Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:02023:02022
Extra
PDB:
ATOM 1 O3' U A2022 35.102 121.664 104.132 1.00 35.25 O
ATOM 2 P C A2023 34.179 120.792 105.111 1.00 35.32 P
ATOM 3 OP1 C A2023 32.817 120.755 104.532 1.00 33.53 O
ATOM 4 OP2 C A2023 34.376 121.304 106.493 1.00 35.32 O
ATOM 5 O5' C A2023 34.822 119.341 105.041 1.00 33.94 O
ATOM 6 C5' C A2023 34.418 118.396 104.040 1.00 33.03 C
ATOM 7 C4' C A2023 34.800 117.004 104.474 1.00 32.72 C
ATOM 8 O4' C A2023 36.235 116.850 104.411 1.00 30.95 O
ATOM 9 C3' C A2023 34.425 116.701 105.910 1.00 32.28 C
ATOM 10 O3' C A2023 33.110 116.182 105.947 1.00 33.29 O
ATOM 11 C2' C A2023 35.460 115.671 106.333 1.00 31.53 C
ATOM 12 O2' C A2023 35.088 114.367 105.957 1.00 32.63 O
ATOM 13 C1' C A2023 36.685 116.118 105.529 1.00 30.45 C
ATOM 14 N1 C A2023 37.666 116.945 106.246 1.00 29.22 N
ATOM 15 C2 C A2023 38.423 116.361 107.255 1.00 29.08 C
ATOM 16 O2 C A2023 38.207 115.181 107.559 1.00 29.66 O
ATOM 17 N3 C A2023 39.369 117.096 107.879 1.00 29.72 N
ATOM 18 C4 C A2023 39.558 118.370 107.535 1.00 29.47 C
ATOM 19 N4 C A2023 40.507 119.054 108.172 1.00 29.76 N
ATOM 20 C5 C A2023 38.782 118.998 106.523 1.00 29.14 C
ATOM 21 C6 C A2023 37.854 118.259 105.914 1.00 28.64 C
ATOM 22 P U A2024 32.101 116.664 107.087 1.00 37.35 P
ATOM 23 OP1 U A2024 30.812 115.999 106.771 1.00 36.99 O
ATOM 24 OP2 U A2024 32.157 118.141 107.210 1.00 37.14 O
ATOM 25 O5' U A2024 32.705 116.032 108.415 1.00 35.10 O
TER
ATOM 1 O3' G B2021 40.338 124.279 107.296 1.00 31.71 O
ATOM 2 P U B2022 40.063 122.809 106.737 1.00 33.28 P
ATOM 3 OP1 U B2022 39.548 122.030 107.885 1.00 34.35 O
ATOM 4 OP2 U B2022 41.261 122.340 106.002 1.00 31.86 O
ATOM 5 O5' U B2022 38.890 123.005 105.683 1.00 31.94 O
ATOM 6 C5' U B2022 37.619 123.505 106.092 1.00 31.75 C
ATOM 7 C4' U B2022 36.617 123.319 104.989 1.00 33.89 C
ATOM 8 O4' U B2022 37.019 124.123 103.844 1.00 35.61 O
ATOM 9 C3' U B2022 36.461 121.893 104.474 1.00 35.10 C
ATOM 10 O3' U B2022 35.102 121.664 104.132 1.00 35.25 O
ATOM 11 C2' U B2022 37.333 121.890 103.221 1.00 36.63 C
ATOM 12 O2' U B2022 36.939 120.945 102.240 1.00 39.03 O
ATOM 13 C1' U B2022 37.115 123.304 102.700 1.00 35.75 C
ATOM 14 N1 U B2022 38.221 123.785 101.860 1.00 36.09 N
ATOM 15 C2 U B2022 37.929 124.113 100.546 1.00 36.13 C
ATOM 16 O2 U B2022 36.808 124.039 100.076 1.00 33.81 O
ATOM 17 N3 U B2022 39.005 124.530 99.801 1.00 37.77 N
ATOM 18 C4 U B2022 40.315 124.651 100.223 1.00 38.07 C
ATOM 19 O4 U B2022 41.180 125.000 99.417 1.00 38.53 O
ATOM 20 C5 U B2022 40.534 124.307 101.598 1.00 36.93 C
ATOM 21 C6 U B2022 39.507 123.897 102.350 1.00 36.17 C
ATOM 22 P C B2023 34.179 120.792 105.111 1.00 35.32 P
ATOM 23 OP1 C B2023 32.817 120.755 104.532 1.00 33.53 O
ATOM 24 OP2 C B2023 34.376 121.304 106.493 1.00 35.32 O
ATOM 25 O5' C B2023 34.822 119.341 105.041 1.00 33.94 O
TER
ATOM 2 P C A2023 34.179 120.792 105.111 1.00 35.32 P
ATOM 3 OP1 C A2023 32.817 120.755 104.532 1.00 33.53 O
ATOM 4 OP2 C A2023 34.376 121.304 106.493 1.00 35.32 O
ATOM 5 O5' C A2023 34.822 119.341 105.041 1.00 33.94 O
ATOM 6 C5' C A2023 34.418 118.396 104.040 1.00 33.03 C
ATOM 7 C4' C A2023 34.800 117.004 104.474 1.00 32.72 C
ATOM 8 O4' C A2023 36.235 116.850 104.411 1.00 30.95 O
ATOM 9 C3' C A2023 34.425 116.701 105.910 1.00 32.28 C
ATOM 10 O3' C A2023 33.110 116.182 105.947 1.00 33.29 O
ATOM 11 C2' C A2023 35.460 115.671 106.333 1.00 31.53 C
ATOM 12 O2' C A2023 35.088 114.367 105.957 1.00 32.63 O
ATOM 13 C1' C A2023 36.685 116.118 105.529 1.00 30.45 C
ATOM 14 N1 C A2023 37.666 116.945 106.246 1.00 29.22 N
ATOM 15 C2 C A2023 38.423 116.361 107.255 1.00 29.08 C
ATOM 16 O2 C A2023 38.207 115.181 107.559 1.00 29.66 O
ATOM 17 N3 C A2023 39.369 117.096 107.879 1.00 29.72 N
ATOM 18 C4 C A2023 39.558 118.370 107.535 1.00 29.47 C
ATOM 19 N4 C A2023 40.507 119.054 108.172 1.00 29.76 N
ATOM 20 C5 C A2023 38.782 118.998 106.523 1.00 29.14 C
ATOM 21 C6 C A2023 37.854 118.259 105.914 1.00 28.64 C
ATOM 22 P U A2024 32.101 116.664 107.087 1.00 37.35 P
ATOM 23 OP1 U A2024 30.812 115.999 106.771 1.00 36.99 O
ATOM 24 OP2 U A2024 32.157 118.141 107.210 1.00 37.14 O
ATOM 25 O5' U A2024 32.705 116.032 108.415 1.00 35.10 O
TER
ATOM 1 O3' G B2021 40.338 124.279 107.296 1.00 31.71 O
ATOM 2 P U B2022 40.063 122.809 106.737 1.00 33.28 P
ATOM 3 OP1 U B2022 39.548 122.030 107.885 1.00 34.35 O
ATOM 4 OP2 U B2022 41.261 122.340 106.002 1.00 31.86 O
ATOM 5 O5' U B2022 38.890 123.005 105.683 1.00 31.94 O
ATOM 6 C5' U B2022 37.619 123.505 106.092 1.00 31.75 C
ATOM 7 C4' U B2022 36.617 123.319 104.989 1.00 33.89 C
ATOM 8 O4' U B2022 37.019 124.123 103.844 1.00 35.61 O
ATOM 9 C3' U B2022 36.461 121.893 104.474 1.00 35.10 C
ATOM 10 O3' U B2022 35.102 121.664 104.132 1.00 35.25 O
ATOM 11 C2' U B2022 37.333 121.890 103.221 1.00 36.63 C
ATOM 12 O2' U B2022 36.939 120.945 102.240 1.00 39.03 O
ATOM 13 C1' U B2022 37.115 123.304 102.700 1.00 35.75 C
ATOM 14 N1 U B2022 38.221 123.785 101.860 1.00 36.09 N
ATOM 15 C2 U B2022 37.929 124.113 100.546 1.00 36.13 C
ATOM 16 O2 U B2022 36.808 124.039 100.076 1.00 33.81 O
ATOM 17 N3 U B2022 39.005 124.530 99.801 1.00 37.77 N
ATOM 18 C4 U B2022 40.315 124.651 100.223 1.00 38.07 C
ATOM 19 O4 U B2022 41.180 125.000 99.417 1.00 38.53 O
ATOM 20 C5 U B2022 40.534 124.307 101.598 1.00 36.93 C
ATOM 21 C6 U B2022 39.507 123.897 102.350 1.00 36.17 C
ATOM 22 P C B2023 34.179 120.792 105.111 1.00 35.32 P
ATOM 23 OP1 C B2023 32.817 120.755 104.532 1.00 33.53 O
ATOM 24 OP2 C B2023 34.376 121.304 106.493 1.00 35.32 O
ATOM 25 O5' C B2023 34.822 119.341 105.041 1.00 33.94 O
TER
Atoms:
C2: (38.423,116.361,107.255)
OP1: (32.817,120.755,104.532)
OP2: (34.376,121.304,106.493)
C4: (39.558,118.370,107.535)
O5': (34.822,119.341,105.041)
C3': (34.425,116.701,105.910)
C1': (36.685,116.118,105.529)
O4': (36.235,116.850,104.411)
C5': (34.418,118.396,104.040)
P: (34.179,120.792,105.111)
O2: (38.207,115.181,107.559)
C4': (34.800,117.004,104.474)
C2': (35.460,115.671,106.333)
O2': (35.088,114.367,105.957)
N1: (37.666,116.945,106.246)
N3: (39.369,117.096,107.879)
N4: (40.507,119.054,108.172)
C6: (37.854,118.259,105.914)
C5: (38.782,118.998,106.523)
O3': (33.110,116.182,105.947)
OP1: (32.817,120.755,104.532)
OP2: (34.376,121.304,106.493)
C4: (39.558,118.370,107.535)
O5': (34.822,119.341,105.041)
C3': (34.425,116.701,105.910)
C1': (36.685,116.118,105.529)
O4': (36.235,116.850,104.411)
C5': (34.418,118.396,104.040)
P: (34.179,120.792,105.111)
O2: (38.207,115.181,107.559)
C4': (34.800,117.004,104.474)
C2': (35.460,115.671,106.333)
O2': (35.088,114.367,105.957)
N1: (37.666,116.945,106.246)
N3: (39.369,117.096,107.879)
N4: (40.507,119.054,108.172)
C6: (37.854,118.259,105.914)
C5: (38.782,118.998,106.523)
O3': (33.110,116.182,105.947)
C4: (40.315,124.651,100.223)
N3: (39.005,124.530,99.801)
OP1: (39.548,122.030,107.885)
OP2: (41.261,122.340,106.002)
C2: (37.929,124.113,100.546)
C1': (37.115,123.304,102.700)
C3': (36.461,121.893,104.474)
O5': (38.890,123.005,105.683)
O4': (37.019,124.123,103.844)
C5': (37.619,123.505,106.092)
P: (40.063,122.809,106.737)
C4': (36.617,123.319,104.989)
C2': (37.333,121.890,103.221)
O2': (36.939,120.945,102.240)
N1: (38.221,123.785,101.860)
O4: (41.180,125.000,99.417)
O2: (36.808,124.039,100.076)
C6: (39.507,123.897,102.350)
C5: (40.534,124.307,101.598)
O3': (35.102,121.664,104.132)
N3: (39.005,124.530,99.801)
OP1: (39.548,122.030,107.885)
OP2: (41.261,122.340,106.002)
C2: (37.929,124.113,100.546)
C1': (37.115,123.304,102.700)
C3': (36.461,121.893,104.474)
O5': (38.890,123.005,105.683)
O4': (37.019,124.123,103.844)
C5': (37.619,123.505,106.092)
P: (40.063,122.809,106.737)
C4': (36.617,123.319,104.989)
C2': (37.333,121.890,103.221)
O2': (36.939,120.945,102.240)
N1: (38.221,123.785,101.860)
O4: (41.180,125.000,99.417)
O2: (36.808,124.039,100.076)
C6: (39.507,123.897,102.350)
C5: (40.534,124.307,101.598)
O3': (35.102,121.664,104.132)
Image (generated by PyMOL):