Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12875:12873
Extra
PDB:
ATOM 1 O3' A A2874 30.841 17.468 1.046 1.00 52.06 O
ATOM 2 P A A2875 31.019 18.929 1.656 1.00 47.81 P
ATOM 3 OP1 A A2875 32.037 18.841 2.703 1.00 47.27 O
ATOM 4 OP2 A A2875 29.694 19.409 2.035 1.00 47.88 O
ATOM 5 O5' A A2875 31.577 19.754 0.407 1.00 48.38 O
ATOM 6 C5' A A2875 32.741 19.324 -0.281 1.00 48.47 C
ATOM 7 C4' A A2875 33.147 20.292 -1.354 1.00 49.03 C
ATOM 8 O4' A A2875 32.372 20.066 -2.560 1.00 49.59 O
ATOM 9 C3' A A2875 32.904 21.741 -1.072 1.00 49.18 C
ATOM 10 O3' A A2875 33.826 22.280 -0.177 1.00 48.81 O
ATOM 11 C2' A A2875 32.978 22.345 -2.460 1.00 49.86 C
ATOM 12 O2' A A2875 34.316 22.432 -2.895 1.00 49.93 O
ATOM 13 C1' A A2875 32.276 21.272 -3.282 1.00 50.11 C
ATOM 14 N9 A A2875 30.860 21.612 -3.466 1.00 50.40 N
ATOM 15 C8 A A2875 29.681 21.189 -2.890 1.00 50.22 C
ATOM 16 N7 A A2875 28.623 21.828 -3.323 1.00 50.65 N
ATOM 17 C5 A A2875 29.154 22.729 -4.208 1.00 51.13 C
ATOM 18 C6 A A2875 28.595 23.705 -5.013 1.00 51.73 C
ATOM 19 N6 A A2875 27.308 23.961 -5.072 1.00 51.97 N
ATOM 20 N1 A A2875 29.429 24.413 -5.796 1.00 52.11 N
ATOM 21 C2 A A2875 30.747 24.166 -5.766 1.00 51.89 C
ATOM 22 N3 A A2875 31.391 23.287 -5.051 1.00 51.33 N
ATOM 23 C4 A A2875 30.521 22.609 -4.307 1.00 50.98 C
ATOM 24 P G A2876 33.367 23.418 0.863 1.00 53.79 P
ATOM 25 OP1 G A2876 34.616 23.958 1.487 1.00 53.52 O
ATOM 26 OP2 G A2876 32.322 22.821 1.733 1.00 53.44 O
ATOM 27 O5' G A2876 32.710 24.510 -0.061 1.00 54.44 O
TER
ATOM 1 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 2 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U B2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U B2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U B2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U B2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U B2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U B2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U B2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U B2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U B2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U B2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U B2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U B2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U B2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U B2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U B2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U B2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A B2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A B2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A B2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A B2874 26.891 15.766 1.987 1.00 51.91 O
TER
ATOM 2 P A A2875 31.019 18.929 1.656 1.00 47.81 P
ATOM 3 OP1 A A2875 32.037 18.841 2.703 1.00 47.27 O
ATOM 4 OP2 A A2875 29.694 19.409 2.035 1.00 47.88 O
ATOM 5 O5' A A2875 31.577 19.754 0.407 1.00 48.38 O
ATOM 6 C5' A A2875 32.741 19.324 -0.281 1.00 48.47 C
ATOM 7 C4' A A2875 33.147 20.292 -1.354 1.00 49.03 C
ATOM 8 O4' A A2875 32.372 20.066 -2.560 1.00 49.59 O
ATOM 9 C3' A A2875 32.904 21.741 -1.072 1.00 49.18 C
ATOM 10 O3' A A2875 33.826 22.280 -0.177 1.00 48.81 O
ATOM 11 C2' A A2875 32.978 22.345 -2.460 1.00 49.86 C
ATOM 12 O2' A A2875 34.316 22.432 -2.895 1.00 49.93 O
ATOM 13 C1' A A2875 32.276 21.272 -3.282 1.00 50.11 C
ATOM 14 N9 A A2875 30.860 21.612 -3.466 1.00 50.40 N
ATOM 15 C8 A A2875 29.681 21.189 -2.890 1.00 50.22 C
ATOM 16 N7 A A2875 28.623 21.828 -3.323 1.00 50.65 N
ATOM 17 C5 A A2875 29.154 22.729 -4.208 1.00 51.13 C
ATOM 18 C6 A A2875 28.595 23.705 -5.013 1.00 51.73 C
ATOM 19 N6 A A2875 27.308 23.961 -5.072 1.00 51.97 N
ATOM 20 N1 A A2875 29.429 24.413 -5.796 1.00 52.11 N
ATOM 21 C2 A A2875 30.747 24.166 -5.766 1.00 51.89 C
ATOM 22 N3 A A2875 31.391 23.287 -5.051 1.00 51.33 N
ATOM 23 C4 A A2875 30.521 22.609 -4.307 1.00 50.98 C
ATOM 24 P G A2876 33.367 23.418 0.863 1.00 53.79 P
ATOM 25 OP1 G A2876 34.616 23.958 1.487 1.00 53.52 O
ATOM 26 OP2 G A2876 32.322 22.821 1.733 1.00 53.44 O
ATOM 27 O5' G A2876 32.710 24.510 -0.061 1.00 54.44 O
TER
ATOM 1 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 2 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U B2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U B2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U B2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U B2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U B2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U B2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U B2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U B2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U B2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U B2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U B2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U B2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U B2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U B2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U B2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U B2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A B2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A B2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A B2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A B2874 26.891 15.766 1.987 1.00 51.91 O
TER
Atoms:
OP1: (32.037,18.841,2.703)
OP2: (29.694,19.409,2.035)
C3': (32.904,21.741,-1.072)
C1': (32.276,21.272,-3.282)
C5': (32.741,19.324,-0.281)
O4': (32.372,20.066,-2.560)
C8: (29.681,21.189,-2.890)
O2': (34.316,22.432,-2.895)
C6: (28.595,23.705,-5.013)
C5: (29.154,22.729,-4.208)
C4: (30.521,22.609,-4.307)
P: (31.019,18.929,1.656)
C4': (33.147,20.292,-1.354)
C2': (32.978,22.345,-2.460)
C2: (30.747,24.166,-5.766)
N1: (29.429,24.413,-5.796)
N3: (31.391,23.287,-5.051)
N6: (27.308,23.961,-5.072)
N7: (28.623,21.828,-3.323)
N9: (30.860,21.612,-3.466)
O5': (31.577,19.754,0.407)
O3': (33.826,22.280,-0.177)
OP2: (29.694,19.409,2.035)
C3': (32.904,21.741,-1.072)
C1': (32.276,21.272,-3.282)
C5': (32.741,19.324,-0.281)
O4': (32.372,20.066,-2.560)
C8: (29.681,21.189,-2.890)
O2': (34.316,22.432,-2.895)
C6: (28.595,23.705,-5.013)
C5: (29.154,22.729,-4.208)
C4: (30.521,22.609,-4.307)
P: (31.019,18.929,1.656)
C4': (33.147,20.292,-1.354)
C2': (32.978,22.345,-2.460)
C2: (30.747,24.166,-5.766)
N1: (29.429,24.413,-5.796)
N3: (31.391,23.287,-5.051)
N6: (27.308,23.961,-5.072)
N7: (28.623,21.828,-3.323)
N9: (30.860,21.612,-3.466)
O5': (31.577,19.754,0.407)
O3': (33.826,22.280,-0.177)
C4: (25.013,21.859,-2.506)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
Image (generated by PyMOL):