Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12677:12676
Extra
PDB:
ATOM 1 O3' U A2676 10.837 14.234 50.789 1.00 57.85 O
ATOM 2 P C A2677 9.549 14.883 50.067 1.00 58.08 P
ATOM 3 OP1 C A2677 10.019 15.454 48.778 1.00 58.24 O
ATOM 4 OP2 C A2677 8.878 15.821 51.066 1.00 58.24 O
ATOM 5 O5' C A2677 8.627 13.603 49.792 1.00 58.08 O
ATOM 6 C5' C A2677 9.114 12.483 49.080 1.00 57.92 C
ATOM 7 C4' C A2677 8.258 11.273 49.325 1.00 57.88 C
ATOM 8 O4' C A2677 8.285 10.928 50.738 1.00 57.66 O
ATOM 9 C3' C A2677 6.781 11.428 49.017 1.00 58.20 C
ATOM 10 O3' C A2677 6.481 11.274 47.662 1.00 58.41 O
ATOM 11 C2' C A2677 6.141 10.365 49.880 1.00 58.07 C
ATOM 12 O2' C A2677 6.292 9.088 49.276 1.00 57.96 O
ATOM 13 C1' C A2677 7.015 10.431 51.131 1.00 57.78 C
ATOM 14 N1 C A2677 6.452 11.342 52.170 1.00 57.89 N
ATOM 15 C2 C A2677 5.447 10.913 53.032 1.00 57.93 C
ATOM 16 O2 C A2677 5.003 9.794 52.877 1.00 57.88 O
ATOM 17 N3 C A2677 4.958 11.692 54.013 1.00 58.03 N
ATOM 18 C4 C A2677 5.460 12.911 54.135 1.00 58.10 C
ATOM 19 N4 C A2677 4.974 13.678 55.097 1.00 58.22 N
ATOM 20 C5 C A2677 6.506 13.413 53.291 1.00 58.06 C
ATOM 21 C6 C A2677 6.972 12.597 52.338 1.00 57.95 C
ATOM 22 P A A2678 5.349 12.206 47.007 1.00 52.55 P
ATOM 23 OP1 A A2678 5.116 11.706 45.608 1.00 52.73 O
ATOM 24 OP2 A A2678 5.792 13.623 47.183 1.00 52.65 O
ATOM 25 O5' A A2678 4.063 11.919 47.932 1.00 52.64 O
TER
ATOM 1 O3' U B2675 9.099 15.663 56.714 1.00 56.06 O
ATOM 2 P U B2676 8.689 16.023 55.208 1.00 58.07 P
ATOM 3 OP1 U B2676 9.158 17.378 54.929 1.00 58.24 O
ATOM 4 OP2 U B2676 7.247 15.724 55.090 1.00 58.28 O
ATOM 5 O5' U B2676 9.527 14.988 54.340 1.00 57.84 O
ATOM 6 C5' U B2676 10.796 15.335 53.809 1.00 57.73 C
ATOM 7 C4' U B2676 11.457 14.160 53.149 1.00 57.50 C
ATOM 8 O4' U B2676 11.611 13.073 54.101 1.00 57.23 O
ATOM 9 C3' U B2676 10.701 13.524 51.997 1.00 57.64 C
ATOM 10 O3' U B2676 10.837 14.234 50.789 1.00 57.85 O
ATOM 11 C2' U B2676 11.318 12.143 51.934 1.00 57.35 C
ATOM 12 O2' U B2676 12.571 12.189 51.282 1.00 57.22 O
ATOM 13 C1' U B2676 11.543 11.835 53.416 1.00 57.13 C
ATOM 14 N1 U B2676 10.412 11.038 53.945 1.00 57.15 N
ATOM 15 C2 U B2676 10.446 9.714 53.562 1.00 57.02 C
ATOM 16 O2 U B2676 11.339 9.245 52.922 1.00 56.88 O
ATOM 17 N3 U B2676 9.423 8.924 53.943 1.00 57.05 N
ATOM 18 C4 U B2676 8.348 9.340 54.665 1.00 57.22 C
ATOM 19 O4 U B2676 7.521 8.488 54.924 1.00 57.24 O
ATOM 20 C5 U B2676 8.344 10.726 55.036 1.00 57.36 C
ATOM 21 C6 U B2676 9.343 11.534 54.661 1.00 57.33 C
ATOM 22 P C B2677 9.549 14.883 50.067 1.00 58.08 P
ATOM 23 OP1 C B2677 10.019 15.454 48.778 1.00 58.24 O
ATOM 24 OP2 C B2677 8.878 15.821 51.066 1.00 58.24 O
ATOM 25 O5' C B2677 8.627 13.603 49.792 1.00 58.08 O
TER
ATOM 2 P C A2677 9.549 14.883 50.067 1.00 58.08 P
ATOM 3 OP1 C A2677 10.019 15.454 48.778 1.00 58.24 O
ATOM 4 OP2 C A2677 8.878 15.821 51.066 1.00 58.24 O
ATOM 5 O5' C A2677 8.627 13.603 49.792 1.00 58.08 O
ATOM 6 C5' C A2677 9.114 12.483 49.080 1.00 57.92 C
ATOM 7 C4' C A2677 8.258 11.273 49.325 1.00 57.88 C
ATOM 8 O4' C A2677 8.285 10.928 50.738 1.00 57.66 O
ATOM 9 C3' C A2677 6.781 11.428 49.017 1.00 58.20 C
ATOM 10 O3' C A2677 6.481 11.274 47.662 1.00 58.41 O
ATOM 11 C2' C A2677 6.141 10.365 49.880 1.00 58.07 C
ATOM 12 O2' C A2677 6.292 9.088 49.276 1.00 57.96 O
ATOM 13 C1' C A2677 7.015 10.431 51.131 1.00 57.78 C
ATOM 14 N1 C A2677 6.452 11.342 52.170 1.00 57.89 N
ATOM 15 C2 C A2677 5.447 10.913 53.032 1.00 57.93 C
ATOM 16 O2 C A2677 5.003 9.794 52.877 1.00 57.88 O
ATOM 17 N3 C A2677 4.958 11.692 54.013 1.00 58.03 N
ATOM 18 C4 C A2677 5.460 12.911 54.135 1.00 58.10 C
ATOM 19 N4 C A2677 4.974 13.678 55.097 1.00 58.22 N
ATOM 20 C5 C A2677 6.506 13.413 53.291 1.00 58.06 C
ATOM 21 C6 C A2677 6.972 12.597 52.338 1.00 57.95 C
ATOM 22 P A A2678 5.349 12.206 47.007 1.00 52.55 P
ATOM 23 OP1 A A2678 5.116 11.706 45.608 1.00 52.73 O
ATOM 24 OP2 A A2678 5.792 13.623 47.183 1.00 52.65 O
ATOM 25 O5' A A2678 4.063 11.919 47.932 1.00 52.64 O
TER
ATOM 1 O3' U B2675 9.099 15.663 56.714 1.00 56.06 O
ATOM 2 P U B2676 8.689 16.023 55.208 1.00 58.07 P
ATOM 3 OP1 U B2676 9.158 17.378 54.929 1.00 58.24 O
ATOM 4 OP2 U B2676 7.247 15.724 55.090 1.00 58.28 O
ATOM 5 O5' U B2676 9.527 14.988 54.340 1.00 57.84 O
ATOM 6 C5' U B2676 10.796 15.335 53.809 1.00 57.73 C
ATOM 7 C4' U B2676 11.457 14.160 53.149 1.00 57.50 C
ATOM 8 O4' U B2676 11.611 13.073 54.101 1.00 57.23 O
ATOM 9 C3' U B2676 10.701 13.524 51.997 1.00 57.64 C
ATOM 10 O3' U B2676 10.837 14.234 50.789 1.00 57.85 O
ATOM 11 C2' U B2676 11.318 12.143 51.934 1.00 57.35 C
ATOM 12 O2' U B2676 12.571 12.189 51.282 1.00 57.22 O
ATOM 13 C1' U B2676 11.543 11.835 53.416 1.00 57.13 C
ATOM 14 N1 U B2676 10.412 11.038 53.945 1.00 57.15 N
ATOM 15 C2 U B2676 10.446 9.714 53.562 1.00 57.02 C
ATOM 16 O2 U B2676 11.339 9.245 52.922 1.00 56.88 O
ATOM 17 N3 U B2676 9.423 8.924 53.943 1.00 57.05 N
ATOM 18 C4 U B2676 8.348 9.340 54.665 1.00 57.22 C
ATOM 19 O4 U B2676 7.521 8.488 54.924 1.00 57.24 O
ATOM 20 C5 U B2676 8.344 10.726 55.036 1.00 57.36 C
ATOM 21 C6 U B2676 9.343 11.534 54.661 1.00 57.33 C
ATOM 22 P C B2677 9.549 14.883 50.067 1.00 58.08 P
ATOM 23 OP1 C B2677 10.019 15.454 48.778 1.00 58.24 O
ATOM 24 OP2 C B2677 8.878 15.821 51.066 1.00 58.24 O
ATOM 25 O5' C B2677 8.627 13.603 49.792 1.00 58.08 O
TER
Atoms:
C2: (5.447,10.913,53.032)
OP1: (10.019,15.454,48.778)
OP2: (8.878,15.821,51.066)
C4: (5.460,12.911,54.135)
O5': (8.627,13.603,49.792)
C3': (6.781,11.428,49.017)
C1': (7.015,10.431,51.131)
O4': (8.285,10.928,50.738)
C5': (9.114,12.483,49.080)
P: (9.549,14.883,50.067)
O2: (5.003,9.794,52.877)
C4': (8.258,11.273,49.325)
C2': (6.141,10.365,49.880)
O2': (6.292,9.088,49.276)
N1: (6.452,11.342,52.170)
N3: (4.958,11.692,54.013)
N4: (4.974,13.678,55.097)
C6: (6.972,12.597,52.338)
C5: (6.506,13.413,53.291)
O3': (6.481,11.274,47.662)
OP1: (10.019,15.454,48.778)
OP2: (8.878,15.821,51.066)
C4: (5.460,12.911,54.135)
O5': (8.627,13.603,49.792)
C3': (6.781,11.428,49.017)
C1': (7.015,10.431,51.131)
O4': (8.285,10.928,50.738)
C5': (9.114,12.483,49.080)
P: (9.549,14.883,50.067)
O2: (5.003,9.794,52.877)
C4': (8.258,11.273,49.325)
C2': (6.141,10.365,49.880)
O2': (6.292,9.088,49.276)
N1: (6.452,11.342,52.170)
N3: (4.958,11.692,54.013)
N4: (4.974,13.678,55.097)
C6: (6.972,12.597,52.338)
C5: (6.506,13.413,53.291)
O3': (6.481,11.274,47.662)
C4: (8.348,9.340,54.665)
N3: (9.423,8.924,53.943)
OP1: (9.158,17.378,54.929)
OP2: (7.247,15.724,55.090)
C2: (10.446,9.714,53.562)
C1': (11.543,11.835,53.416)
C3': (10.701,13.524,51.997)
O5': (9.527,14.988,54.340)
O4': (11.611,13.073,54.101)
C5': (10.796,15.335,53.809)
P: (8.689,16.023,55.208)
C4': (11.457,14.160,53.149)
C2': (11.318,12.143,51.934)
O2': (12.571,12.189,51.282)
N1: (10.412,11.038,53.945)
O4: (7.521,8.488,54.924)
O2: (11.339,9.245,52.922)
C6: (9.343,11.534,54.661)
C5: (8.344,10.726,55.036)
O3': (10.837,14.234,50.789)
N3: (9.423,8.924,53.943)
OP1: (9.158,17.378,54.929)
OP2: (7.247,15.724,55.090)
C2: (10.446,9.714,53.562)
C1': (11.543,11.835,53.416)
C3': (10.701,13.524,51.997)
O5': (9.527,14.988,54.340)
O4': (11.611,13.073,54.101)
C5': (10.796,15.335,53.809)
P: (8.689,16.023,55.208)
C4': (11.457,14.160,53.149)
C2': (11.318,12.143,51.934)
O2': (12.571,12.189,51.282)
N1: (10.412,11.038,53.945)
O4: (7.521,8.488,54.924)
O2: (11.339,9.245,52.922)
C6: (9.343,11.534,54.661)
C5: (8.344,10.726,55.036)
O3': (10.837,14.234,50.789)
Image (generated by PyMOL):