Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02023:02022
Extra
PDB:
ATOM 1 O3' U A2022 35.539 122.001 104.310 1.00 41.14 O
ATOM 2 P C A2023 34.648 121.153 105.326 1.00 41.38 P
ATOM 3 OP1 C A2023 33.275 121.129 104.782 1.00 43.10 O
ATOM 4 OP2 C A2023 34.892 121.716 106.679 1.00 39.90 O
ATOM 5 O5' C A2023 35.279 119.695 105.265 1.00 39.65 O
ATOM 6 C5' C A2023 34.784 118.699 104.350 1.00 40.80 C
ATOM 7 C4' C A2023 35.135 117.311 104.849 1.00 40.57 C
ATOM 8 O4' C A2023 36.567 117.093 104.781 1.00 37.78 O
ATOM 9 C3' C A2023 34.750 117.058 106.292 1.00 40.48 C
ATOM 10 O3' C A2023 33.407 116.579 106.339 1.00 41.82 O
ATOM 11 C2' C A2023 35.775 116.025 106.747 1.00 39.09 C
ATOM 12 O2' C A2023 35.438 114.709 106.370 1.00 39.86 O
ATOM 13 C1' C A2023 37.011 116.448 105.953 1.00 38.68 C
ATOM 14 N1 C A2023 37.950 117.355 106.645 1.00 40.03 N
ATOM 15 C2 C A2023 38.716 116.867 107.699 1.00 39.50 C
ATOM 16 O2 C A2023 38.569 115.688 108.054 1.00 37.38 O
ATOM 17 N3 C A2023 39.598 117.694 108.307 1.00 39.75 N
ATOM 18 C4 C A2023 39.721 118.959 107.900 1.00 39.33 C
ATOM 19 N4 C A2023 40.598 119.741 108.523 1.00 40.95 N
ATOM 20 C5 C A2023 38.950 119.481 106.839 1.00 39.52 C
ATOM 21 C6 C A2023 38.083 118.657 106.246 1.00 41.02 C
ATOM 22 P U A2024 32.420 117.067 107.504 1.00 43.22 P
ATOM 23 OP1 U A2024 31.090 116.458 107.199 1.00 43.54 O
ATOM 24 OP2 U A2024 32.547 118.541 107.657 1.00 43.09 O
ATOM 25 O5' U A2024 32.991 116.383 108.817 1.00 39.07 O
TER
ATOM 1 O3' G B2021 40.611 124.779 107.634 1.00 39.33 O
ATOM 2 P U B2022 40.327 123.305 107.082 1.00 40.66 P
ATOM 3 OP1 U B2022 39.766 122.520 108.201 1.00 40.47 O
ATOM 4 OP2 U B2022 41.550 122.845 106.393 1.00 40.00 O
ATOM 5 O5' U B2022 39.199 123.480 105.976 1.00 40.02 O
ATOM 6 C5' U B2022 37.907 123.987 106.317 1.00 40.97 C
ATOM 7 C4' U B2022 36.936 123.746 105.187 1.00 41.59 C
ATOM 8 O4' U B2022 37.289 124.576 104.048 1.00 40.81 O
ATOM 9 C3' U B2022 36.869 122.315 104.665 1.00 42.18 C
ATOM 10 O3' U B2022 35.539 122.001 104.310 1.00 41.14 O
ATOM 11 C2' U B2022 37.738 122.369 103.417 1.00 42.94 C
ATOM 12 O2' U B2022 37.427 121.385 102.445 1.00 45.27 O
ATOM 13 C1' U B2022 37.423 123.766 102.901 1.00 41.86 C
ATOM 14 N1 U B2022 38.513 124.291 102.073 1.00 41.82 N
ATOM 15 C2 U B2022 38.247 124.541 100.744 1.00 40.28 C
ATOM 16 O2 U B2022 37.149 124.387 100.249 1.00 37.29 O
ATOM 17 N3 U B2022 39.324 124.976 100.015 1.00 41.46 N
ATOM 18 C4 U B2022 40.609 125.179 100.474 1.00 41.69 C
ATOM 19 O4 U B2022 41.491 125.496 99.683 1.00 43.21 O
ATOM 20 C5 U B2022 40.795 124.922 101.863 1.00 42.84 C
ATOM 21 C6 U B2022 39.767 124.501 102.598 1.00 42.94 C
ATOM 22 P C B2023 34.648 121.153 105.326 1.00 41.38 P
ATOM 23 OP1 C B2023 33.275 121.129 104.782 1.00 43.10 O
ATOM 24 OP2 C B2023 34.892 121.716 106.679 1.00 39.90 O
ATOM 25 O5' C B2023 35.279 119.695 105.265 1.00 39.65 O
TER
ATOM 2 P C A2023 34.648 121.153 105.326 1.00 41.38 P
ATOM 3 OP1 C A2023 33.275 121.129 104.782 1.00 43.10 O
ATOM 4 OP2 C A2023 34.892 121.716 106.679 1.00 39.90 O
ATOM 5 O5' C A2023 35.279 119.695 105.265 1.00 39.65 O
ATOM 6 C5' C A2023 34.784 118.699 104.350 1.00 40.80 C
ATOM 7 C4' C A2023 35.135 117.311 104.849 1.00 40.57 C
ATOM 8 O4' C A2023 36.567 117.093 104.781 1.00 37.78 O
ATOM 9 C3' C A2023 34.750 117.058 106.292 1.00 40.48 C
ATOM 10 O3' C A2023 33.407 116.579 106.339 1.00 41.82 O
ATOM 11 C2' C A2023 35.775 116.025 106.747 1.00 39.09 C
ATOM 12 O2' C A2023 35.438 114.709 106.370 1.00 39.86 O
ATOM 13 C1' C A2023 37.011 116.448 105.953 1.00 38.68 C
ATOM 14 N1 C A2023 37.950 117.355 106.645 1.00 40.03 N
ATOM 15 C2 C A2023 38.716 116.867 107.699 1.00 39.50 C
ATOM 16 O2 C A2023 38.569 115.688 108.054 1.00 37.38 O
ATOM 17 N3 C A2023 39.598 117.694 108.307 1.00 39.75 N
ATOM 18 C4 C A2023 39.721 118.959 107.900 1.00 39.33 C
ATOM 19 N4 C A2023 40.598 119.741 108.523 1.00 40.95 N
ATOM 20 C5 C A2023 38.950 119.481 106.839 1.00 39.52 C
ATOM 21 C6 C A2023 38.083 118.657 106.246 1.00 41.02 C
ATOM 22 P U A2024 32.420 117.067 107.504 1.00 43.22 P
ATOM 23 OP1 U A2024 31.090 116.458 107.199 1.00 43.54 O
ATOM 24 OP2 U A2024 32.547 118.541 107.657 1.00 43.09 O
ATOM 25 O5' U A2024 32.991 116.383 108.817 1.00 39.07 O
TER
ATOM 1 O3' G B2021 40.611 124.779 107.634 1.00 39.33 O
ATOM 2 P U B2022 40.327 123.305 107.082 1.00 40.66 P
ATOM 3 OP1 U B2022 39.766 122.520 108.201 1.00 40.47 O
ATOM 4 OP2 U B2022 41.550 122.845 106.393 1.00 40.00 O
ATOM 5 O5' U B2022 39.199 123.480 105.976 1.00 40.02 O
ATOM 6 C5' U B2022 37.907 123.987 106.317 1.00 40.97 C
ATOM 7 C4' U B2022 36.936 123.746 105.187 1.00 41.59 C
ATOM 8 O4' U B2022 37.289 124.576 104.048 1.00 40.81 O
ATOM 9 C3' U B2022 36.869 122.315 104.665 1.00 42.18 C
ATOM 10 O3' U B2022 35.539 122.001 104.310 1.00 41.14 O
ATOM 11 C2' U B2022 37.738 122.369 103.417 1.00 42.94 C
ATOM 12 O2' U B2022 37.427 121.385 102.445 1.00 45.27 O
ATOM 13 C1' U B2022 37.423 123.766 102.901 1.00 41.86 C
ATOM 14 N1 U B2022 38.513 124.291 102.073 1.00 41.82 N
ATOM 15 C2 U B2022 38.247 124.541 100.744 1.00 40.28 C
ATOM 16 O2 U B2022 37.149 124.387 100.249 1.00 37.29 O
ATOM 17 N3 U B2022 39.324 124.976 100.015 1.00 41.46 N
ATOM 18 C4 U B2022 40.609 125.179 100.474 1.00 41.69 C
ATOM 19 O4 U B2022 41.491 125.496 99.683 1.00 43.21 O
ATOM 20 C5 U B2022 40.795 124.922 101.863 1.00 42.84 C
ATOM 21 C6 U B2022 39.767 124.501 102.598 1.00 42.94 C
ATOM 22 P C B2023 34.648 121.153 105.326 1.00 41.38 P
ATOM 23 OP1 C B2023 33.275 121.129 104.782 1.00 43.10 O
ATOM 24 OP2 C B2023 34.892 121.716 106.679 1.00 39.90 O
ATOM 25 O5' C B2023 35.279 119.695 105.265 1.00 39.65 O
TER
Atoms:
C2: (38.716,116.867,107.699)
OP1: (33.275,121.129,104.782)
OP2: (34.892,121.716,106.679)
C4: (39.721,118.959,107.900)
O5': (35.279,119.695,105.265)
C3': (34.750,117.058,106.292)
C1': (37.011,116.448,105.953)
O4': (36.567,117.093,104.781)
C5': (34.784,118.699,104.350)
P: (34.648,121.153,105.326)
O2: (38.569,115.688,108.054)
C4': (35.135,117.311,104.849)
C2': (35.775,116.025,106.747)
O2': (35.438,114.709,106.370)
N1: (37.950,117.355,106.645)
N3: (39.598,117.694,108.307)
N4: (40.598,119.741,108.523)
C6: (38.083,118.657,106.246)
C5: (38.950,119.481,106.839)
O3': (33.407,116.579,106.339)
OP1: (33.275,121.129,104.782)
OP2: (34.892,121.716,106.679)
C4: (39.721,118.959,107.900)
O5': (35.279,119.695,105.265)
C3': (34.750,117.058,106.292)
C1': (37.011,116.448,105.953)
O4': (36.567,117.093,104.781)
C5': (34.784,118.699,104.350)
P: (34.648,121.153,105.326)
O2: (38.569,115.688,108.054)
C4': (35.135,117.311,104.849)
C2': (35.775,116.025,106.747)
O2': (35.438,114.709,106.370)
N1: (37.950,117.355,106.645)
N3: (39.598,117.694,108.307)
N4: (40.598,119.741,108.523)
C6: (38.083,118.657,106.246)
C5: (38.950,119.481,106.839)
O3': (33.407,116.579,106.339)
C4: (40.609,125.179,100.474)
N3: (39.324,124.976,100.015)
OP1: (39.766,122.520,108.201)
OP2: (41.550,122.845,106.393)
C2: (38.247,124.541,100.744)
C1': (37.423,123.766,102.901)
C3': (36.869,122.315,104.665)
O5': (39.199,123.480,105.976)
O4': (37.289,124.576,104.048)
C5': (37.907,123.987,106.317)
P: (40.327,123.305,107.082)
C4': (36.936,123.746,105.187)
C2': (37.738,122.369,103.417)
O2': (37.427,121.385,102.445)
N1: (38.513,124.291,102.073)
O4: (41.491,125.496,99.683)
O2: (37.149,124.387,100.249)
C6: (39.767,124.501,102.598)
C5: (40.795,124.922,101.863)
O3': (35.539,122.001,104.310)
N3: (39.324,124.976,100.015)
OP1: (39.766,122.520,108.201)
OP2: (41.550,122.845,106.393)
C2: (38.247,124.541,100.744)
C1': (37.423,123.766,102.901)
C3': (36.869,122.315,104.665)
O5': (39.199,123.480,105.976)
O4': (37.289,124.576,104.048)
C5': (37.907,123.987,106.317)
P: (40.327,123.305,107.082)
C4': (36.936,123.746,105.187)
C2': (37.738,122.369,103.417)
O2': (37.427,121.385,102.445)
N1: (38.513,124.291,102.073)
O4: (41.491,125.496,99.683)
O2: (37.149,124.387,100.249)
C6: (39.767,124.501,102.598)
C5: (40.795,124.922,101.863)
O3': (35.539,122.001,104.310)
Image (generated by PyMOL):