Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12512:12404
Extra
PDB:
ATOM 1 O3' U A2511 22.768 -51.057 62.096 1.00 46.59 O
ATOM 2 P C A2512 23.297 -52.364 62.841 1.00 47.79 P
ATOM 3 OP1 C A2512 23.685 -53.330 61.811 1.00 48.07 O
ATOM 4 OP2 C A2512 22.276 -52.759 63.831 1.00 47.93 O
ATOM 5 O5' C A2512 24.583 -51.843 63.591 1.00 47.53 O
ATOM 6 C5' C A2512 25.744 -51.483 62.882 1.00 47.38 C
ATOM 7 C4' C A2512 26.371 -50.270 63.493 1.00 47.01 C
ATOM 8 O4' C A2512 25.565 -49.095 63.184 1.00 46.77 O
ATOM 9 C3' C A2512 26.449 -50.282 65.005 1.00 46.95 C
ATOM 10 O3' C A2512 27.560 -51.012 65.476 1.00 47.07 O
ATOM 11 C2' C A2512 26.508 -48.808 65.339 1.00 46.57 C
ATOM 12 O2' C A2512 27.820 -48.308 65.131 1.00 46.38 O
ATOM 13 C1' C A2512 25.581 -48.208 64.267 1.00 46.51 C
ATOM 14 N1 C A2512 24.212 -48.049 64.744 1.00 46.55 N
ATOM 15 C2 C A2512 23.926 -47.065 65.632 1.00 46.31 C
ATOM 16 O2 C A2512 24.843 -46.348 65.969 1.00 46.08 O
ATOM 17 N3 C A2512 22.678 -46.901 66.117 1.00 46.36 N
ATOM 18 C4 C A2512 21.685 -47.694 65.722 1.00 46.63 C
ATOM 19 N4 C A2512 20.476 -47.474 66.209 1.00 46.67 N
ATOM 20 C5 C A2512 21.942 -48.723 64.785 1.00 46.89 C
ATOM 21 C6 C A2512 23.212 -48.860 64.339 1.00 46.84 C
ATOM 22 P G A2513 27.600 -51.577 66.972 1.00 44.23 P
ATOM 23 OP1 G A2513 28.462 -52.767 66.959 1.00 44.50 O
ATOM 24 OP2 G A2513 26.214 -51.714 67.445 1.00 44.33 O
ATOM 25 O5' G A2513 28.320 -50.406 67.753 1.00 43.88 O
TER
ATOM 1 O3' G B2403 17.197 -47.992 65.348 1.00 45.52 O
ATOM 2 P U B2404 17.118 -49.568 65.658 1.00 52.19 P
ATOM 3 OP1 U B2404 17.309 -49.694 67.115 1.00 52.16 O
ATOM 4 OP2 U B2404 18.074 -50.277 64.748 1.00 52.30 O
ATOM 5 O5' U B2404 15.632 -49.934 65.266 1.00 52.45 O
ATOM 6 C5' U B2404 15.364 -51.074 64.492 1.00 52.80 C
ATOM 7 C4' U B2404 14.423 -50.754 63.370 1.00 52.87 C
ATOM 8 O4' U B2404 15.176 -50.343 62.202 1.00 52.74 O
ATOM 9 C3' U B2404 13.559 -51.909 62.880 1.00 53.30 C
ATOM 10 O3' U B2404 12.402 -52.088 63.669 1.00 53.44 O
ATOM 11 C2' U B2404 13.264 -51.524 61.434 1.00 53.31 C
ATOM 12 O2' U B2404 12.233 -50.565 61.373 1.00 53.20 O
ATOM 13 C1' U B2404 14.551 -50.826 61.028 1.00 53.01 C
ATOM 14 N1 U B2404 15.481 -51.733 60.330 1.00 53.18 N
ATOM 15 C2 U B2404 15.141 -52.106 59.059 1.00 53.41 C
ATOM 16 O2 U B2404 14.094 -51.719 58.539 1.00 53.47 O
ATOM 17 N3 U B2404 16.055 -52.908 58.429 1.00 53.57 N
ATOM 18 C4 U B2404 17.214 -53.377 58.950 1.00 53.53 C
ATOM 19 O4 U B2404 17.918 -54.122 58.296 1.00 53.71 O
ATOM 20 C5 U B2404 17.493 -52.928 60.250 1.00 53.29 C
ATOM 21 C6 U B2404 16.648 -52.134 60.878 1.00 53.12 C
ATOM 22 P C B2405 11.865 -53.555 63.953 1.00 46.29 P
ATOM 23 OP1 C B2405 10.502 -53.445 64.544 1.00 46.41 O
ATOM 24 OP2 C B2405 12.920 -54.256 64.722 1.00 46.32 O
ATOM 25 O5' C B2405 11.769 -54.171 62.510 1.00 46.55 O
TER
ATOM 2 P C A2512 23.297 -52.364 62.841 1.00 47.79 P
ATOM 3 OP1 C A2512 23.685 -53.330 61.811 1.00 48.07 O
ATOM 4 OP2 C A2512 22.276 -52.759 63.831 1.00 47.93 O
ATOM 5 O5' C A2512 24.583 -51.843 63.591 1.00 47.53 O
ATOM 6 C5' C A2512 25.744 -51.483 62.882 1.00 47.38 C
ATOM 7 C4' C A2512 26.371 -50.270 63.493 1.00 47.01 C
ATOM 8 O4' C A2512 25.565 -49.095 63.184 1.00 46.77 O
ATOM 9 C3' C A2512 26.449 -50.282 65.005 1.00 46.95 C
ATOM 10 O3' C A2512 27.560 -51.012 65.476 1.00 47.07 O
ATOM 11 C2' C A2512 26.508 -48.808 65.339 1.00 46.57 C
ATOM 12 O2' C A2512 27.820 -48.308 65.131 1.00 46.38 O
ATOM 13 C1' C A2512 25.581 -48.208 64.267 1.00 46.51 C
ATOM 14 N1 C A2512 24.212 -48.049 64.744 1.00 46.55 N
ATOM 15 C2 C A2512 23.926 -47.065 65.632 1.00 46.31 C
ATOM 16 O2 C A2512 24.843 -46.348 65.969 1.00 46.08 O
ATOM 17 N3 C A2512 22.678 -46.901 66.117 1.00 46.36 N
ATOM 18 C4 C A2512 21.685 -47.694 65.722 1.00 46.63 C
ATOM 19 N4 C A2512 20.476 -47.474 66.209 1.00 46.67 N
ATOM 20 C5 C A2512 21.942 -48.723 64.785 1.00 46.89 C
ATOM 21 C6 C A2512 23.212 -48.860 64.339 1.00 46.84 C
ATOM 22 P G A2513 27.600 -51.577 66.972 1.00 44.23 P
ATOM 23 OP1 G A2513 28.462 -52.767 66.959 1.00 44.50 O
ATOM 24 OP2 G A2513 26.214 -51.714 67.445 1.00 44.33 O
ATOM 25 O5' G A2513 28.320 -50.406 67.753 1.00 43.88 O
TER
ATOM 1 O3' G B2403 17.197 -47.992 65.348 1.00 45.52 O
ATOM 2 P U B2404 17.118 -49.568 65.658 1.00 52.19 P
ATOM 3 OP1 U B2404 17.309 -49.694 67.115 1.00 52.16 O
ATOM 4 OP2 U B2404 18.074 -50.277 64.748 1.00 52.30 O
ATOM 5 O5' U B2404 15.632 -49.934 65.266 1.00 52.45 O
ATOM 6 C5' U B2404 15.364 -51.074 64.492 1.00 52.80 C
ATOM 7 C4' U B2404 14.423 -50.754 63.370 1.00 52.87 C
ATOM 8 O4' U B2404 15.176 -50.343 62.202 1.00 52.74 O
ATOM 9 C3' U B2404 13.559 -51.909 62.880 1.00 53.30 C
ATOM 10 O3' U B2404 12.402 -52.088 63.669 1.00 53.44 O
ATOM 11 C2' U B2404 13.264 -51.524 61.434 1.00 53.31 C
ATOM 12 O2' U B2404 12.233 -50.565 61.373 1.00 53.20 O
ATOM 13 C1' U B2404 14.551 -50.826 61.028 1.00 53.01 C
ATOM 14 N1 U B2404 15.481 -51.733 60.330 1.00 53.18 N
ATOM 15 C2 U B2404 15.141 -52.106 59.059 1.00 53.41 C
ATOM 16 O2 U B2404 14.094 -51.719 58.539 1.00 53.47 O
ATOM 17 N3 U B2404 16.055 -52.908 58.429 1.00 53.57 N
ATOM 18 C4 U B2404 17.214 -53.377 58.950 1.00 53.53 C
ATOM 19 O4 U B2404 17.918 -54.122 58.296 1.00 53.71 O
ATOM 20 C5 U B2404 17.493 -52.928 60.250 1.00 53.29 C
ATOM 21 C6 U B2404 16.648 -52.134 60.878 1.00 53.12 C
ATOM 22 P C B2405 11.865 -53.555 63.953 1.00 46.29 P
ATOM 23 OP1 C B2405 10.502 -53.445 64.544 1.00 46.41 O
ATOM 24 OP2 C B2405 12.920 -54.256 64.722 1.00 46.32 O
ATOM 25 O5' C B2405 11.769 -54.171 62.510 1.00 46.55 O
TER
Atoms:
C2: (23.926,-47.065,65.632)
OP1: (23.685,-53.330,61.811)
OP2: (22.276,-52.759,63.831)
C4: (21.685,-47.694,65.722)
O5': (24.583,-51.843,63.591)
C3': (26.449,-50.282,65.005)
C1': (25.581,-48.208,64.267)
O4': (25.565,-49.095,63.184)
C5': (25.744,-51.483,62.882)
P: (23.297,-52.364,62.841)
O2: (24.843,-46.348,65.969)
C4': (26.371,-50.270,63.493)
C2': (26.508,-48.808,65.339)
O2': (27.820,-48.308,65.131)
N1: (24.212,-48.049,64.744)
N3: (22.678,-46.901,66.117)
N4: (20.476,-47.474,66.209)
C6: (23.212,-48.860,64.339)
C5: (21.942,-48.723,64.785)
O3': (27.560,-51.012,65.476)
OP1: (23.685,-53.330,61.811)
OP2: (22.276,-52.759,63.831)
C4: (21.685,-47.694,65.722)
O5': (24.583,-51.843,63.591)
C3': (26.449,-50.282,65.005)
C1': (25.581,-48.208,64.267)
O4': (25.565,-49.095,63.184)
C5': (25.744,-51.483,62.882)
P: (23.297,-52.364,62.841)
O2: (24.843,-46.348,65.969)
C4': (26.371,-50.270,63.493)
C2': (26.508,-48.808,65.339)
O2': (27.820,-48.308,65.131)
N1: (24.212,-48.049,64.744)
N3: (22.678,-46.901,66.117)
N4: (20.476,-47.474,66.209)
C6: (23.212,-48.860,64.339)
C5: (21.942,-48.723,64.785)
O3': (27.560,-51.012,65.476)
C4: (17.214,-53.377,58.950)
N3: (16.055,-52.908,58.429)
OP1: (17.309,-49.694,67.115)
OP2: (18.074,-50.277,64.748)
C2: (15.141,-52.106,59.059)
C1': (14.551,-50.826,61.028)
C3': (13.559,-51.909,62.880)
O5': (15.632,-49.934,65.266)
O4': (15.176,-50.343,62.202)
C5': (15.364,-51.074,64.492)
P: (17.118,-49.568,65.658)
C4': (14.423,-50.754,63.370)
C2': (13.264,-51.524,61.434)
O2': (12.233,-50.565,61.373)
N1: (15.481,-51.733,60.330)
O4: (17.918,-54.122,58.296)
O2: (14.094,-51.719,58.539)
C6: (16.648,-52.134,60.878)
C5: (17.493,-52.928,60.250)
O3': (12.402,-52.088,63.669)
N3: (16.055,-52.908,58.429)
OP1: (17.309,-49.694,67.115)
OP2: (18.074,-50.277,64.748)
C2: (15.141,-52.106,59.059)
C1': (14.551,-50.826,61.028)
C3': (13.559,-51.909,62.880)
O5': (15.632,-49.934,65.266)
O4': (15.176,-50.343,62.202)
C5': (15.364,-51.074,64.492)
P: (17.118,-49.568,65.658)
C4': (14.423,-50.754,63.370)
C2': (13.264,-51.524,61.434)
O2': (12.233,-50.565,61.373)
N1: (15.481,-51.733,60.330)
O4: (17.918,-54.122,58.296)
O2: (14.094,-51.719,58.539)
C6: (16.648,-52.134,60.878)
C5: (17.493,-52.928,60.250)
O3': (12.402,-52.088,63.669)
Image (generated by PyMOL):