Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:02023:02022
Extra
PDB:
ATOM 1 O3' U A2022 35.276 121.655 104.062 1.00 39.11 O
ATOM 2 P C A2023 34.367 120.797 105.061 1.00 39.50 P
ATOM 3 OP1 C A2023 33.006 120.743 104.473 1.00 39.20 O
ATOM 4 OP2 C A2023 34.560 121.368 106.421 1.00 36.73 O
ATOM 5 O5' C A2023 35.008 119.341 105.022 1.00 35.65 O
ATOM 6 C5' C A2023 34.572 118.365 104.057 1.00 36.03 C
ATOM 7 C4' C A2023 34.933 116.974 104.523 1.00 34.55 C
ATOM 8 O4' C A2023 36.367 116.792 104.481 1.00 33.70 O
ATOM 9 C3' C A2023 34.527 116.690 105.954 1.00 35.43 C
ATOM 10 O3' C A2023 33.190 116.214 105.973 1.00 35.85 O
ATOM 11 C2' C A2023 35.551 115.655 106.406 1.00 35.20 C
ATOM 12 O2' C A2023 35.216 114.341 106.016 1.00 34.06 O
ATOM 13 C1' C A2023 36.799 116.102 105.635 1.00 34.63 C
ATOM 14 N1 C A2023 37.740 116.980 106.355 1.00 35.13 N
ATOM 15 C2 C A2023 38.487 116.466 107.424 1.00 35.83 C
ATOM 16 O2 C A2023 38.294 115.295 107.791 1.00 35.27 O
ATOM 17 N3 C A2023 39.395 117.264 108.035 1.00 35.95 N
ATOM 18 C4 C A2023 39.557 118.524 107.628 1.00 35.12 C
ATOM 19 N4 C A2023 40.467 119.270 108.242 1.00 36.20 N
ATOM 20 C5 C A2023 38.792 119.076 106.568 1.00 36.60 C
ATOM 21 C6 C A2023 37.903 118.281 105.967 1.00 35.48 C
ATOM 22 P U A2024 32.183 116.711 107.115 1.00 38.90 P
ATOM 23 OP1 U A2024 30.880 116.059 106.823 1.00 39.18 O
ATOM 24 OP2 U A2024 32.254 118.190 107.235 1.00 39.94 O
ATOM 25 O5' U A2024 32.784 116.076 108.444 1.00 37.39 O
TER
ATOM 1 O3' G B2021 40.375 124.434 107.318 1.00 35.33 O
ATOM 2 P U B2022 40.191 122.939 106.783 1.00 36.94 P
ATOM 3 OP1 U B2022 39.789 122.115 107.941 1.00 37.88 O
ATOM 4 OP2 U B2022 41.404 122.588 106.014 1.00 35.03 O
ATOM 5 O5' U B2022 38.987 123.016 105.743 1.00 35.91 O
ATOM 6 C5' U B2022 37.705 123.518 106.120 1.00 36.31 C
ATOM 7 C4' U B2022 36.727 123.344 104.984 1.00 38.41 C
ATOM 8 O4' U B2022 37.113 124.201 103.870 1.00 38.96 O
ATOM 9 C3' U B2022 36.619 121.929 104.413 1.00 40.11 C
ATOM 10 O3' U B2022 35.276 121.655 104.062 1.00 39.11 O
ATOM 11 C2' U B2022 37.476 122.000 103.152 1.00 41.02 C
ATOM 12 O2' U B2022 37.113 121.086 102.131 1.00 44.27 O
ATOM 13 C1' U B2022 37.215 123.427 102.691 1.00 38.44 C
ATOM 14 N1 U B2022 38.321 123.931 101.868 1.00 38.48 N
ATOM 15 C2 U B2022 38.063 124.194 100.531 1.00 37.06 C
ATOM 16 O2 U B2022 36.964 124.065 100.028 1.00 34.58 O
ATOM 17 N3 U B2022 39.147 124.611 99.806 1.00 36.77 N
ATOM 18 C4 U B2022 40.435 124.789 100.267 1.00 36.52 C
ATOM 19 O4 U B2022 41.322 125.083 99.469 1.00 38.13 O
ATOM 20 C5 U B2022 40.617 124.524 101.660 1.00 35.34 C
ATOM 21 C6 U B2022 39.583 124.116 102.396 1.00 37.57 C
ATOM 22 P C B2023 34.367 120.797 105.061 1.00 39.50 P
ATOM 23 OP1 C B2023 33.006 120.743 104.473 1.00 39.20 O
ATOM 24 OP2 C B2023 34.560 121.368 106.421 1.00 36.73 O
ATOM 25 O5' C B2023 35.008 119.341 105.022 1.00 35.65 O
TER
ATOM 2 P C A2023 34.367 120.797 105.061 1.00 39.50 P
ATOM 3 OP1 C A2023 33.006 120.743 104.473 1.00 39.20 O
ATOM 4 OP2 C A2023 34.560 121.368 106.421 1.00 36.73 O
ATOM 5 O5' C A2023 35.008 119.341 105.022 1.00 35.65 O
ATOM 6 C5' C A2023 34.572 118.365 104.057 1.00 36.03 C
ATOM 7 C4' C A2023 34.933 116.974 104.523 1.00 34.55 C
ATOM 8 O4' C A2023 36.367 116.792 104.481 1.00 33.70 O
ATOM 9 C3' C A2023 34.527 116.690 105.954 1.00 35.43 C
ATOM 10 O3' C A2023 33.190 116.214 105.973 1.00 35.85 O
ATOM 11 C2' C A2023 35.551 115.655 106.406 1.00 35.20 C
ATOM 12 O2' C A2023 35.216 114.341 106.016 1.00 34.06 O
ATOM 13 C1' C A2023 36.799 116.102 105.635 1.00 34.63 C
ATOM 14 N1 C A2023 37.740 116.980 106.355 1.00 35.13 N
ATOM 15 C2 C A2023 38.487 116.466 107.424 1.00 35.83 C
ATOM 16 O2 C A2023 38.294 115.295 107.791 1.00 35.27 O
ATOM 17 N3 C A2023 39.395 117.264 108.035 1.00 35.95 N
ATOM 18 C4 C A2023 39.557 118.524 107.628 1.00 35.12 C
ATOM 19 N4 C A2023 40.467 119.270 108.242 1.00 36.20 N
ATOM 20 C5 C A2023 38.792 119.076 106.568 1.00 36.60 C
ATOM 21 C6 C A2023 37.903 118.281 105.967 1.00 35.48 C
ATOM 22 P U A2024 32.183 116.711 107.115 1.00 38.90 P
ATOM 23 OP1 U A2024 30.880 116.059 106.823 1.00 39.18 O
ATOM 24 OP2 U A2024 32.254 118.190 107.235 1.00 39.94 O
ATOM 25 O5' U A2024 32.784 116.076 108.444 1.00 37.39 O
TER
ATOM 1 O3' G B2021 40.375 124.434 107.318 1.00 35.33 O
ATOM 2 P U B2022 40.191 122.939 106.783 1.00 36.94 P
ATOM 3 OP1 U B2022 39.789 122.115 107.941 1.00 37.88 O
ATOM 4 OP2 U B2022 41.404 122.588 106.014 1.00 35.03 O
ATOM 5 O5' U B2022 38.987 123.016 105.743 1.00 35.91 O
ATOM 6 C5' U B2022 37.705 123.518 106.120 1.00 36.31 C
ATOM 7 C4' U B2022 36.727 123.344 104.984 1.00 38.41 C
ATOM 8 O4' U B2022 37.113 124.201 103.870 1.00 38.96 O
ATOM 9 C3' U B2022 36.619 121.929 104.413 1.00 40.11 C
ATOM 10 O3' U B2022 35.276 121.655 104.062 1.00 39.11 O
ATOM 11 C2' U B2022 37.476 122.000 103.152 1.00 41.02 C
ATOM 12 O2' U B2022 37.113 121.086 102.131 1.00 44.27 O
ATOM 13 C1' U B2022 37.215 123.427 102.691 1.00 38.44 C
ATOM 14 N1 U B2022 38.321 123.931 101.868 1.00 38.48 N
ATOM 15 C2 U B2022 38.063 124.194 100.531 1.00 37.06 C
ATOM 16 O2 U B2022 36.964 124.065 100.028 1.00 34.58 O
ATOM 17 N3 U B2022 39.147 124.611 99.806 1.00 36.77 N
ATOM 18 C4 U B2022 40.435 124.789 100.267 1.00 36.52 C
ATOM 19 O4 U B2022 41.322 125.083 99.469 1.00 38.13 O
ATOM 20 C5 U B2022 40.617 124.524 101.660 1.00 35.34 C
ATOM 21 C6 U B2022 39.583 124.116 102.396 1.00 37.57 C
ATOM 22 P C B2023 34.367 120.797 105.061 1.00 39.50 P
ATOM 23 OP1 C B2023 33.006 120.743 104.473 1.00 39.20 O
ATOM 24 OP2 C B2023 34.560 121.368 106.421 1.00 36.73 O
ATOM 25 O5' C B2023 35.008 119.341 105.022 1.00 35.65 O
TER
Atoms:
C2: (38.487,116.466,107.424)
OP1: (33.006,120.743,104.473)
OP2: (34.560,121.368,106.421)
C4: (39.557,118.524,107.628)
O5': (35.008,119.341,105.022)
C3': (34.527,116.690,105.954)
C1': (36.799,116.102,105.635)
O4': (36.367,116.792,104.481)
C5': (34.572,118.365,104.057)
P: (34.367,120.797,105.061)
O2: (38.294,115.295,107.791)
C4': (34.933,116.974,104.523)
C2': (35.551,115.655,106.406)
O2': (35.216,114.341,106.016)
N1: (37.740,116.980,106.355)
N3: (39.395,117.264,108.035)
N4: (40.467,119.270,108.242)
C6: (37.903,118.281,105.967)
C5: (38.792,119.076,106.568)
O3': (33.190,116.214,105.973)
OP1: (33.006,120.743,104.473)
OP2: (34.560,121.368,106.421)
C4: (39.557,118.524,107.628)
O5': (35.008,119.341,105.022)
C3': (34.527,116.690,105.954)
C1': (36.799,116.102,105.635)
O4': (36.367,116.792,104.481)
C5': (34.572,118.365,104.057)
P: (34.367,120.797,105.061)
O2: (38.294,115.295,107.791)
C4': (34.933,116.974,104.523)
C2': (35.551,115.655,106.406)
O2': (35.216,114.341,106.016)
N1: (37.740,116.980,106.355)
N3: (39.395,117.264,108.035)
N4: (40.467,119.270,108.242)
C6: (37.903,118.281,105.967)
C5: (38.792,119.076,106.568)
O3': (33.190,116.214,105.973)
C4: (40.435,124.789,100.267)
N3: (39.147,124.611,99.806)
OP1: (39.789,122.115,107.941)
OP2: (41.404,122.588,106.014)
C2: (38.063,124.194,100.531)
C1': (37.215,123.427,102.691)
C3': (36.619,121.929,104.413)
O5': (38.987,123.016,105.743)
O4': (37.113,124.201,103.870)
C5': (37.705,123.518,106.120)
P: (40.191,122.939,106.783)
C4': (36.727,123.344,104.984)
C2': (37.476,122.000,103.152)
O2': (37.113,121.086,102.131)
N1: (38.321,123.931,101.868)
O4: (41.322,125.083,99.469)
O2: (36.964,124.065,100.028)
C6: (39.583,124.116,102.396)
C5: (40.617,124.524,101.660)
O3': (35.276,121.655,104.062)
N3: (39.147,124.611,99.806)
OP1: (39.789,122.115,107.941)
OP2: (41.404,122.588,106.014)
C2: (38.063,124.194,100.531)
C1': (37.215,123.427,102.691)
C3': (36.619,121.929,104.413)
O5': (38.987,123.016,105.743)
O4': (37.113,124.201,103.870)
C5': (37.705,123.518,106.120)
P: (40.191,122.939,106.783)
C4': (36.727,123.344,104.984)
C2': (37.476,122.000,103.152)
O2': (37.113,121.086,102.131)
N1: (38.321,123.931,101.868)
O4: (41.322,125.083,99.469)
O2: (36.964,124.065,100.028)
C6: (39.583,124.116,102.396)
C5: (40.617,124.524,101.660)
O3': (35.276,121.655,104.062)
Image (generated by PyMOL):