Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01948:01923
Extra
PDB:
ATOM 1 O3' G A1947 113.362 123.865 117.905 1.00 57.61 O
ATOM 2 P C A1948 113.452 122.642 116.874 1.00 59.83 P
ATOM 3 OP1 C A1948 114.879 122.273 116.804 1.00 60.99 O
ATOM 4 OP2 C A1948 112.733 122.999 115.624 1.00 60.00 O
ATOM 5 O5' C A1948 112.656 121.477 117.610 1.00 58.56 O
ATOM 6 C5' C A1948 113.093 120.999 118.889 1.00 60.18 C
ATOM 7 C4' C A1948 112.187 119.899 119.385 1.00 62.17 C
ATOM 8 O4' C A1948 110.864 120.423 119.657 1.00 63.91 O
ATOM 9 C3' C A1948 111.934 118.747 118.430 1.00 62.06 C
ATOM 10 O3' C A1948 112.998 117.808 118.455 1.00 62.38 O
ATOM 11 C2' C A1948 110.649 118.146 118.986 1.00 62.48 C
ATOM 12 O2' C A1948 110.867 117.301 120.093 1.00 61.76 O
ATOM 13 C1' C A1948 109.901 119.399 119.446 1.00 64.17 C
ATOM 14 N1 C A1948 108.899 119.866 118.467 1.00 65.49 N
ATOM 15 C2 C A1948 107.567 119.447 118.618 1.00 65.60 C
ATOM 16 O2 C A1948 107.270 118.702 119.572 1.00 64.33 O
ATOM 17 N3 C A1948 106.641 119.862 117.722 1.00 66.66 N
ATOM 18 C4 C A1948 106.998 120.655 116.708 1.00 66.67 C
ATOM 19 N4 C A1948 106.049 121.033 115.844 1.00 66.53 N
ATOM 20 C5 C A1948 108.342 121.096 116.533 1.00 66.38 C
ATOM 21 C6 C A1948 109.250 120.685 117.427 1.00 65.59 C
ATOM 22 P U A1949 113.329 116.950 117.144 1.00 63.11 P
ATOM 23 OP1 U A1949 114.072 115.741 117.565 1.00 62.64 O
ATOM 24 OP2 U A1949 113.927 117.875 116.149 1.00 62.93 O
ATOM 25 O5' U A1949 111.903 116.480 116.613 1.00 66.76 O
TER
ATOM 1 O3' G B1922 105.905 122.066 110.366 1.00 55.14 O
ATOM 2 P U B1923 105.358 121.934 111.871 1.00 57.70 P
ATOM 3 OP1 U B1923 104.389 123.036 112.120 1.00 56.51 O
ATOM 4 OP2 U B1923 106.540 121.784 112.763 1.00 60.16 O
ATOM 5 O5' U B1923 104.548 120.561 111.881 1.00 56.13 O
ATOM 6 C5' U B1923 103.727 120.184 110.759 1.00 54.94 C
ATOM 7 C4' U B1923 102.282 120.006 111.174 1.00 52.45 C
ATOM 8 O4' U B1923 102.093 118.721 111.822 1.00 50.95 O
ATOM 9 C3' U B1923 101.674 121.058 112.096 1.00 51.46 C
ATOM 10 O3' U B1923 100.348 121.330 111.677 1.00 52.32 O
ATOM 11 C2' U B1923 101.656 120.345 113.447 1.00 52.14 C
ATOM 12 O2' U B1923 100.630 120.789 114.313 1.00 52.50 O
ATOM 13 C1' U B1923 101.388 118.903 113.028 1.00 51.78 C
ATOM 14 N1 U B1923 101.843 117.892 113.995 1.00 53.57 N
ATOM 15 C2 U B1923 100.879 117.109 114.608 1.00 54.95 C
ATOM 16 O2 U B1923 99.683 117.232 114.396 1.00 56.37 O
ATOM 17 N3 U B1923 101.364 116.173 115.484 1.00 55.52 N
ATOM 18 C4 U B1923 102.683 115.942 115.808 1.00 56.31 C
ATOM 19 O4 U B1923 102.962 115.024 116.588 1.00 58.19 O
ATOM 20 C5 U B1923 103.620 116.797 115.144 1.00 54.97 C
ATOM 21 C6 U B1923 103.180 117.717 114.282 1.00 54.04 C
ATOM 22 P A B1924 99.958 122.805 111.167 1.00 53.27 P
ATOM 23 OP1 A B1924 100.412 123.772 112.203 1.00 53.52 O
ATOM 24 OP2 A B1924 98.527 122.788 110.760 1.00 54.40 O
ATOM 25 O5' A B1924 100.837 123.011 109.853 1.00 51.41 O
TER
ATOM 2 P C A1948 113.452 122.642 116.874 1.00 59.83 P
ATOM 3 OP1 C A1948 114.879 122.273 116.804 1.00 60.99 O
ATOM 4 OP2 C A1948 112.733 122.999 115.624 1.00 60.00 O
ATOM 5 O5' C A1948 112.656 121.477 117.610 1.00 58.56 O
ATOM 6 C5' C A1948 113.093 120.999 118.889 1.00 60.18 C
ATOM 7 C4' C A1948 112.187 119.899 119.385 1.00 62.17 C
ATOM 8 O4' C A1948 110.864 120.423 119.657 1.00 63.91 O
ATOM 9 C3' C A1948 111.934 118.747 118.430 1.00 62.06 C
ATOM 10 O3' C A1948 112.998 117.808 118.455 1.00 62.38 O
ATOM 11 C2' C A1948 110.649 118.146 118.986 1.00 62.48 C
ATOM 12 O2' C A1948 110.867 117.301 120.093 1.00 61.76 O
ATOM 13 C1' C A1948 109.901 119.399 119.446 1.00 64.17 C
ATOM 14 N1 C A1948 108.899 119.866 118.467 1.00 65.49 N
ATOM 15 C2 C A1948 107.567 119.447 118.618 1.00 65.60 C
ATOM 16 O2 C A1948 107.270 118.702 119.572 1.00 64.33 O
ATOM 17 N3 C A1948 106.641 119.862 117.722 1.00 66.66 N
ATOM 18 C4 C A1948 106.998 120.655 116.708 1.00 66.67 C
ATOM 19 N4 C A1948 106.049 121.033 115.844 1.00 66.53 N
ATOM 20 C5 C A1948 108.342 121.096 116.533 1.00 66.38 C
ATOM 21 C6 C A1948 109.250 120.685 117.427 1.00 65.59 C
ATOM 22 P U A1949 113.329 116.950 117.144 1.00 63.11 P
ATOM 23 OP1 U A1949 114.072 115.741 117.565 1.00 62.64 O
ATOM 24 OP2 U A1949 113.927 117.875 116.149 1.00 62.93 O
ATOM 25 O5' U A1949 111.903 116.480 116.613 1.00 66.76 O
TER
ATOM 1 O3' G B1922 105.905 122.066 110.366 1.00 55.14 O
ATOM 2 P U B1923 105.358 121.934 111.871 1.00 57.70 P
ATOM 3 OP1 U B1923 104.389 123.036 112.120 1.00 56.51 O
ATOM 4 OP2 U B1923 106.540 121.784 112.763 1.00 60.16 O
ATOM 5 O5' U B1923 104.548 120.561 111.881 1.00 56.13 O
ATOM 6 C5' U B1923 103.727 120.184 110.759 1.00 54.94 C
ATOM 7 C4' U B1923 102.282 120.006 111.174 1.00 52.45 C
ATOM 8 O4' U B1923 102.093 118.721 111.822 1.00 50.95 O
ATOM 9 C3' U B1923 101.674 121.058 112.096 1.00 51.46 C
ATOM 10 O3' U B1923 100.348 121.330 111.677 1.00 52.32 O
ATOM 11 C2' U B1923 101.656 120.345 113.447 1.00 52.14 C
ATOM 12 O2' U B1923 100.630 120.789 114.313 1.00 52.50 O
ATOM 13 C1' U B1923 101.388 118.903 113.028 1.00 51.78 C
ATOM 14 N1 U B1923 101.843 117.892 113.995 1.00 53.57 N
ATOM 15 C2 U B1923 100.879 117.109 114.608 1.00 54.95 C
ATOM 16 O2 U B1923 99.683 117.232 114.396 1.00 56.37 O
ATOM 17 N3 U B1923 101.364 116.173 115.484 1.00 55.52 N
ATOM 18 C4 U B1923 102.683 115.942 115.808 1.00 56.31 C
ATOM 19 O4 U B1923 102.962 115.024 116.588 1.00 58.19 O
ATOM 20 C5 U B1923 103.620 116.797 115.144 1.00 54.97 C
ATOM 21 C6 U B1923 103.180 117.717 114.282 1.00 54.04 C
ATOM 22 P A B1924 99.958 122.805 111.167 1.00 53.27 P
ATOM 23 OP1 A B1924 100.412 123.772 112.203 1.00 53.52 O
ATOM 24 OP2 A B1924 98.527 122.788 110.760 1.00 54.40 O
ATOM 25 O5' A B1924 100.837 123.011 109.853 1.00 51.41 O
TER
Atoms:
C2: (107.567,119.447,118.618)
OP1: (114.879,122.273,116.804)
OP2: (112.733,122.999,115.624)
C4: (106.998,120.655,116.708)
O5': (112.656,121.477,117.610)
C3': (111.934,118.747,118.430)
C1': (109.901,119.399,119.446)
O4': (110.864,120.423,119.657)
C5': (113.093,120.999,118.889)
P: (113.452,122.642,116.874)
O2: (107.270,118.702,119.572)
C4': (112.187,119.899,119.385)
C2': (110.649,118.146,118.986)
O2': (110.867,117.301,120.093)
N1: (108.899,119.866,118.467)
N3: (106.641,119.862,117.722)
N4: (106.049,121.033,115.844)
C6: (109.250,120.685,117.427)
C5: (108.342,121.096,116.533)
O3': (112.998,117.808,118.455)
OP1: (114.879,122.273,116.804)
OP2: (112.733,122.999,115.624)
C4: (106.998,120.655,116.708)
O5': (112.656,121.477,117.610)
C3': (111.934,118.747,118.430)
C1': (109.901,119.399,119.446)
O4': (110.864,120.423,119.657)
C5': (113.093,120.999,118.889)
P: (113.452,122.642,116.874)
O2: (107.270,118.702,119.572)
C4': (112.187,119.899,119.385)
C2': (110.649,118.146,118.986)
O2': (110.867,117.301,120.093)
N1: (108.899,119.866,118.467)
N3: (106.641,119.862,117.722)
N4: (106.049,121.033,115.844)
C6: (109.250,120.685,117.427)
C5: (108.342,121.096,116.533)
O3': (112.998,117.808,118.455)
C4: (102.683,115.942,115.808)
N3: (101.364,116.173,115.484)
OP1: (104.389,123.036,112.120)
OP2: (106.540,121.784,112.763)
C2: (100.879,117.109,114.608)
C1': (101.388,118.903,113.028)
C3': (101.674,121.058,112.096)
O5': (104.548,120.561,111.881)
O4': (102.093,118.721,111.822)
C5': (103.727,120.184,110.759)
P: (105.358,121.934,111.871)
C4': (102.282,120.006,111.174)
C2': (101.656,120.345,113.447)
O2': (100.630,120.789,114.313)
N1: (101.843,117.892,113.995)
O4: (102.962,115.024,116.588)
O2: (99.683,117.232,114.396)
C6: (103.180,117.717,114.282)
C5: (103.620,116.797,115.144)
O3': (100.348,121.330,111.677)
N3: (101.364,116.173,115.484)
OP1: (104.389,123.036,112.120)
OP2: (106.540,121.784,112.763)
C2: (100.879,117.109,114.608)
C1': (101.388,118.903,113.028)
C3': (101.674,121.058,112.096)
O5': (104.548,120.561,111.881)
O4': (102.093,118.721,111.822)
C5': (103.727,120.184,110.759)
P: (105.358,121.934,111.871)
C4': (102.282,120.006,111.174)
C2': (101.656,120.345,113.447)
O2': (100.630,120.789,114.313)
N1: (101.843,117.892,113.995)
O4: (102.962,115.024,116.588)
O2: (99.683,117.232,114.396)
C6: (103.180,117.717,114.282)
C5: (103.620,116.797,115.144)
O3': (100.348,121.330,111.677)
Image (generated by PyMOL):