Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A1353:A1352
Extra
PDB:
ATOM 1 O3' U A1352 6.926 -52.007 -29.313 1.00 40.35 O
ATOM 2 P C A1353 5.372 -52.070 -29.744 1.00 46.26 P
ATOM 3 OP1 C A1353 5.241 -52.229 -31.215 1.00 40.30 O
ATOM 4 OP2 C A1353 4.702 -50.923 -29.064 1.00 52.56 O
ATOM 5 O5' C A1353 4.810 -53.425 -29.121 1.00 43.65 O
ATOM 6 C5' C A1353 4.613 -54.580 -29.935 1.00 46.47 C
ATOM 7 C4' C A1353 3.830 -55.614 -29.175 1.00 48.27 C
ATOM 8 O4' C A1353 4.611 -56.128 -28.060 1.00 46.49 O
ATOM 9 C3' C A1353 2.563 -55.074 -28.544 1.00 51.48 C
ATOM 10 O3' C A1353 1.515 -55.068 -29.504 1.00 52.09 O
ATOM 11 C2' C A1353 2.346 -56.063 -27.409 1.00 56.70 C
ATOM 12 O2' C A1353 1.892 -57.306 -27.908 1.00 66.28 O
ATOM 13 C1' C A1353 3.778 -56.278 -26.924 1.00 49.29 C
ATOM 14 N1 C A1353 4.213 -55.286 -25.916 1.00 51.58 N
ATOM 15 C2 C A1353 3.851 -55.449 -24.563 1.00 53.48 C
ATOM 16 O2 C A1353 3.119 -56.398 -24.241 1.00 59.96 O
ATOM 17 N3 C A1353 4.317 -54.562 -23.647 1.00 46.74 N
ATOM 18 C4 C A1353 5.100 -53.545 -24.038 1.00 47.43 C
ATOM 19 N4 C A1353 5.578 -52.707 -23.109 1.00 48.46 N
ATOM 20 C5 C A1353 5.442 -53.344 -25.405 1.00 48.76 C
ATOM 21 C6 C A1353 4.982 -54.223 -26.297 1.00 47.91 C
ATOM 22 P C A1354 0.443 -53.871 -29.514 1.00 52.47 P
ATOM 23 OP1 C A1354 -0.580 -54.160 -30.561 1.00 51.20 O
ATOM 24 OP2 C A1354 1.194 -52.593 -29.554 1.00 54.96 O
ATOM 25 O5' C A1354 -0.264 -53.981 -28.098 1.00 54.71 O
TER
ATOM 1 O3' U B1351 7.513 -47.445 -24.436 1.00 56.38 O
ATOM 2 P U B1352 6.708 -48.809 -24.732 1.00 56.10 P
ATOM 3 OP1 U B1352 5.360 -48.429 -25.227 1.00 56.44 O
ATOM 4 OP2 U B1352 6.830 -49.727 -23.559 1.00 46.96 O
ATOM 5 O5' U B1352 7.505 -49.475 -25.938 1.00 52.14 O
ATOM 6 C5' U B1352 7.305 -49.027 -27.280 1.00 50.51 C
ATOM 7 C4' U B1352 7.769 -50.055 -28.265 1.00 47.81 C
ATOM 8 O4' U B1352 9.214 -50.101 -28.259 1.00 52.77 O
ATOM 9 C3' U B1352 7.276 -51.477 -28.048 1.00 44.35 C
ATOM 10 O3' U B1352 6.926 -52.007 -29.313 1.00 40.35 O
ATOM 11 C2' U B1352 8.493 -52.197 -27.477 1.00 48.70 C
ATOM 12 O2' U B1352 8.592 -53.560 -27.839 1.00 56.60 O
ATOM 13 C1' U B1352 9.645 -51.445 -28.133 1.00 56.28 C
ATOM 14 N1 U B1352 10.889 -51.510 -27.340 1.00 55.75 N
ATOM 15 C2 U B1352 11.947 -52.317 -27.801 1.00 55.28 C
ATOM 16 O2 U B1352 11.895 -52.976 -28.830 1.00 52.18 O
ATOM 17 N3 U B1352 13.062 -52.316 -27.004 1.00 58.87 N
ATOM 18 C4 U B1352 13.236 -51.615 -25.818 1.00 60.48 C
ATOM 19 O4 U B1352 14.315 -51.678 -25.216 1.00 61.23 O
ATOM 20 C5 U B1352 12.114 -50.827 -25.415 1.00 57.86 C
ATOM 21 C6 U B1352 11.013 -50.801 -26.165 1.00 56.21 C
ATOM 22 P C B1353 5.372 -52.070 -29.744 1.00 46.26 P
ATOM 23 OP1 C B1353 5.241 -52.229 -31.215 1.00 40.30 O
ATOM 24 OP2 C B1353 4.702 -50.923 -29.064 1.00 52.56 O
ATOM 25 O5' C B1353 4.810 -53.425 -29.121 1.00 43.65 O
TER
ATOM 2 P C A1353 5.372 -52.070 -29.744 1.00 46.26 P
ATOM 3 OP1 C A1353 5.241 -52.229 -31.215 1.00 40.30 O
ATOM 4 OP2 C A1353 4.702 -50.923 -29.064 1.00 52.56 O
ATOM 5 O5' C A1353 4.810 -53.425 -29.121 1.00 43.65 O
ATOM 6 C5' C A1353 4.613 -54.580 -29.935 1.00 46.47 C
ATOM 7 C4' C A1353 3.830 -55.614 -29.175 1.00 48.27 C
ATOM 8 O4' C A1353 4.611 -56.128 -28.060 1.00 46.49 O
ATOM 9 C3' C A1353 2.563 -55.074 -28.544 1.00 51.48 C
ATOM 10 O3' C A1353 1.515 -55.068 -29.504 1.00 52.09 O
ATOM 11 C2' C A1353 2.346 -56.063 -27.409 1.00 56.70 C
ATOM 12 O2' C A1353 1.892 -57.306 -27.908 1.00 66.28 O
ATOM 13 C1' C A1353 3.778 -56.278 -26.924 1.00 49.29 C
ATOM 14 N1 C A1353 4.213 -55.286 -25.916 1.00 51.58 N
ATOM 15 C2 C A1353 3.851 -55.449 -24.563 1.00 53.48 C
ATOM 16 O2 C A1353 3.119 -56.398 -24.241 1.00 59.96 O
ATOM 17 N3 C A1353 4.317 -54.562 -23.647 1.00 46.74 N
ATOM 18 C4 C A1353 5.100 -53.545 -24.038 1.00 47.43 C
ATOM 19 N4 C A1353 5.578 -52.707 -23.109 1.00 48.46 N
ATOM 20 C5 C A1353 5.442 -53.344 -25.405 1.00 48.76 C
ATOM 21 C6 C A1353 4.982 -54.223 -26.297 1.00 47.91 C
ATOM 22 P C A1354 0.443 -53.871 -29.514 1.00 52.47 P
ATOM 23 OP1 C A1354 -0.580 -54.160 -30.561 1.00 51.20 O
ATOM 24 OP2 C A1354 1.194 -52.593 -29.554 1.00 54.96 O
ATOM 25 O5' C A1354 -0.264 -53.981 -28.098 1.00 54.71 O
TER
ATOM 1 O3' U B1351 7.513 -47.445 -24.436 1.00 56.38 O
ATOM 2 P U B1352 6.708 -48.809 -24.732 1.00 56.10 P
ATOM 3 OP1 U B1352 5.360 -48.429 -25.227 1.00 56.44 O
ATOM 4 OP2 U B1352 6.830 -49.727 -23.559 1.00 46.96 O
ATOM 5 O5' U B1352 7.505 -49.475 -25.938 1.00 52.14 O
ATOM 6 C5' U B1352 7.305 -49.027 -27.280 1.00 50.51 C
ATOM 7 C4' U B1352 7.769 -50.055 -28.265 1.00 47.81 C
ATOM 8 O4' U B1352 9.214 -50.101 -28.259 1.00 52.77 O
ATOM 9 C3' U B1352 7.276 -51.477 -28.048 1.00 44.35 C
ATOM 10 O3' U B1352 6.926 -52.007 -29.313 1.00 40.35 O
ATOM 11 C2' U B1352 8.493 -52.197 -27.477 1.00 48.70 C
ATOM 12 O2' U B1352 8.592 -53.560 -27.839 1.00 56.60 O
ATOM 13 C1' U B1352 9.645 -51.445 -28.133 1.00 56.28 C
ATOM 14 N1 U B1352 10.889 -51.510 -27.340 1.00 55.75 N
ATOM 15 C2 U B1352 11.947 -52.317 -27.801 1.00 55.28 C
ATOM 16 O2 U B1352 11.895 -52.976 -28.830 1.00 52.18 O
ATOM 17 N3 U B1352 13.062 -52.316 -27.004 1.00 58.87 N
ATOM 18 C4 U B1352 13.236 -51.615 -25.818 1.00 60.48 C
ATOM 19 O4 U B1352 14.315 -51.678 -25.216 1.00 61.23 O
ATOM 20 C5 U B1352 12.114 -50.827 -25.415 1.00 57.86 C
ATOM 21 C6 U B1352 11.013 -50.801 -26.165 1.00 56.21 C
ATOM 22 P C B1353 5.372 -52.070 -29.744 1.00 46.26 P
ATOM 23 OP1 C B1353 5.241 -52.229 -31.215 1.00 40.30 O
ATOM 24 OP2 C B1353 4.702 -50.923 -29.064 1.00 52.56 O
ATOM 25 O5' C B1353 4.810 -53.425 -29.121 1.00 43.65 O
TER
Atoms:
C2: (3.851,-55.449,-24.563)
OP1: (5.241,-52.229,-31.215)
OP2: (4.702,-50.923,-29.064)
C4: (5.100,-53.545,-24.038)
O5': (4.810,-53.425,-29.121)
C3': (2.563,-55.074,-28.544)
C1': (3.778,-56.278,-26.924)
O4': (4.611,-56.128,-28.060)
C5': (4.613,-54.580,-29.935)
P: (5.372,-52.070,-29.744)
O2: (3.119,-56.398,-24.241)
C4': (3.830,-55.614,-29.175)
C2': (2.346,-56.063,-27.409)
O2': (1.892,-57.306,-27.908)
N1: (4.213,-55.286,-25.916)
N3: (4.317,-54.562,-23.647)
N4: (5.578,-52.707,-23.109)
C6: (4.982,-54.223,-26.297)
C5: (5.442,-53.344,-25.405)
O3': (1.515,-55.068,-29.504)
OP1: (5.241,-52.229,-31.215)
OP2: (4.702,-50.923,-29.064)
C4: (5.100,-53.545,-24.038)
O5': (4.810,-53.425,-29.121)
C3': (2.563,-55.074,-28.544)
C1': (3.778,-56.278,-26.924)
O4': (4.611,-56.128,-28.060)
C5': (4.613,-54.580,-29.935)
P: (5.372,-52.070,-29.744)
O2: (3.119,-56.398,-24.241)
C4': (3.830,-55.614,-29.175)
C2': (2.346,-56.063,-27.409)
O2': (1.892,-57.306,-27.908)
N1: (4.213,-55.286,-25.916)
N3: (4.317,-54.562,-23.647)
N4: (5.578,-52.707,-23.109)
C6: (4.982,-54.223,-26.297)
C5: (5.442,-53.344,-25.405)
O3': (1.515,-55.068,-29.504)
C4: (13.236,-51.615,-25.818)
N3: (13.062,-52.316,-27.004)
OP1: (5.360,-48.429,-25.227)
OP2: (6.830,-49.727,-23.559)
C2: (11.947,-52.317,-27.801)
C1': (9.645,-51.445,-28.133)
C3': (7.276,-51.477,-28.048)
O5': (7.505,-49.475,-25.938)
O4': (9.214,-50.101,-28.259)
C5': (7.305,-49.027,-27.280)
P: (6.708,-48.809,-24.732)
C4': (7.769,-50.055,-28.265)
C2': (8.493,-52.197,-27.477)
O2': (8.592,-53.560,-27.839)
N1: (10.889,-51.510,-27.340)
O4: (14.315,-51.678,-25.216)
O2: (11.895,-52.976,-28.830)
C6: (11.013,-50.801,-26.165)
C5: (12.114,-50.827,-25.415)
O3': (6.926,-52.007,-29.313)
N3: (13.062,-52.316,-27.004)
OP1: (5.360,-48.429,-25.227)
OP2: (6.830,-49.727,-23.559)
C2: (11.947,-52.317,-27.801)
C1': (9.645,-51.445,-28.133)
C3': (7.276,-51.477,-28.048)
O5': (7.505,-49.475,-25.938)
O4': (9.214,-50.101,-28.259)
C5': (7.305,-49.027,-27.280)
P: (6.708,-48.809,-24.732)
C4': (7.769,-50.055,-28.265)
C2': (8.493,-52.197,-27.477)
O2': (8.592,-53.560,-27.839)
N1: (10.889,-51.510,-27.340)
O4: (14.315,-51.678,-25.216)
O2: (11.895,-52.976,-28.830)
C6: (11.013,-50.801,-26.165)
C5: (12.114,-50.827,-25.415)
O3': (6.926,-52.007,-29.313)
Image (generated by PyMOL):