Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12596:12595
Extra
PDB:
ATOM 1 O3' U A2595 -10.112 1.715 5.985 1.00100.30 O
ATOM 2 P C A2596 -9.095 0.547 6.412 1.00 74.18 P
ATOM 3 OP1 C A2596 -8.963 -0.356 5.239 1.00 74.58 O
ATOM 4 OP2 C A2596 -9.603 -0.020 7.701 1.00 73.78 O
ATOM 5 O5' C A2596 -7.706 1.327 6.668 1.00 73.74 O
ATOM 6 C5' C A2596 -6.799 1.642 5.604 1.00 73.94 C
ATOM 7 C4' C A2596 -5.876 2.785 5.985 1.00 73.61 C
ATOM 8 O4' C A2596 -6.651 3.856 6.576 1.00 73.66 O
ATOM 9 C3' C A2596 -4.819 2.480 7.035 1.00 72.88 C
ATOM 10 O3' C A2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 11 C2' C A2596 -4.553 3.850 7.660 1.00 72.66 C
ATOM 12 O2' C A2596 -3.650 4.589 6.862 1.00 72.80 O
ATOM 13 C1' C A2596 -5.901 4.527 7.553 1.00 73.11 C
ATOM 14 N1 C A2596 -6.643 4.529 8.823 1.00 72.81 N
ATOM 15 C2 C A2596 -6.424 5.617 9.656 1.00 72.53 C
ATOM 16 O2 C A2596 -5.616 6.485 9.331 1.00 72.51 O
ATOM 17 N3 C A2596 -7.079 5.719 10.811 1.00 72.27 N
ATOM 18 C4 C A2596 -7.938 4.783 11.148 1.00 72.30 C
ATOM 19 N4 C A2596 -8.539 4.961 12.319 1.00 72.04 N
ATOM 20 C5 C A2596 -8.207 3.653 10.322 1.00 72.60 C
ATOM 21 C6 C A2596 -7.540 3.565 9.169 1.00 72.85 C
ATOM 22 P A A2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 23 OP1 A A2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 24 OP2 A A2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 25 O5' A A2597 -2.357 -0.032 7.472 1.00 66.15 O
TER
ATOM 1 O3' U B2594 -13.297 3.030 12.105 1.00 91.86 O
ATOM 2 P U B2595 -12.227 2.142 11.315 1.00 98.84 P
ATOM 3 OP1 U B2595 -12.631 0.724 11.495 1.00 98.80 O
ATOM 4 OP2 U B2595 -10.881 2.564 11.785 1.00 98.30 O
ATOM 5 O5' U B2595 -12.446 2.586 9.796 1.00 99.52 O
ATOM 6 C5' U B2595 -11.843 1.863 8.736 1.00 99.70 C
ATOM 7 C4' U B2595 -11.751 2.697 7.496 1.00100.23 C
ATOM 8 O4' U B2595 -12.094 4.057 7.810 1.00100.31 O
ATOM 9 C3' U B2595 -10.375 2.791 6.857 1.00100.09 C
ATOM 10 O3' U B2595 -10.112 1.715 5.985 1.00100.30 O
ATOM 11 C2' U B2595 -10.393 4.133 6.136 1.00100.49 C
ATOM 12 O2' U B2595 -10.832 3.972 4.800 1.00101.16 O
ATOM 13 C1' U B2595 -11.452 4.925 6.906 1.00100.55 C
ATOM 14 N1 U B2595 -10.882 6.068 7.646 1.00100.19 N
ATOM 15 C2 U B2595 -10.696 7.243 6.935 1.00100.53 C
ATOM 16 O2 U B2595 -10.964 7.355 5.745 1.00101.11 O
ATOM 17 N3 U B2595 -10.177 8.280 7.681 1.00100.19 N
ATOM 18 C4 U B2595 -9.837 8.262 9.024 1.00 99.56 C
ATOM 19 O4 U B2595 -9.387 9.273 9.554 1.00 99.33 O
ATOM 20 C5 U B2595 -10.067 7.018 9.683 1.00 99.24 C
ATOM 21 C6 U B2595 -10.571 5.990 8.984 1.00 99.56 C
ATOM 22 P C B2596 -9.095 0.547 6.412 1.00 74.18 P
ATOM 23 OP1 C B2596 -8.963 -0.356 5.239 1.00 74.58 O
ATOM 24 OP2 C B2596 -9.603 -0.020 7.701 1.00 73.78 O
ATOM 25 O5' C B2596 -7.706 1.327 6.668 1.00 73.74 O
TER
ATOM 2 P C A2596 -9.095 0.547 6.412 1.00 74.18 P
ATOM 3 OP1 C A2596 -8.963 -0.356 5.239 1.00 74.58 O
ATOM 4 OP2 C A2596 -9.603 -0.020 7.701 1.00 73.78 O
ATOM 5 O5' C A2596 -7.706 1.327 6.668 1.00 73.74 O
ATOM 6 C5' C A2596 -6.799 1.642 5.604 1.00 73.94 C
ATOM 7 C4' C A2596 -5.876 2.785 5.985 1.00 73.61 C
ATOM 8 O4' C A2596 -6.651 3.856 6.576 1.00 73.66 O
ATOM 9 C3' C A2596 -4.819 2.480 7.035 1.00 72.88 C
ATOM 10 O3' C A2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 11 C2' C A2596 -4.553 3.850 7.660 1.00 72.66 C
ATOM 12 O2' C A2596 -3.650 4.589 6.862 1.00 72.80 O
ATOM 13 C1' C A2596 -5.901 4.527 7.553 1.00 73.11 C
ATOM 14 N1 C A2596 -6.643 4.529 8.823 1.00 72.81 N
ATOM 15 C2 C A2596 -6.424 5.617 9.656 1.00 72.53 C
ATOM 16 O2 C A2596 -5.616 6.485 9.331 1.00 72.51 O
ATOM 17 N3 C A2596 -7.079 5.719 10.811 1.00 72.27 N
ATOM 18 C4 C A2596 -7.938 4.783 11.148 1.00 72.30 C
ATOM 19 N4 C A2596 -8.539 4.961 12.319 1.00 72.04 N
ATOM 20 C5 C A2596 -8.207 3.653 10.322 1.00 72.60 C
ATOM 21 C6 C A2596 -7.540 3.565 9.169 1.00 72.85 C
ATOM 22 P A A2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 23 OP1 A A2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 24 OP2 A A2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 25 O5' A A2597 -2.357 -0.032 7.472 1.00 66.15 O
TER
ATOM 1 O3' U B2594 -13.297 3.030 12.105 1.00 91.86 O
ATOM 2 P U B2595 -12.227 2.142 11.315 1.00 98.84 P
ATOM 3 OP1 U B2595 -12.631 0.724 11.495 1.00 98.80 O
ATOM 4 OP2 U B2595 -10.881 2.564 11.785 1.00 98.30 O
ATOM 5 O5' U B2595 -12.446 2.586 9.796 1.00 99.52 O
ATOM 6 C5' U B2595 -11.843 1.863 8.736 1.00 99.70 C
ATOM 7 C4' U B2595 -11.751 2.697 7.496 1.00100.23 C
ATOM 8 O4' U B2595 -12.094 4.057 7.810 1.00100.31 O
ATOM 9 C3' U B2595 -10.375 2.791 6.857 1.00100.09 C
ATOM 10 O3' U B2595 -10.112 1.715 5.985 1.00100.30 O
ATOM 11 C2' U B2595 -10.393 4.133 6.136 1.00100.49 C
ATOM 12 O2' U B2595 -10.832 3.972 4.800 1.00101.16 O
ATOM 13 C1' U B2595 -11.452 4.925 6.906 1.00100.55 C
ATOM 14 N1 U B2595 -10.882 6.068 7.646 1.00100.19 N
ATOM 15 C2 U B2595 -10.696 7.243 6.935 1.00100.53 C
ATOM 16 O2 U B2595 -10.964 7.355 5.745 1.00101.11 O
ATOM 17 N3 U B2595 -10.177 8.280 7.681 1.00100.19 N
ATOM 18 C4 U B2595 -9.837 8.262 9.024 1.00 99.56 C
ATOM 19 O4 U B2595 -9.387 9.273 9.554 1.00 99.33 O
ATOM 20 C5 U B2595 -10.067 7.018 9.683 1.00 99.24 C
ATOM 21 C6 U B2595 -10.571 5.990 8.984 1.00 99.56 C
ATOM 22 P C B2596 -9.095 0.547 6.412 1.00 74.18 P
ATOM 23 OP1 C B2596 -8.963 -0.356 5.239 1.00 74.58 O
ATOM 24 OP2 C B2596 -9.603 -0.020 7.701 1.00 73.78 O
ATOM 25 O5' C B2596 -7.706 1.327 6.668 1.00 73.74 O
TER
Atoms:
C2: (-6.424,5.617,9.656)
OP1: (-8.963,-0.356,5.239)
OP2: (-9.603,-0.020,7.701)
C4: (-7.938,4.783,11.148)
O5': (-7.706,1.327,6.668)
C3': (-4.819,2.480,7.035)
C1': (-5.901,4.527,7.553)
O4': (-6.651,3.856,6.576)
C5': (-6.799,1.642,5.604)
P: (-9.095,0.547,6.412)
O2: (-5.616,6.485,9.331)
C4': (-5.876,2.785,5.985)
C2': (-4.553,3.850,7.660)
O2': (-3.650,4.589,6.862)
N1: (-6.643,4.529,8.823)
N3: (-7.079,5.719,10.811)
N4: (-8.539,4.961,12.319)
C6: (-7.540,3.565,9.169)
C5: (-8.207,3.653,10.322)
O3': (-3.647,1.889,6.480)
OP1: (-8.963,-0.356,5.239)
OP2: (-9.603,-0.020,7.701)
C4: (-7.938,4.783,11.148)
O5': (-7.706,1.327,6.668)
C3': (-4.819,2.480,7.035)
C1': (-5.901,4.527,7.553)
O4': (-6.651,3.856,6.576)
C5': (-6.799,1.642,5.604)
P: (-9.095,0.547,6.412)
O2: (-5.616,6.485,9.331)
C4': (-5.876,2.785,5.985)
C2': (-4.553,3.850,7.660)
O2': (-3.650,4.589,6.862)
N1: (-6.643,4.529,8.823)
N3: (-7.079,5.719,10.811)
N4: (-8.539,4.961,12.319)
C6: (-7.540,3.565,9.169)
C5: (-8.207,3.653,10.322)
O3': (-3.647,1.889,6.480)
C4: (-9.837,8.262,9.024)
N3: (-10.177,8.280,7.681)
OP1: (-12.631,0.724,11.495)
OP2: (-10.881,2.564,11.785)
C2: (-10.696,7.243,6.935)
C1': (-11.452,4.925,6.906)
C3': (-10.375,2.791,6.857)
O5': (-12.446,2.586,9.796)
O4': (-12.094,4.057,7.810)
C5': (-11.843,1.863,8.736)
P: (-12.227,2.142,11.315)
C4': (-11.751,2.697,7.496)
C2': (-10.393,4.133,6.136)
O2': (-10.832,3.972,4.800)
N1: (-10.882,6.068,7.646)
O4: (-9.387,9.273,9.554)
O2: (-10.964,7.355,5.745)
C6: (-10.571,5.990,8.984)
C5: (-10.067,7.018,9.683)
O3': (-10.112,1.715,5.985)
N3: (-10.177,8.280,7.681)
OP1: (-12.631,0.724,11.495)
OP2: (-10.881,2.564,11.785)
C2: (-10.696,7.243,6.935)
C1': (-11.452,4.925,6.906)
C3': (-10.375,2.791,6.857)
O5': (-12.446,2.586,9.796)
O4': (-12.094,4.057,7.810)
C5': (-11.843,1.863,8.736)
P: (-12.227,2.142,11.315)
C4': (-11.751,2.697,7.496)
C2': (-10.393,4.133,6.136)
O2': (-10.832,3.972,4.800)
N1: (-10.882,6.068,7.646)
O4: (-9.387,9.273,9.554)
O2: (-10.964,7.355,5.745)
C6: (-10.571,5.990,8.984)
C5: (-10.067,7.018,9.683)
O3': (-10.112,1.715,5.985)
Image (generated by PyMOL):