Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12478:12476
Extra
PDB:
ATOM 1 O3' U A2477 38.460 -42.281 54.331 1.00 39.82 O
ATOM 2 P C A2478 39.826 -41.569 53.942 1.00 41.14 P
ATOM 3 OP1 C A2478 39.627 -40.122 54.136 1.00 40.83 O
ATOM 4 OP2 C A2478 40.214 -42.055 52.607 1.00 41.36 O
ATOM 5 O5' C A2478 40.825 -42.108 55.010 1.00 41.16 O
ATOM 6 C5' C A2478 40.697 -41.795 56.375 1.00 40.99 C
ATOM 7 C4' C A2478 41.798 -42.445 57.164 1.00 41.07 C
ATOM 8 O4' C A2478 41.566 -43.877 57.256 1.00 41.38 O
ATOM 9 C3' C A2478 43.185 -42.334 56.558 1.00 41.09 C
ATOM 10 O3' C A2478 43.783 -41.042 56.802 1.00 40.81 O
ATOM 11 C2' C A2478 43.906 -43.505 57.217 1.00 41.31 C
ATOM 12 O2' C A2478 44.215 -43.170 58.548 1.00 41.17 O
ATOM 13 C1' C A2478 42.796 -44.558 57.277 1.00 41.54 C
ATOM 14 N1 C A2478 42.822 -45.588 56.170 1.00 41.85 N
ATOM 15 C2 C A2478 42.116 -45.371 54.968 1.00 41.89 C
ATOM 16 O2 C A2478 41.572 -44.304 54.781 1.00 41.65 O
ATOM 17 N3 C A2478 41.968 -46.233 53.947 1.00 42.17 N
ATOM 18 C4 C A2478 42.549 -47.378 54.076 1.00 42.44 C
ATOM 19 N4 C A2478 42.375 -48.149 52.973 1.00 42.73 N
ATOM 20 C5 C A2478 43.275 -47.718 55.301 1.00 42.43 C
ATOM 21 C6 C A2478 43.361 -46.831 56.313 1.00 42.14 C
ATOM 22 P A A2479 45.219 -40.667 56.182 1.00 37.89 P
ATOM 23 OP1 A A2479 45.311 -39.189 56.068 1.00 37.60 O
ATOM 24 OP2 A A2479 45.364 -41.488 54.969 1.00 38.14 O
ATOM 25 O5' A A2479 46.216 -41.171 57.324 1.00 37.94 O
TER
ATOM 1 O3' U B2475 41.598 -52.356 50.047 1.00 42.25 O
ATOM 2 P U B2476 41.881 -50.849 50.453 1.00 41.29 P
ATOM 3 OP1 U B2476 42.382 -50.181 49.232 1.00 41.25 O
ATOM 4 OP2 U B2476 42.737 -50.845 51.664 1.00 41.16 O
ATOM 5 O5' U B2476 40.430 -50.315 50.818 1.00 41.11 O
ATOM 6 C5' U B2476 39.500 -50.019 49.792 1.00 41.16 C
ATOM 7 C4' U B2476 38.188 -49.611 50.346 1.00 41.00 C
ATOM 8 O4' U B2476 37.693 -50.636 51.216 1.00 41.19 O
ATOM 9 C3' U B2476 38.211 -48.374 51.187 1.00 40.60 C
ATOM 10 O3' U B2476 38.158 -47.217 50.382 1.00 40.40 O
ATOM 11 C2' U B2476 36.996 -48.558 52.116 1.00 40.57 C
ATOM 12 O2' U B2476 35.761 -48.156 51.480 1.00 40.56 O
ATOM 13 C1' U B2476 36.983 -50.072 52.284 1.00 40.94 C
ATOM 14 N1 U B2476 37.618 -50.539 53.501 1.00 40.93 N
ATOM 15 C2 U B2476 36.851 -50.705 54.622 1.00 40.89 C
ATOM 16 O2 U B2476 35.715 -50.357 54.685 1.00 40.82 O
ATOM 17 N3 U B2476 37.501 -51.262 55.706 1.00 40.94 N
ATOM 18 C4 U B2476 38.807 -51.723 55.754 1.00 41.04 C
ATOM 19 O4 U B2476 39.205 -52.202 56.810 1.00 41.09 O
ATOM 20 C5 U B2476 39.530 -51.559 54.528 1.00 41.09 C
ATOM 21 C6 U B2476 38.924 -51.009 53.464 1.00 41.04 C
ATOM 22 P U B2477 39.220 -46.040 50.555 1.00 41.03 P
ATOM 23 OP1 U B2477 38.957 -45.091 49.493 1.00 40.93 O
ATOM 24 OP2 U B2477 40.552 -46.654 50.640 1.00 41.15 O
ATOM 25 O5' U B2477 38.812 -45.412 51.939 1.00 40.74 O
TER
ATOM 2 P C A2478 39.826 -41.569 53.942 1.00 41.14 P
ATOM 3 OP1 C A2478 39.627 -40.122 54.136 1.00 40.83 O
ATOM 4 OP2 C A2478 40.214 -42.055 52.607 1.00 41.36 O
ATOM 5 O5' C A2478 40.825 -42.108 55.010 1.00 41.16 O
ATOM 6 C5' C A2478 40.697 -41.795 56.375 1.00 40.99 C
ATOM 7 C4' C A2478 41.798 -42.445 57.164 1.00 41.07 C
ATOM 8 O4' C A2478 41.566 -43.877 57.256 1.00 41.38 O
ATOM 9 C3' C A2478 43.185 -42.334 56.558 1.00 41.09 C
ATOM 10 O3' C A2478 43.783 -41.042 56.802 1.00 40.81 O
ATOM 11 C2' C A2478 43.906 -43.505 57.217 1.00 41.31 C
ATOM 12 O2' C A2478 44.215 -43.170 58.548 1.00 41.17 O
ATOM 13 C1' C A2478 42.796 -44.558 57.277 1.00 41.54 C
ATOM 14 N1 C A2478 42.822 -45.588 56.170 1.00 41.85 N
ATOM 15 C2 C A2478 42.116 -45.371 54.968 1.00 41.89 C
ATOM 16 O2 C A2478 41.572 -44.304 54.781 1.00 41.65 O
ATOM 17 N3 C A2478 41.968 -46.233 53.947 1.00 42.17 N
ATOM 18 C4 C A2478 42.549 -47.378 54.076 1.00 42.44 C
ATOM 19 N4 C A2478 42.375 -48.149 52.973 1.00 42.73 N
ATOM 20 C5 C A2478 43.275 -47.718 55.301 1.00 42.43 C
ATOM 21 C6 C A2478 43.361 -46.831 56.313 1.00 42.14 C
ATOM 22 P A A2479 45.219 -40.667 56.182 1.00 37.89 P
ATOM 23 OP1 A A2479 45.311 -39.189 56.068 1.00 37.60 O
ATOM 24 OP2 A A2479 45.364 -41.488 54.969 1.00 38.14 O
ATOM 25 O5' A A2479 46.216 -41.171 57.324 1.00 37.94 O
TER
ATOM 1 O3' U B2475 41.598 -52.356 50.047 1.00 42.25 O
ATOM 2 P U B2476 41.881 -50.849 50.453 1.00 41.29 P
ATOM 3 OP1 U B2476 42.382 -50.181 49.232 1.00 41.25 O
ATOM 4 OP2 U B2476 42.737 -50.845 51.664 1.00 41.16 O
ATOM 5 O5' U B2476 40.430 -50.315 50.818 1.00 41.11 O
ATOM 6 C5' U B2476 39.500 -50.019 49.792 1.00 41.16 C
ATOM 7 C4' U B2476 38.188 -49.611 50.346 1.00 41.00 C
ATOM 8 O4' U B2476 37.693 -50.636 51.216 1.00 41.19 O
ATOM 9 C3' U B2476 38.211 -48.374 51.187 1.00 40.60 C
ATOM 10 O3' U B2476 38.158 -47.217 50.382 1.00 40.40 O
ATOM 11 C2' U B2476 36.996 -48.558 52.116 1.00 40.57 C
ATOM 12 O2' U B2476 35.761 -48.156 51.480 1.00 40.56 O
ATOM 13 C1' U B2476 36.983 -50.072 52.284 1.00 40.94 C
ATOM 14 N1 U B2476 37.618 -50.539 53.501 1.00 40.93 N
ATOM 15 C2 U B2476 36.851 -50.705 54.622 1.00 40.89 C
ATOM 16 O2 U B2476 35.715 -50.357 54.685 1.00 40.82 O
ATOM 17 N3 U B2476 37.501 -51.262 55.706 1.00 40.94 N
ATOM 18 C4 U B2476 38.807 -51.723 55.754 1.00 41.04 C
ATOM 19 O4 U B2476 39.205 -52.202 56.810 1.00 41.09 O
ATOM 20 C5 U B2476 39.530 -51.559 54.528 1.00 41.09 C
ATOM 21 C6 U B2476 38.924 -51.009 53.464 1.00 41.04 C
ATOM 22 P U B2477 39.220 -46.040 50.555 1.00 41.03 P
ATOM 23 OP1 U B2477 38.957 -45.091 49.493 1.00 40.93 O
ATOM 24 OP2 U B2477 40.552 -46.654 50.640 1.00 41.15 O
ATOM 25 O5' U B2477 38.812 -45.412 51.939 1.00 40.74 O
TER
Atoms:
C2: (42.116,-45.371,54.968)
OP1: (39.627,-40.122,54.136)
OP2: (40.214,-42.055,52.607)
C4: (42.549,-47.378,54.076)
O5': (40.825,-42.108,55.010)
C3': (43.185,-42.334,56.558)
C1': (42.796,-44.558,57.277)
O4': (41.566,-43.877,57.256)
C5': (40.697,-41.795,56.375)
P: (39.826,-41.569,53.942)
O2: (41.572,-44.304,54.781)
C4': (41.798,-42.445,57.164)
C2': (43.906,-43.505,57.217)
O2': (44.215,-43.170,58.548)
N1: (42.822,-45.588,56.170)
N3: (41.968,-46.233,53.947)
N4: (42.375,-48.149,52.973)
C6: (43.361,-46.831,56.313)
C5: (43.275,-47.718,55.301)
O3': (43.783,-41.042,56.802)
OP1: (39.627,-40.122,54.136)
OP2: (40.214,-42.055,52.607)
C4: (42.549,-47.378,54.076)
O5': (40.825,-42.108,55.010)
C3': (43.185,-42.334,56.558)
C1': (42.796,-44.558,57.277)
O4': (41.566,-43.877,57.256)
C5': (40.697,-41.795,56.375)
P: (39.826,-41.569,53.942)
O2: (41.572,-44.304,54.781)
C4': (41.798,-42.445,57.164)
C2': (43.906,-43.505,57.217)
O2': (44.215,-43.170,58.548)
N1: (42.822,-45.588,56.170)
N3: (41.968,-46.233,53.947)
N4: (42.375,-48.149,52.973)
C6: (43.361,-46.831,56.313)
C5: (43.275,-47.718,55.301)
O3': (43.783,-41.042,56.802)
C4: (38.807,-51.723,55.754)
N3: (37.501,-51.262,55.706)
OP1: (42.382,-50.181,49.232)
OP2: (42.737,-50.845,51.664)
C2: (36.851,-50.705,54.622)
C1': (36.983,-50.072,52.284)
C3': (38.211,-48.374,51.187)
O5': (40.430,-50.315,50.818)
O4': (37.693,-50.636,51.216)
C5': (39.500,-50.019,49.792)
P: (41.881,-50.849,50.453)
C4': (38.188,-49.611,50.346)
C2': (36.996,-48.558,52.116)
O2': (35.761,-48.156,51.480)
N1: (37.618,-50.539,53.501)
O4: (39.205,-52.202,56.810)
O2: (35.715,-50.357,54.685)
C6: (38.924,-51.009,53.464)
C5: (39.530,-51.559,54.528)
O3': (38.158,-47.217,50.382)
N3: (37.501,-51.262,55.706)
OP1: (42.382,-50.181,49.232)
OP2: (42.737,-50.845,51.664)
C2: (36.851,-50.705,54.622)
C1': (36.983,-50.072,52.284)
C3': (38.211,-48.374,51.187)
O5': (40.430,-50.315,50.818)
O4': (37.693,-50.636,51.216)
C5': (39.500,-50.019,49.792)
P: (41.881,-50.849,50.453)
C4': (38.188,-49.611,50.346)
C2': (36.996,-48.558,52.116)
O2': (35.761,-48.156,51.480)
N1: (37.618,-50.539,53.501)
O4: (39.205,-52.202,56.810)
O2: (35.715,-50.357,54.685)
C6: (38.924,-51.009,53.464)
C5: (39.530,-51.559,54.528)
O3': (38.158,-47.217,50.382)
Image (generated by PyMOL):