Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01063:01064
Extra
PDB:
ATOM 1 O3' C A1062 17.675 115.197 122.148 1.00 38.10 O
ATOM 2 P C A1063 17.636 114.927 120.568 1.00 38.86 P
ATOM 3 OP1 C A1063 16.573 115.793 120.001 1.00 40.65 O
ATOM 4 OP2 C A1063 17.592 113.464 120.334 1.00 39.59 O
ATOM 5 O5' C A1063 19.041 115.470 120.067 1.00 39.12 O
ATOM 6 C5' C A1063 19.378 116.849 120.241 1.00 38.38 C
ATOM 7 C4' C A1063 20.798 117.100 119.815 1.00 39.11 C
ATOM 8 O4' C A1063 21.724 116.435 120.713 1.00 39.26 O
ATOM 9 C3' C A1063 21.215 116.567 118.458 1.00 38.93 C
ATOM 10 O3' C A1063 20.729 117.372 117.397 1.00 39.98 O
ATOM 11 C2' C A1063 22.730 116.629 118.575 1.00 37.86 C
ATOM 12 O2' C A1063 23.200 117.961 118.467 1.00 38.59 O
ATOM 13 C1' C A1063 22.929 116.153 120.015 1.00 37.26 C
ATOM 14 N1 C A1063 23.209 114.709 120.103 1.00 37.06 N
ATOM 15 C2 C A1063 24.531 114.274 119.962 1.00 36.41 C
ATOM 16 O2 C A1063 25.427 115.116 119.784 1.00 36.72 O
ATOM 17 N3 C A1063 24.801 112.954 120.026 1.00 34.76 N
ATOM 18 C4 C A1063 23.813 112.081 120.222 1.00 35.66 C
ATOM 19 N4 C A1063 24.126 110.787 120.274 1.00 36.41 N
ATOM 20 C5 C A1063 22.459 112.495 120.372 1.00 34.64 C
ATOM 21 C6 C A1063 22.204 113.804 120.310 1.00 36.25 C
ATOM 22 P C A1064 20.472 116.711 115.959 1.00 41.43 P
ATOM 23 OP1 C A1064 21.789 116.319 115.393 1.00 43.03 O
ATOM 24 OP2 C A1064 19.586 117.638 115.210 1.00 42.40 O
ATOM 25 O5' C A1064 19.663 115.376 116.265 1.00 38.86 O
TER
ATOM 1 O3' C B1063 20.729 117.372 117.397 1.00 39.98 O
ATOM 2 P C B1064 20.472 116.711 115.959 1.00 41.43 P
ATOM 3 OP1 C B1064 21.789 116.319 115.393 1.00 43.03 O
ATOM 4 OP2 C B1064 19.586 117.638 115.210 1.00 42.40 O
ATOM 5 O5' C B1064 19.663 115.376 116.265 1.00 38.86 O
ATOM 6 C5' C B1064 18.866 114.756 115.248 1.00 38.84 C
ATOM 7 C4' C B1064 18.493 113.352 115.657 1.00 41.26 C
ATOM 8 O4' C B1064 19.620 112.454 115.466 1.00 40.35 O
ATOM 9 C3' C B1064 18.051 113.191 117.108 1.00 42.69 C
ATOM 10 O3' C B1064 17.067 112.174 117.171 1.00 42.08 O
ATOM 11 C2' C B1064 19.335 112.724 117.791 1.00 42.61 C
ATOM 12 O2' C B1064 19.109 111.970 118.967 1.00 40.39 O
ATOM 13 C1' C B1064 19.967 111.856 116.698 1.00 40.41 C
ATOM 14 N1 C B1064 21.437 111.806 116.770 1.00 40.52 N
ATOM 15 C2 C B1064 22.073 110.565 116.944 1.00 40.94 C
ATOM 16 O2 C B1064 21.387 109.534 117.018 1.00 41.84 O
ATOM 17 N3 C B1064 23.420 110.523 117.017 1.00 39.63 N
ATOM 18 C4 C B1064 24.131 111.647 116.914 1.00 39.98 C
ATOM 19 N4 C B1064 25.457 111.553 116.982 1.00 41.97 N
ATOM 20 C5 C B1064 23.513 112.918 116.734 1.00 40.35 C
ATOM 21 C6 C B1064 22.179 112.952 116.669 1.00 40.35 C
ATOM 22 P A B1065 15.542 112.522 116.828 1.00 40.51 P
ATOM 23 OP1 A B1065 15.525 113.616 115.833 1.00 39.36 O
ATOM 24 OP2 A B1065 14.811 112.685 118.109 1.00 41.48 O
ATOM 25 O5' A B1065 15.057 111.181 116.128 1.00 39.47 O
TER
ATOM 2 P C A1063 17.636 114.927 120.568 1.00 38.86 P
ATOM 3 OP1 C A1063 16.573 115.793 120.001 1.00 40.65 O
ATOM 4 OP2 C A1063 17.592 113.464 120.334 1.00 39.59 O
ATOM 5 O5' C A1063 19.041 115.470 120.067 1.00 39.12 O
ATOM 6 C5' C A1063 19.378 116.849 120.241 1.00 38.38 C
ATOM 7 C4' C A1063 20.798 117.100 119.815 1.00 39.11 C
ATOM 8 O4' C A1063 21.724 116.435 120.713 1.00 39.26 O
ATOM 9 C3' C A1063 21.215 116.567 118.458 1.00 38.93 C
ATOM 10 O3' C A1063 20.729 117.372 117.397 1.00 39.98 O
ATOM 11 C2' C A1063 22.730 116.629 118.575 1.00 37.86 C
ATOM 12 O2' C A1063 23.200 117.961 118.467 1.00 38.59 O
ATOM 13 C1' C A1063 22.929 116.153 120.015 1.00 37.26 C
ATOM 14 N1 C A1063 23.209 114.709 120.103 1.00 37.06 N
ATOM 15 C2 C A1063 24.531 114.274 119.962 1.00 36.41 C
ATOM 16 O2 C A1063 25.427 115.116 119.784 1.00 36.72 O
ATOM 17 N3 C A1063 24.801 112.954 120.026 1.00 34.76 N
ATOM 18 C4 C A1063 23.813 112.081 120.222 1.00 35.66 C
ATOM 19 N4 C A1063 24.126 110.787 120.274 1.00 36.41 N
ATOM 20 C5 C A1063 22.459 112.495 120.372 1.00 34.64 C
ATOM 21 C6 C A1063 22.204 113.804 120.310 1.00 36.25 C
ATOM 22 P C A1064 20.472 116.711 115.959 1.00 41.43 P
ATOM 23 OP1 C A1064 21.789 116.319 115.393 1.00 43.03 O
ATOM 24 OP2 C A1064 19.586 117.638 115.210 1.00 42.40 O
ATOM 25 O5' C A1064 19.663 115.376 116.265 1.00 38.86 O
TER
ATOM 1 O3' C B1063 20.729 117.372 117.397 1.00 39.98 O
ATOM 2 P C B1064 20.472 116.711 115.959 1.00 41.43 P
ATOM 3 OP1 C B1064 21.789 116.319 115.393 1.00 43.03 O
ATOM 4 OP2 C B1064 19.586 117.638 115.210 1.00 42.40 O
ATOM 5 O5' C B1064 19.663 115.376 116.265 1.00 38.86 O
ATOM 6 C5' C B1064 18.866 114.756 115.248 1.00 38.84 C
ATOM 7 C4' C B1064 18.493 113.352 115.657 1.00 41.26 C
ATOM 8 O4' C B1064 19.620 112.454 115.466 1.00 40.35 O
ATOM 9 C3' C B1064 18.051 113.191 117.108 1.00 42.69 C
ATOM 10 O3' C B1064 17.067 112.174 117.171 1.00 42.08 O
ATOM 11 C2' C B1064 19.335 112.724 117.791 1.00 42.61 C
ATOM 12 O2' C B1064 19.109 111.970 118.967 1.00 40.39 O
ATOM 13 C1' C B1064 19.967 111.856 116.698 1.00 40.41 C
ATOM 14 N1 C B1064 21.437 111.806 116.770 1.00 40.52 N
ATOM 15 C2 C B1064 22.073 110.565 116.944 1.00 40.94 C
ATOM 16 O2 C B1064 21.387 109.534 117.018 1.00 41.84 O
ATOM 17 N3 C B1064 23.420 110.523 117.017 1.00 39.63 N
ATOM 18 C4 C B1064 24.131 111.647 116.914 1.00 39.98 C
ATOM 19 N4 C B1064 25.457 111.553 116.982 1.00 41.97 N
ATOM 20 C5 C B1064 23.513 112.918 116.734 1.00 40.35 C
ATOM 21 C6 C B1064 22.179 112.952 116.669 1.00 40.35 C
ATOM 22 P A B1065 15.542 112.522 116.828 1.00 40.51 P
ATOM 23 OP1 A B1065 15.525 113.616 115.833 1.00 39.36 O
ATOM 24 OP2 A B1065 14.811 112.685 118.109 1.00 41.48 O
ATOM 25 O5' A B1065 15.057 111.181 116.128 1.00 39.47 O
TER
Atoms:
C2: (24.531,114.274,119.962)
OP1: (16.573,115.793,120.001)
OP2: (17.592,113.464,120.334)
C4: (23.813,112.081,120.222)
O5': (19.041,115.470,120.067)
C3': (21.215,116.567,118.458)
C1': (22.929,116.153,120.015)
O4': (21.724,116.435,120.713)
C5': (19.378,116.849,120.241)
P: (17.636,114.927,120.568)
O2: (25.427,115.116,119.784)
C4': (20.798,117.100,119.815)
C2': (22.730,116.629,118.575)
O2': (23.200,117.961,118.467)
N1: (23.209,114.709,120.103)
N3: (24.801,112.954,120.026)
N4: (24.126,110.787,120.274)
C6: (22.204,113.804,120.310)
C5: (22.459,112.495,120.372)
O3': (20.729,117.372,117.397)
OP1: (16.573,115.793,120.001)
OP2: (17.592,113.464,120.334)
C4: (23.813,112.081,120.222)
O5': (19.041,115.470,120.067)
C3': (21.215,116.567,118.458)
C1': (22.929,116.153,120.015)
O4': (21.724,116.435,120.713)
C5': (19.378,116.849,120.241)
P: (17.636,114.927,120.568)
O2: (25.427,115.116,119.784)
C4': (20.798,117.100,119.815)
C2': (22.730,116.629,118.575)
O2': (23.200,117.961,118.467)
N1: (23.209,114.709,120.103)
N3: (24.801,112.954,120.026)
N4: (24.126,110.787,120.274)
C6: (22.204,113.804,120.310)
C5: (22.459,112.495,120.372)
O3': (20.729,117.372,117.397)
C2: (22.073,110.565,116.944)
OP1: (21.789,116.319,115.393)
OP2: (19.586,117.638,115.210)
C4: (24.131,111.647,116.914)
O5': (19.663,115.376,116.265)
C3': (18.051,113.191,117.108)
C1': (19.967,111.856,116.698)
O4': (19.620,112.454,115.466)
C5': (18.866,114.756,115.248)
P: (20.472,116.711,115.959)
O2: (21.387,109.534,117.018)
C4': (18.493,113.352,115.657)
C2': (19.335,112.724,117.791)
O2': (19.109,111.970,118.967)
N1: (21.437,111.806,116.770)
N3: (23.420,110.523,117.017)
N4: (25.457,111.553,116.982)
C6: (22.179,112.952,116.669)
C5: (23.513,112.918,116.734)
O3': (17.067,112.174,117.171)
OP1: (21.789,116.319,115.393)
OP2: (19.586,117.638,115.210)
C4: (24.131,111.647,116.914)
O5': (19.663,115.376,116.265)
C3': (18.051,113.191,117.108)
C1': (19.967,111.856,116.698)
O4': (19.620,112.454,115.466)
C5': (18.866,114.756,115.248)
P: (20.472,116.711,115.959)
O2: (21.387,109.534,117.018)
C4': (18.493,113.352,115.657)
C2': (19.335,112.724,117.791)
O2': (19.109,111.970,118.967)
N1: (21.437,111.806,116.770)
N3: (23.420,110.523,117.017)
N4: (25.457,111.553,116.982)
C6: (22.179,112.952,116.669)
C5: (23.513,112.918,116.734)
O3': (17.067,112.174,117.171)
Image (generated by PyMOL):