Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A2023:A2022
Extra
PDB:
ATOM 1 O3' U A2022 35.490 121.835 104.486 1.00 34.37 O
ATOM 2 P C A2023 34.610 120.920 105.442 1.00 34.23 P
ATOM 3 OP1 C A2023 33.283 120.819 104.818 1.00 33.61 O
ATOM 4 OP2 C A2023 34.734 121.450 106.813 1.00 35.24 O
ATOM 5 O5' C A2023 35.284 119.486 105.336 1.00 32.96 O
ATOM 6 C5' C A2023 34.781 118.510 104.418 1.00 33.75 C
ATOM 7 C4' C A2023 35.064 117.125 104.928 1.00 34.70 C
ATOM 8 O4' C A2023 36.486 116.892 104.895 1.00 34.29 O
ATOM 9 C3' C A2023 34.627 116.913 106.359 1.00 34.21 C
ATOM 10 O3' C A2023 33.283 116.428 106.360 1.00 35.10 O
ATOM 11 C2' C A2023 35.635 115.891 106.874 1.00 34.70 C
ATOM 12 O2' C A2023 35.259 114.572 106.557 1.00 33.61 O
ATOM 13 C1' C A2023 36.892 116.241 106.072 1.00 34.80 C
ATOM 14 N1 C A2023 37.864 117.120 106.757 1.00 36.85 N
ATOM 15 C2 C A2023 38.707 116.578 107.726 1.00 37.00 C
ATOM 16 O2 C A2023 38.601 115.373 108.010 1.00 40.25 O
ATOM 17 N3 C A2023 39.624 117.381 108.320 1.00 36.42 N
ATOM 18 C4 C A2023 39.717 118.669 107.974 1.00 36.26 C
ATOM 19 N4 C A2023 40.643 119.413 108.566 1.00 36.11 N
ATOM 20 C5 C A2023 38.866 119.248 107.005 1.00 36.84 C
ATOM 21 C6 C A2023 37.957 118.449 106.431 1.00 37.50 C
ATOM 22 P U A2024 32.245 116.934 107.473 1.00 37.20 P
ATOM 23 OP1 U A2024 30.934 116.314 107.162 1.00 36.30 O
ATOM 24 OP2 U A2024 32.353 118.411 107.589 1.00 40.48 O
ATOM 25 O5' U A2024 32.799 116.298 108.819 1.00 34.64 O
TER
ATOM 1 O3' G B2021 40.595 124.595 107.644 1.00 34.76 O
ATOM 2 P U B2022 40.416 123.126 107.059 1.00 33.99 P
ATOM 3 OP1 U B2022 40.064 122.310 108.221 1.00 32.75 O
ATOM 4 OP2 U B2022 41.609 122.777 106.242 1.00 33.64 O
ATOM 5 O5' U B2022 39.199 123.234 106.038 1.00 33.63 O
ATOM 6 C5' U B2022 37.915 123.728 106.430 1.00 33.55 C
ATOM 7 C4' U B2022 36.922 123.516 105.318 1.00 34.07 C
ATOM 8 O4' U B2022 37.261 124.347 104.184 1.00 34.74 O
ATOM 9 C3' U B2022 36.830 122.088 104.803 1.00 35.03 C
ATOM 10 O3' U B2022 35.490 121.835 104.486 1.00 34.37 O
ATOM 11 C2' U B2022 37.603 122.124 103.492 1.00 36.23 C
ATOM 12 O2' U B2022 37.108 121.204 102.531 1.00 37.15 O
ATOM 13 C1' U B2022 37.342 123.550 103.025 1.00 35.37 C
ATOM 14 N1 U B2022 38.430 124.044 102.178 1.00 36.78 N
ATOM 15 C2 U B2022 38.142 124.286 100.853 1.00 35.40 C
ATOM 16 O2 U B2022 37.025 124.146 100.383 1.00 33.41 O
ATOM 17 N3 U B2022 39.209 124.686 100.101 1.00 34.46 N
ATOM 18 C4 U B2022 40.505 124.852 100.531 1.00 36.77 C
ATOM 19 O4 U B2022 41.393 124.982 99.692 1.00 38.91 O
ATOM 20 C5 U B2022 40.708 124.617 101.927 1.00 36.23 C
ATOM 21 C6 U B2022 39.690 124.232 102.680 1.00 36.58 C
ATOM 22 P C B2023 34.610 120.920 105.442 1.00 34.23 P
ATOM 23 OP1 C B2023 33.283 120.819 104.818 1.00 33.61 O
ATOM 24 OP2 C B2023 34.734 121.450 106.813 1.00 35.24 O
ATOM 25 O5' C B2023 35.284 119.486 105.336 1.00 32.96 O
TER
ATOM 2 P C A2023 34.610 120.920 105.442 1.00 34.23 P
ATOM 3 OP1 C A2023 33.283 120.819 104.818 1.00 33.61 O
ATOM 4 OP2 C A2023 34.734 121.450 106.813 1.00 35.24 O
ATOM 5 O5' C A2023 35.284 119.486 105.336 1.00 32.96 O
ATOM 6 C5' C A2023 34.781 118.510 104.418 1.00 33.75 C
ATOM 7 C4' C A2023 35.064 117.125 104.928 1.00 34.70 C
ATOM 8 O4' C A2023 36.486 116.892 104.895 1.00 34.29 O
ATOM 9 C3' C A2023 34.627 116.913 106.359 1.00 34.21 C
ATOM 10 O3' C A2023 33.283 116.428 106.360 1.00 35.10 O
ATOM 11 C2' C A2023 35.635 115.891 106.874 1.00 34.70 C
ATOM 12 O2' C A2023 35.259 114.572 106.557 1.00 33.61 O
ATOM 13 C1' C A2023 36.892 116.241 106.072 1.00 34.80 C
ATOM 14 N1 C A2023 37.864 117.120 106.757 1.00 36.85 N
ATOM 15 C2 C A2023 38.707 116.578 107.726 1.00 37.00 C
ATOM 16 O2 C A2023 38.601 115.373 108.010 1.00 40.25 O
ATOM 17 N3 C A2023 39.624 117.381 108.320 1.00 36.42 N
ATOM 18 C4 C A2023 39.717 118.669 107.974 1.00 36.26 C
ATOM 19 N4 C A2023 40.643 119.413 108.566 1.00 36.11 N
ATOM 20 C5 C A2023 38.866 119.248 107.005 1.00 36.84 C
ATOM 21 C6 C A2023 37.957 118.449 106.431 1.00 37.50 C
ATOM 22 P U A2024 32.245 116.934 107.473 1.00 37.20 P
ATOM 23 OP1 U A2024 30.934 116.314 107.162 1.00 36.30 O
ATOM 24 OP2 U A2024 32.353 118.411 107.589 1.00 40.48 O
ATOM 25 O5' U A2024 32.799 116.298 108.819 1.00 34.64 O
TER
ATOM 1 O3' G B2021 40.595 124.595 107.644 1.00 34.76 O
ATOM 2 P U B2022 40.416 123.126 107.059 1.00 33.99 P
ATOM 3 OP1 U B2022 40.064 122.310 108.221 1.00 32.75 O
ATOM 4 OP2 U B2022 41.609 122.777 106.242 1.00 33.64 O
ATOM 5 O5' U B2022 39.199 123.234 106.038 1.00 33.63 O
ATOM 6 C5' U B2022 37.915 123.728 106.430 1.00 33.55 C
ATOM 7 C4' U B2022 36.922 123.516 105.318 1.00 34.07 C
ATOM 8 O4' U B2022 37.261 124.347 104.184 1.00 34.74 O
ATOM 9 C3' U B2022 36.830 122.088 104.803 1.00 35.03 C
ATOM 10 O3' U B2022 35.490 121.835 104.486 1.00 34.37 O
ATOM 11 C2' U B2022 37.603 122.124 103.492 1.00 36.23 C
ATOM 12 O2' U B2022 37.108 121.204 102.531 1.00 37.15 O
ATOM 13 C1' U B2022 37.342 123.550 103.025 1.00 35.37 C
ATOM 14 N1 U B2022 38.430 124.044 102.178 1.00 36.78 N
ATOM 15 C2 U B2022 38.142 124.286 100.853 1.00 35.40 C
ATOM 16 O2 U B2022 37.025 124.146 100.383 1.00 33.41 O
ATOM 17 N3 U B2022 39.209 124.686 100.101 1.00 34.46 N
ATOM 18 C4 U B2022 40.505 124.852 100.531 1.00 36.77 C
ATOM 19 O4 U B2022 41.393 124.982 99.692 1.00 38.91 O
ATOM 20 C5 U B2022 40.708 124.617 101.927 1.00 36.23 C
ATOM 21 C6 U B2022 39.690 124.232 102.680 1.00 36.58 C
ATOM 22 P C B2023 34.610 120.920 105.442 1.00 34.23 P
ATOM 23 OP1 C B2023 33.283 120.819 104.818 1.00 33.61 O
ATOM 24 OP2 C B2023 34.734 121.450 106.813 1.00 35.24 O
ATOM 25 O5' C B2023 35.284 119.486 105.336 1.00 32.96 O
TER
Atoms:
C2: (38.707,116.578,107.726)
OP1: (33.283,120.819,104.818)
OP2: (34.734,121.450,106.813)
C4: (39.717,118.669,107.974)
O5': (35.284,119.486,105.336)
C3': (34.627,116.913,106.359)
C1': (36.892,116.241,106.072)
O4': (36.486,116.892,104.895)
C5': (34.781,118.510,104.418)
P: (34.610,120.920,105.442)
O2: (38.601,115.373,108.010)
C4': (35.064,117.125,104.928)
C2': (35.635,115.891,106.874)
O2': (35.259,114.572,106.557)
N1: (37.864,117.120,106.757)
N3: (39.624,117.381,108.320)
N4: (40.643,119.413,108.566)
C6: (37.957,118.449,106.431)
C5: (38.866,119.248,107.005)
O3': (33.283,116.428,106.360)
OP1: (33.283,120.819,104.818)
OP2: (34.734,121.450,106.813)
C4: (39.717,118.669,107.974)
O5': (35.284,119.486,105.336)
C3': (34.627,116.913,106.359)
C1': (36.892,116.241,106.072)
O4': (36.486,116.892,104.895)
C5': (34.781,118.510,104.418)
P: (34.610,120.920,105.442)
O2: (38.601,115.373,108.010)
C4': (35.064,117.125,104.928)
C2': (35.635,115.891,106.874)
O2': (35.259,114.572,106.557)
N1: (37.864,117.120,106.757)
N3: (39.624,117.381,108.320)
N4: (40.643,119.413,108.566)
C6: (37.957,118.449,106.431)
C5: (38.866,119.248,107.005)
O3': (33.283,116.428,106.360)
C4: (40.505,124.852,100.531)
N3: (39.209,124.686,100.101)
OP1: (40.064,122.310,108.221)
OP2: (41.609,122.777,106.242)
C2: (38.142,124.286,100.853)
C1': (37.342,123.550,103.025)
C3': (36.830,122.088,104.803)
O5': (39.199,123.234,106.038)
O4': (37.261,124.347,104.184)
C5': (37.915,123.728,106.430)
P: (40.416,123.126,107.059)
C4': (36.922,123.516,105.318)
C2': (37.603,122.124,103.492)
O2': (37.108,121.204,102.531)
N1: (38.430,124.044,102.178)
O4: (41.393,124.982,99.692)
O2: (37.025,124.146,100.383)
C6: (39.690,124.232,102.680)
C5: (40.708,124.617,101.927)
O3': (35.490,121.835,104.486)
N3: (39.209,124.686,100.101)
OP1: (40.064,122.310,108.221)
OP2: (41.609,122.777,106.242)
C2: (38.142,124.286,100.853)
C1': (37.342,123.550,103.025)
C3': (36.830,122.088,104.803)
O5': (39.199,123.234,106.038)
O4': (37.261,124.347,104.184)
C5': (37.915,123.728,106.430)
P: (40.416,123.126,107.059)
C4': (36.922,123.516,105.318)
C2': (37.603,122.124,103.492)
O2': (37.108,121.204,102.531)
N1: (38.430,124.044,102.178)
O4: (41.393,124.982,99.692)
O2: (37.025,124.146,100.383)
C6: (39.690,124.232,102.680)
C5: (40.708,124.617,101.927)
O3': (35.490,121.835,104.486)
Image (generated by PyMOL):