Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1NJI:A2023:A2022
Extra
PDB:
ATOM 1 O3' U A2022 35.180 121.640 103.999 1.00 27.72 O
ATOM 2 P C A2023 34.275 120.659 104.869 1.00 29.07 P
ATOM 3 OP1 C A2023 32.972 120.655 104.163 1.00 28.61 O
ATOM 4 OP2 C A2023 34.340 121.101 106.283 1.00 27.32 O
ATOM 5 O5' C A2023 34.981 119.232 104.750 1.00 27.31 O
ATOM 6 C5' C A2023 34.473 118.206 103.860 1.00 25.95 C
ATOM 7 C4' C A2023 34.862 116.829 104.359 1.00 25.38 C
ATOM 8 O4' C A2023 36.298 116.638 104.311 1.00 24.74 O
ATOM 9 C3' C A2023 34.464 116.573 105.796 1.00 24.83 C
ATOM 10 O3' C A2023 33.129 116.091 105.814 1.00 26.09 O
ATOM 11 C2' C A2023 35.490 115.552 106.275 1.00 24.76 C
ATOM 12 O2' C A2023 35.146 114.220 105.978 1.00 24.12 O
ATOM 13 C1' C A2023 36.729 115.958 105.473 1.00 24.54 C
ATOM 14 N1 C A2023 37.678 116.837 106.176 1.00 26.34 N
ATOM 15 C2 C A2023 38.524 116.301 107.164 1.00 28.26 C
ATOM 16 O2 C A2023 38.415 115.103 107.476 1.00 29.73 O
ATOM 17 N3 C A2023 39.434 117.113 107.756 1.00 29.60 N
ATOM 18 C4 C A2023 39.505 118.405 107.410 1.00 28.50 C
ATOM 19 N4 C A2023 40.426 119.168 108.002 1.00 27.94 N
ATOM 20 C5 C A2023 38.637 118.972 106.438 1.00 28.59 C
ATOM 21 C6 C A2023 37.751 118.163 105.855 1.00 26.67 C
ATOM 22 P U A2024 32.113 116.608 106.933 1.00 27.97 P
ATOM 23 OP1 U A2024 30.784 116.004 106.638 1.00 26.05 O
ATOM 24 OP2 U A2024 32.240 118.076 107.054 1.00 27.03 O
ATOM 25 O5' U A2024 32.684 115.962 108.270 1.00 26.04 O
TER
ATOM 1 O3' G B2021 40.344 124.275 107.132 1.00 25.24 O
ATOM 2 P U B2022 40.125 122.795 106.577 1.00 26.73 P
ATOM 3 OP1 U B2022 39.716 121.996 107.737 1.00 26.16 O
ATOM 4 OP2 U B2022 41.334 122.396 105.795 1.00 26.67 O
ATOM 5 O5' U B2022 38.905 122.927 105.562 1.00 26.61 O
ATOM 6 C5' U B2022 37.655 123.479 105.966 1.00 25.77 C
ATOM 7 C4' U B2022 36.627 123.273 104.886 1.00 27.60 C
ATOM 8 O4' U B2022 36.940 124.099 103.739 1.00 28.71 O
ATOM 9 C3' U B2022 36.513 121.852 104.359 1.00 27.47 C
ATOM 10 O3' U B2022 35.180 121.640 103.999 1.00 27.72 O
ATOM 11 C2' U B2022 37.344 121.889 103.081 1.00 29.43 C
ATOM 12 O2' U B2022 36.950 120.962 102.079 1.00 33.20 O
ATOM 13 C1' U B2022 37.044 123.293 102.581 1.00 28.06 C
ATOM 14 N1 U B2022 38.131 123.812 101.750 1.00 28.91 N
ATOM 15 C2 U B2022 37.873 124.064 100.418 1.00 27.83 C
ATOM 16 O2 U B2022 36.794 123.874 99.901 1.00 26.57 O
ATOM 17 N3 U B2022 38.943 124.536 99.708 1.00 29.47 N
ATOM 18 C4 U B2022 40.220 124.756 100.186 1.00 31.62 C
ATOM 19 O4 U B2022 41.112 125.038 99.399 1.00 32.96 O
ATOM 20 C5 U B2022 40.399 124.484 101.578 1.00 32.32 C
ATOM 21 C6 U B2022 39.375 124.033 102.292 1.00 29.82 C
ATOM 22 P C B2023 34.275 120.659 104.869 1.00 29.07 P
ATOM 23 OP1 C B2023 32.972 120.655 104.163 1.00 28.61 O
ATOM 24 OP2 C B2023 34.340 121.101 106.283 1.00 27.32 O
ATOM 25 O5' C B2023 34.981 119.232 104.750 1.00 27.31 O
TER
ATOM 2 P C A2023 34.275 120.659 104.869 1.00 29.07 P
ATOM 3 OP1 C A2023 32.972 120.655 104.163 1.00 28.61 O
ATOM 4 OP2 C A2023 34.340 121.101 106.283 1.00 27.32 O
ATOM 5 O5' C A2023 34.981 119.232 104.750 1.00 27.31 O
ATOM 6 C5' C A2023 34.473 118.206 103.860 1.00 25.95 C
ATOM 7 C4' C A2023 34.862 116.829 104.359 1.00 25.38 C
ATOM 8 O4' C A2023 36.298 116.638 104.311 1.00 24.74 O
ATOM 9 C3' C A2023 34.464 116.573 105.796 1.00 24.83 C
ATOM 10 O3' C A2023 33.129 116.091 105.814 1.00 26.09 O
ATOM 11 C2' C A2023 35.490 115.552 106.275 1.00 24.76 C
ATOM 12 O2' C A2023 35.146 114.220 105.978 1.00 24.12 O
ATOM 13 C1' C A2023 36.729 115.958 105.473 1.00 24.54 C
ATOM 14 N1 C A2023 37.678 116.837 106.176 1.00 26.34 N
ATOM 15 C2 C A2023 38.524 116.301 107.164 1.00 28.26 C
ATOM 16 O2 C A2023 38.415 115.103 107.476 1.00 29.73 O
ATOM 17 N3 C A2023 39.434 117.113 107.756 1.00 29.60 N
ATOM 18 C4 C A2023 39.505 118.405 107.410 1.00 28.50 C
ATOM 19 N4 C A2023 40.426 119.168 108.002 1.00 27.94 N
ATOM 20 C5 C A2023 38.637 118.972 106.438 1.00 28.59 C
ATOM 21 C6 C A2023 37.751 118.163 105.855 1.00 26.67 C
ATOM 22 P U A2024 32.113 116.608 106.933 1.00 27.97 P
ATOM 23 OP1 U A2024 30.784 116.004 106.638 1.00 26.05 O
ATOM 24 OP2 U A2024 32.240 118.076 107.054 1.00 27.03 O
ATOM 25 O5' U A2024 32.684 115.962 108.270 1.00 26.04 O
TER
ATOM 1 O3' G B2021 40.344 124.275 107.132 1.00 25.24 O
ATOM 2 P U B2022 40.125 122.795 106.577 1.00 26.73 P
ATOM 3 OP1 U B2022 39.716 121.996 107.737 1.00 26.16 O
ATOM 4 OP2 U B2022 41.334 122.396 105.795 1.00 26.67 O
ATOM 5 O5' U B2022 38.905 122.927 105.562 1.00 26.61 O
ATOM 6 C5' U B2022 37.655 123.479 105.966 1.00 25.77 C
ATOM 7 C4' U B2022 36.627 123.273 104.886 1.00 27.60 C
ATOM 8 O4' U B2022 36.940 124.099 103.739 1.00 28.71 O
ATOM 9 C3' U B2022 36.513 121.852 104.359 1.00 27.47 C
ATOM 10 O3' U B2022 35.180 121.640 103.999 1.00 27.72 O
ATOM 11 C2' U B2022 37.344 121.889 103.081 1.00 29.43 C
ATOM 12 O2' U B2022 36.950 120.962 102.079 1.00 33.20 O
ATOM 13 C1' U B2022 37.044 123.293 102.581 1.00 28.06 C
ATOM 14 N1 U B2022 38.131 123.812 101.750 1.00 28.91 N
ATOM 15 C2 U B2022 37.873 124.064 100.418 1.00 27.83 C
ATOM 16 O2 U B2022 36.794 123.874 99.901 1.00 26.57 O
ATOM 17 N3 U B2022 38.943 124.536 99.708 1.00 29.47 N
ATOM 18 C4 U B2022 40.220 124.756 100.186 1.00 31.62 C
ATOM 19 O4 U B2022 41.112 125.038 99.399 1.00 32.96 O
ATOM 20 C5 U B2022 40.399 124.484 101.578 1.00 32.32 C
ATOM 21 C6 U B2022 39.375 124.033 102.292 1.00 29.82 C
ATOM 22 P C B2023 34.275 120.659 104.869 1.00 29.07 P
ATOM 23 OP1 C B2023 32.972 120.655 104.163 1.00 28.61 O
ATOM 24 OP2 C B2023 34.340 121.101 106.283 1.00 27.32 O
ATOM 25 O5' C B2023 34.981 119.232 104.750 1.00 27.31 O
TER
Atoms:
C2: (38.524,116.301,107.164)
OP1: (32.972,120.655,104.163)
OP2: (34.340,121.101,106.283)
C4: (39.505,118.405,107.410)
O5': (34.981,119.232,104.750)
C3': (34.464,116.573,105.796)
C1': (36.729,115.958,105.473)
O4': (36.298,116.638,104.311)
C5': (34.473,118.206,103.860)
P: (34.275,120.659,104.869)
O2: (38.415,115.103,107.476)
C4': (34.862,116.829,104.359)
C2': (35.490,115.552,106.275)
O2': (35.146,114.220,105.978)
N1: (37.678,116.837,106.176)
N3: (39.434,117.113,107.756)
N4: (40.426,119.168,108.002)
C6: (37.751,118.163,105.855)
C5: (38.637,118.972,106.438)
O3': (33.129,116.091,105.814)
OP1: (32.972,120.655,104.163)
OP2: (34.340,121.101,106.283)
C4: (39.505,118.405,107.410)
O5': (34.981,119.232,104.750)
C3': (34.464,116.573,105.796)
C1': (36.729,115.958,105.473)
O4': (36.298,116.638,104.311)
C5': (34.473,118.206,103.860)
P: (34.275,120.659,104.869)
O2: (38.415,115.103,107.476)
C4': (34.862,116.829,104.359)
C2': (35.490,115.552,106.275)
O2': (35.146,114.220,105.978)
N1: (37.678,116.837,106.176)
N3: (39.434,117.113,107.756)
N4: (40.426,119.168,108.002)
C6: (37.751,118.163,105.855)
C5: (38.637,118.972,106.438)
O3': (33.129,116.091,105.814)
C4: (40.220,124.756,100.186)
N3: (38.943,124.536,99.708)
OP1: (39.716,121.996,107.737)
OP2: (41.334,122.396,105.795)
C2: (37.873,124.064,100.418)
C1': (37.044,123.293,102.581)
C3': (36.513,121.852,104.359)
O5': (38.905,122.927,105.562)
O4': (36.940,124.099,103.739)
C5': (37.655,123.479,105.966)
P: (40.125,122.795,106.577)
C4': (36.627,123.273,104.886)
C2': (37.344,121.889,103.081)
O2': (36.950,120.962,102.079)
N1: (38.131,123.812,101.750)
O4: (41.112,125.038,99.399)
O2: (36.794,123.874,99.901)
C6: (39.375,124.033,102.292)
C5: (40.399,124.484,101.578)
O3': (35.180,121.640,103.999)
N3: (38.943,124.536,99.708)
OP1: (39.716,121.996,107.737)
OP2: (41.334,122.396,105.795)
C2: (37.873,124.064,100.418)
C1': (37.044,123.293,102.581)
C3': (36.513,121.852,104.359)
O5': (38.905,122.927,105.562)
O4': (36.940,124.099,103.739)
C5': (37.655,123.479,105.966)
P: (40.125,122.795,106.577)
C4': (36.627,123.273,104.886)
C2': (37.344,121.889,103.081)
O2': (36.950,120.962,102.079)
N1: (38.131,123.812,101.750)
O4: (41.112,125.038,99.399)
O2: (36.794,123.874,99.901)
C6: (39.375,124.033,102.292)
C5: (40.399,124.484,101.578)
O3': (35.180,121.640,103.999)
Image (generated by PyMOL):