57.72 C
ATOM 21 C6 U B1923 103.309 117.853 114.625 1.00 56.47 C
ATOM 22 P A B1924 99.897 123.031 111.614 1.00 52.19 P
ATOM 23 OP1 A B1924 100.195 124.077 112.638 1.00 52.69 O
ATOM 24 OP2 A B1924 98.506 122.846 111.158 1.00 52.89 O
ATOM 25 O5' A B1924 100.807 123.219 110.318 1.00 49.69 O
TER
Atoms:
C2: (107.559,119.571,119.022)
OP1: (115.127,122.319,117.199)
OP2: (113.026,123.179,116.037)
C4: (107.085,120.730,117.057)
O5': (112.887,121.533,117.941)
C3': (111.934,118.849,118.891)
C1': (109.901,119.558,119.917)
O4': (110.878,120.572,120.092)
C5': (113.157,121.105,119.311)
P: (113.713,122.741,117.278)
O2: (107.208,118.859,119.971)
C4': (112.185,120.038,119.784)
C2': (110.618,118.291,119.433)
O2': (110.729,117.349,120.484)
N1: (108.896,120.043,118.952)
N3: (106.687,119.928,118.049)
N4: (106.223,120.990,116.066)
C6: (109.260,120.917,117.969)
C5: (108.396,121.285,117.018)
O3': (112.993,117.913,118.982)
OP1: (115.127,122.319,117.199)
OP2: (113.026,123.179,116.037)
C4: (107.085,120.730,117.057)
O5': (112.887,121.533,117.941)
C3': (111.934,118.849,118.891)
C1': (109.901,119.558,119.917)
O4': (110.878,120.572,120.092)
C5': (113.157,121.105,119.311)
P: (113.713,122.741,117.278)
O2: (107.208,118.859,119.971)
C4': (112.185,120.038,119.784)
C2': (110.618,118.291,119.433)
O2': (110.729,117.349,120.484)
N1: (108.896,120.043,118.952)
N3: (106.687,119.928,118.049)
N4: (106.223,120.990,116.066)
C6: (109.260,120.917,117.969)
C5: (108.396,121.285,117.018)
O3': (112.993,117.913,118.982)
C4: (102.859,116.068,116.178)
N3: (101.531,116.333,115.945)
OP1: (104.523,123.157,112.565)
OP2: (106.545,121.719,113.193)
C2: (101.015,117.284,115.101)
C1': (101.462,119.071,113.465)
C3': (101.640,121.272,112.570)
O5': (104.476,120.724,112.248)
O4': (102.121,118.943,112.225)
C5': (103.621,120.475,111.128)
P: (105.406,122.009,112.282)
C4': (102.208,120.248,111.588)
C2': (101.695,120.513,113.901)
O2': (100.698,120.844,114.832)
N1: (101.961,118.055,114.413)
O4: (103.162,115.087,116.863)
O2: (99.818,117.431,114.976)
C6: (103.309,117.853,114.625)
C5: (103.776,116.918,115.462)
O3': (100.291,121.573,112.204)
N3: (101.531,116.333,115.945)
OP1: (104.523,123.157,112.565)
OP2: (106.545,121.719,113.193)
C2: (101.015,117.284,115.101)
C1': (101.462,119.071,113.465)
C3': (101.640,121.272,112.570)
O5': (104.476,120.724,112.248)
O4': (102.121,118.943,112.225)
C5': (103.621,120.475,111.128)
P: (105.406,122.009,112.282)
C4': (102.208,120.248,111.588)
C2': (101.695,120.513,113.901)
O2': (100.698,120.844,114.832)
N1: (101.961,118.055,114.413)
O4: (103.162,115.087,116.863)
O2: (99.818,117.431,114.976)
C6: (103.309,117.853,114.625)
C5: (103.776,116.918,115.462)
O3': (100.291,121.573,112.204)
Image (generated by PyMOL):